Wall clock time and date at job start Mon Mar 30 2020 07:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00548 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47278 * 90.00449 * 8 6 4 10 10 H 1.48502 * 109.46981 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00330 * 8 6 4 12 12 C 1.37899 * 110.99999 * 123.95437 * 2 1 3 13 13 C 1.40271 * 121.11899 * 296.04641 * 12 2 1 14 14 C 1.43201 * 120.35575 * 359.95472 * 13 12 2 15 15 N 3.56668 * 72.01534 * 57.63759 * 2 1 3 16 16 C 1.40377 * 119.29555 * 179.97438 * 13 12 2 17 17 N 1.30889 * 121.63797 * 0.02562 * 16 13 12 18 18 C 1.34008 * 121.99386 * 0.02562 * 17 16 13 19 19 C 1.40460 * 120.74461 * 179.97438 * 18 17 16 20 20 C 1.36212 * 119.81137 * 180.02562 * 19 18 17 21 21 C 1.39212 * 121.03805 * 0.02562 * 20 19 18 22 22 C 1.36300 * 120.76792 * 359.97438 * 21 20 19 23 23 C 1.40198 * 119.64347 * 359.74564 * 22 21 20 24 24 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 25 25 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 27 27 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 28 28 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 29 29 H 0.96999 * 120.00406 * 179.97438 * 7 6 4 30 30 H 1.07997 * 119.18828 * 180.02562 * 16 13 12 31 31 H 1.08000 * 120.08906 * 0.03963 * 19 18 17 32 32 H 1.08003 * 119.47960 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.61406 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.17663 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 1.7141 3.9391 -2.6618 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0626 -0.4556 10 1 2.6931 5.7258 -0.3237 11 1 2.6292 3.7760 1.1168 12 6 1.9632 -0.7191 1.0679 13 6 1.7307 -0.3077 2.3886 14 6 0.9707 0.8765 2.6546 15 7 0.3678 1.8159 2.8655 16 6 2.2514 -1.0689 3.4469 17 7 2.9501 -2.1548 3.2327 18 6 3.2083 -2.6005 1.9956 19 6 3.9617 -3.7691 1.7960 20 6 4.2132 -4.2047 0.5302 21 6 3.7350 -3.5089 -0.5767 22 6 3.0006 -2.3712 -0.4212 23 6 2.7187 -1.8987 0.8683 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.5610 1.9274 0.8308 28 1 3.0796 1.3445 0.1082 29 1 1.9886 4.8552 -2.8238 30 1 2.0710 -0.7509 4.4631 31 1 4.3402 -4.3207 2.6439 32 1 4.7934 -5.1037 0.3829 33 1 3.9484 -3.8748 -1.5702 34 1 2.6340 -1.8392 -1.2865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037413159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:11 Heat of formation + Delta-G solvation = 106.292357 kcal Electronic energy + Delta-G solvation = -19522.555023 eV Core-core repulsion = 16614.229103 eV Total energy + Delta-G solvation = -2908.325921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07997 -38.29489 -36.75459 -35.89566 -32.99811 -31.90419 -30.82199 -29.80191 -28.15761 -25.94542 -24.24804 -23.77222 -22.02155 -20.51394 -19.57495 -17.90750 -17.28247 -16.79248 -15.75483 -15.10684 -14.79589 -14.71676 -14.31351 -13.92167 -13.84739 -13.68102 -13.38488 -13.20287 -12.82083 -12.47399 -12.38338 -11.79020 -11.65627 -11.61513 -11.41733 -11.33828 -10.91612 -10.68716 -10.15403 -9.94740 -9.65432 -9.52600 -8.80520 -8.71049 -8.11322 -8.00701 -6.19729 -4.19445 0.22083 0.64183 1.87778 2.64273 2.84716 3.20372 3.28304 3.32502 3.48973 3.91211 4.04281 4.13552 4.27634 4.30618 4.67853 4.84004 4.99900 5.02843 5.12345 5.24129 5.43421 5.48869 5.72652 5.75988 5.92399 5.96101 6.05290 6.30021 6.34263 6.49744 6.49898 6.58144 6.64474 6.82707 7.29840 7.36275 7.63990 7.72684 7.86025 8.41712 8.85202 9.39982 10.92405 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.006902 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.393765 B = 4055.817539 C = 4710.340165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.507 5.507 3 C 0.161 3.839 4 C -0.515 4.515 5 H 0.086 0.914 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.865 3.135 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.248 3.752 13 C -0.147 4.147 14 C 0.259 3.741 15 N -0.405 5.405 16 C 0.188 3.812 17 N -0.488 5.488 18 C 0.151 3.849 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.048 4.048 23 C -0.101 4.101 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.026 0.974 27 H 0.008 0.992 28 H 0.028 0.972 29 H 0.266 0.734 30 H 0.164 0.836 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -15.832 7.831 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.227 5.227 3 C 0.037 3.963 4 C -0.553 4.553 5 H 0.104 0.896 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.692 3.308 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.140 3.860 13 C -0.156 4.156 14 C -0.057 4.057 15 N -0.080 5.080 16 C 0.012 3.988 17 N -0.195 5.195 18 C 0.030 3.970 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.157 4.157 22 C -0.067 4.067 23 C -0.104 4.104 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.111 -14.957 8.238 17.356 hybrid contribution 0.248 1.281 0.522 1.405 sum 3.358 -13.676 8.760 16.584 Atomic orbital electron populations 1.22423 0.84637 1.00889 1.02950 1.59256 1.09044 1.17871 1.36562 1.20498 0.95263 0.81448 0.99110 1.20827 1.36697 0.97432 1.00359 0.89607 1.24793 0.95473 0.97148 0.95162 1.69856 1.46097 1.13405 1.23595 0.86997 0.81021 0.79896 0.82883 1.19837 1.20728 1.19163 1.19667 0.87841 0.90366 0.88078 1.17928 1.06425 0.94992 0.96256 1.25061 0.93731 0.92774 0.94094 1.81261 1.09571 1.09704 1.07486 1.22741 0.89498 0.88414 0.98124 1.68018 1.15079 1.13810 1.22630 1.18933 0.95541 0.94862 0.87636 1.20694 0.99460 0.95237 0.97811 1.20980 0.97779 0.99265 0.92247 1.20989 0.99418 0.96061 0.99206 1.21240 0.94357 0.94547 0.96580 1.18722 1.00883 0.95443 0.95360 0.88536 0.92336 0.95515 0.97474 0.95373 0.92354 0.81932 0.84722 0.85395 0.85324 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.00 60.07 0.54 1.21 16 2 N -0.51 -9.93 3.89 -179.61 -0.70 -10.63 16 3 C 0.16 3.77 3.25 -4.97 -0.02 3.76 16 4 C -0.52 -14.05 9.07 -34.44 -0.31 -14.36 16 5 H 0.09 2.49 7.35 -52.48 -0.39 2.10 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.67 6.54 56.52 0.37 -6.31 16 12 C 0.25 4.27 4.67 -83.13 -0.39 3.88 16 13 C -0.15 -2.39 5.54 -106.40 -0.59 -2.98 16 14 C 0.26 4.71 10.29 -22.47 -0.23 4.48 16 15 N -0.40 -8.16 17.86 41.84 0.75 -7.42 16 16 C 0.19 2.55 10.87 -17.15 -0.19 2.36 16 17 N -0.49 -6.88 10.30 -10.75 -0.11 -6.99 16 18 C 0.15 2.13 6.60 -84.83 -0.56 1.57 16 19 C -0.11 -1.28 9.97 -39.47 -0.39 -1.68 16 20 C -0.08 -0.81 9.94 -39.95 -0.40 -1.20 16 21 C -0.14 -1.51 9.96 -39.92 -0.40 -1.90 16 22 C -0.05 -0.67 9.56 -39.54 -0.38 -1.05 16 23 C -0.10 -1.55 5.75 -106.67 -0.61 -2.16 16 24 H 0.10 1.90 6.86 -51.93 -0.36 1.54 16 25 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 26 H 0.03 0.50 5.57 -51.93 -0.29 0.21 16 27 H 0.01 0.19 4.34 -51.93 -0.23 -0.04 16 28 H 0.03 0.68 7.48 -51.93 -0.39 0.29 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.15 2.18 7.59 -52.49 -0.40 1.78 16 LS Contribution 292.03 15.07 4.40 4.40 Total: -1.00 -31.05 292.03 -6.90 -37.95 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.32 Total: -2.42 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -4.02 Total: -5.96 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.71 Total: -50.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.05 -6.90 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037413159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.246 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds