Wall clock time and date at job start Mon Mar 30 2020 07:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00548 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47278 * 90.00449 * 8 6 4 10 10 H 1.48502 * 109.46981 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00330 * 8 6 4 12 12 C 1.37899 * 110.99999 * 123.95437 * 2 1 3 13 13 C 1.40271 * 121.11899 * 296.04641 * 12 2 1 14 14 C 1.43201 * 120.35575 * 359.95472 * 13 12 2 15 15 N 3.56668 * 72.01534 * 57.63759 * 2 1 3 16 16 C 1.40377 * 119.29555 * 179.97438 * 13 12 2 17 17 N 1.30889 * 121.63797 * 0.02562 * 16 13 12 18 18 C 1.34008 * 121.99386 * 0.02562 * 17 16 13 19 19 C 1.40460 * 120.74461 * 179.97438 * 18 17 16 20 20 C 1.36212 * 119.81137 * 180.02562 * 19 18 17 21 21 C 1.39212 * 121.03805 * 0.02562 * 20 19 18 22 22 C 1.36300 * 120.76792 * 359.97438 * 21 20 19 23 23 C 1.40198 * 119.64347 * 359.74564 * 22 21 20 24 24 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 25 25 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 27 27 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 28 28 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 29 29 H 0.96999 * 120.00406 * 179.97438 * 7 6 4 30 30 H 1.07997 * 119.18828 * 180.02562 * 16 13 12 31 31 H 1.08000 * 120.08906 * 0.03963 * 19 18 17 32 32 H 1.08003 * 119.47960 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.61406 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.17663 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 1.7141 3.9391 -2.6618 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0626 -0.4556 10 1 2.6931 5.7258 -0.3237 11 1 2.6292 3.7760 1.1168 12 6 1.9632 -0.7191 1.0679 13 6 1.7307 -0.3077 2.3886 14 6 0.9707 0.8765 2.6546 15 7 0.3678 1.8159 2.8655 16 6 2.2514 -1.0689 3.4469 17 7 2.9501 -2.1548 3.2327 18 6 3.2083 -2.6005 1.9956 19 6 3.9617 -3.7691 1.7960 20 6 4.2132 -4.2047 0.5302 21 6 3.7350 -3.5089 -0.5767 22 6 3.0006 -2.3712 -0.4212 23 6 2.7187 -1.8987 0.8683 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.5610 1.9274 0.8308 28 1 3.0796 1.3445 0.1082 29 1 1.9886 4.8552 -2.8238 30 1 2.0710 -0.7509 4.4631 31 1 4.3402 -4.3207 2.6439 32 1 4.7934 -5.1037 0.3829 33 1 3.9484 -3.8748 -1.5702 34 1 2.6340 -1.8392 -1.2865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037413159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:10 Heat of formation + Delta-G solvation = 86.492292 kcal Electronic energy + Delta-G solvation = -19523.413619 eV Core-core repulsion = 16614.229103 eV Total energy + Delta-G solvation = -2909.184516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23728 -39.58356 -37.91904 -37.30505 -34.96884 -33.28366 -31.88193 -30.93528 -30.00045 -27.40964 -25.51969 -24.90143 -23.58610 -21.84479 -20.73450 -19.41950 -18.57504 -18.38225 -16.95118 -16.81154 -16.11750 -15.97492 -15.67207 -15.49128 -14.95959 -14.88593 -14.73070 -14.62031 -14.37408 -14.07895 -13.90922 -13.43483 -13.16313 -12.75682 -12.66939 -12.57733 -12.51526 -12.35278 -12.09408 -11.65592 -11.18113 -10.90251 -10.77721 -9.82587 -9.59517 -9.14804 -8.40098 -6.43025 -0.94267 -0.38387 0.82697 1.20842 1.24667 1.32020 1.43221 1.54536 2.20861 2.24971 2.61397 2.63306 2.93260 3.07969 3.29301 3.55894 3.77484 3.92370 4.03412 4.28267 4.30242 4.39547 4.45461 4.54586 4.58948 4.67495 4.83049 4.93698 5.04359 5.14117 5.31231 5.37246 5.48716 5.59155 5.62464 5.92432 6.02054 6.25335 6.41008 6.62124 6.76280 7.19376 8.75468 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.006902 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.393765 B = 4055.817539 C = 4710.340165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.508 5.508 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.025 3.975 7 N -0.934 5.934 8 Si 0.924 3.076 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.268 1.268 12 C 0.223 3.777 13 C -0.155 4.155 14 C 0.275 3.725 15 N -0.448 5.448 16 C 0.193 3.807 17 N -0.484 5.484 18 C 0.138 3.862 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.119 4.119 22 C -0.079 4.079 23 C -0.111 4.111 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.019 0.981 27 H 0.000 1.000 28 H 0.025 0.975 29 H 0.269 0.731 30 H 0.195 0.805 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -18.621 9.331 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.228 5.228 3 C 0.049 3.951 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.748 3.252 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.193 1.193 12 C 0.116 3.884 13 C -0.164 4.164 14 C -0.039 4.039 15 N -0.124 5.124 16 C 0.017 3.983 17 N -0.191 5.191 18 C 0.017 3.983 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.137 4.137 22 C -0.098 4.098 23 C -0.114 4.114 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.017 0.983 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.212 0.788 31 H 0.176 0.824 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.167 -17.774 9.746 20.919 hybrid contribution -0.355 1.901 -0.021 1.934 sum 4.812 -15.873 9.725 19.227 Atomic orbital electron populations 1.22364 0.84316 1.02357 1.01328 1.59031 1.09471 1.15713 1.38603 1.20144 0.94930 0.83574 0.96490 1.21043 1.35486 0.97486 1.01185 0.92649 1.25547 0.96691 0.98205 0.97001 1.69976 1.47887 1.13988 1.25551 0.86062 0.80377 0.78617 0.80128 1.18188 1.20286 1.19316 1.19723 0.89554 0.91489 0.87601 1.18034 1.06916 0.94713 0.96696 1.25409 0.92949 0.92656 0.92905 1.81256 1.11145 1.11074 1.08921 1.23124 0.88740 0.87782 0.98683 1.68111 1.14722 1.13609 1.22639 1.19330 0.96031 0.95795 0.87128 1.21065 0.98528 0.94167 0.99493 1.21456 0.96376 0.99850 0.90947 1.21381 0.96833 0.94256 1.01238 1.21198 0.96727 0.96357 0.95474 1.18820 1.00969 0.95039 0.96575 0.90918 0.89292 0.96242 0.98285 0.95686 0.92142 0.78785 0.82352 0.81060 0.82547 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.00 127.69 1.15 2.74 16 2 N -0.51 -20.37 3.89 -722.15 -2.81 -23.19 16 3 C 0.17 8.36 3.25 85.56 0.28 8.63 16 4 C -0.51 -29.10 9.07 25.60 0.23 -28.86 16 5 H 0.06 3.40 7.35 -2.91 -0.02 3.38 16 6 C 0.02 1.44 5.47 84.65 0.46 1.90 16 7 N -0.93 -57.55 13.96 21.45 0.30 -57.25 16 8 Si 0.92 45.26 27.47 68.60 1.88 47.15 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -13.13 6.54 99.48 0.65 -12.48 16 12 C 0.22 7.63 4.67 39.49 0.18 7.82 16 13 C -0.15 -4.92 5.54 -21.02 -0.12 -5.03 16 14 C 0.28 10.04 10.29 88.33 0.91 10.94 16 15 N -0.45 -18.32 17.86 19.00 0.34 -17.98 16 16 C 0.19 4.84 10.87 85.35 0.93 5.77 16 17 N -0.48 -12.34 10.30 -187.93 -1.94 -14.27 16 18 C 0.14 3.52 6.60 40.16 0.27 3.78 16 19 C -0.11 -2.09 9.97 22.34 0.22 -1.86 16 20 C -0.07 -0.96 9.94 22.03 0.22 -0.74 16 21 C -0.12 -2.16 9.96 22.05 0.22 -1.94 16 22 C -0.08 -2.06 9.56 22.29 0.21 -1.85 16 23 C -0.11 -3.27 5.75 -21.19 -0.12 -3.39 16 24 H 0.07 3.04 6.86 -2.38 -0.02 3.03 16 25 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 26 H 0.02 0.75 5.57 -2.39 -0.01 0.73 16 27 H 0.00 -0.02 4.34 -2.39 -0.01 -0.03 16 28 H 0.03 1.22 7.48 -2.39 -0.02 1.20 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.13 3.86 7.59 -2.91 -0.02 3.84 16 Total: -1.00 -69.59 292.03 3.90 -65.68 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.08 Total: 1.93 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.05 Total: -2.08 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.11 Total: -112.68 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -69.59 3.90 -65.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037413159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.177 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds