Wall clock time and date at job start Mon Mar 30 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48501 * 109.46844 * 239.99938 * 3 2 1 5 5 H 1.48506 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47213 * 119.99625 * 3 2 1 7 7 C 1.37871 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99987 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47013 * 174.88398 * 9 7 2 11 11 C 1.46897 * 110.99853 * 162.22370 * 10 9 7 12 12 C 1.50705 * 109.47000 * 189.99883 * 11 10 9 13 13 C 1.38206 * 119.99852 * 105.00009 * 12 11 10 14 14 C 1.38428 * 120.00149 * 179.97438 * 13 12 11 15 15 F 1.35103 * 120.00294 * 179.72568 * 14 13 12 16 16 C 1.38470 * 119.99693 * 359.97438 * 14 13 12 17 17 C 1.38161 * 120.00295 * 0.02562 * 16 14 13 18 18 C 1.38425 * 120.00320 * 284.97617 * 12 11 10 19 19 F 1.35102 * 119.99556 * 0.02562 * 18 12 11 20 20 C 1.46901 * 111.00006 * 286.17711 * 10 9 7 21 21 C 1.52997 * 117.50119 * 8.29031 * 20 10 9 22 22 C 1.52998 * 117.50011 * 299.66589 * 20 10 9 23 23 H 0.96996 * 119.99918 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47334 * 54.88500 * 9 7 2 25 25 H 1.08998 * 109.47276 * 294.88411 * 9 7 2 26 26 H 1.08998 * 109.47469 * 70.00169 * 11 10 9 27 27 H 1.08994 * 109.47529 * 309.99895 * 11 10 9 28 28 H 1.08004 * 120.00068 * 0.02562 * 13 12 11 29 29 H 1.08001 * 119.99975 * 180.02562 * 16 14 13 30 30 H 1.07998 * 119.99965 * 180.02562 * 17 16 14 31 31 H 1.09005 * 115.54920 * 154.00151 * 20 10 9 32 32 H 1.08998 * 117.49605 * 359.97438 * 21 20 10 33 33 H 1.08997 * 117.50311 * 145.02296 * 21 20 10 34 34 H 1.09002 * 117.50106 * 214.98257 * 22 20 10 35 35 H 1.09003 * 117.50043 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2009 -3.6129 -0.1224 11 6 1.5824 -4.8801 0.2893 12 6 2.6414 -5.9480 0.3859 13 6 3.0873 -6.3689 1.6245 14 6 4.0597 -7.3501 1.7134 15 9 4.4996 -7.7576 2.9240 16 6 4.5852 -7.9103 0.5612 17 6 4.1395 -7.4896 -0.6770 18 6 3.1672 -6.5076 -0.7658 19 9 2.7313 -6.0962 -1.9766 20 6 2.7301 -3.7051 -1.4896 21 6 2.3870 -2.5713 -2.4579 22 6 1.7275 -3.9422 -2.6207 23 1 -0.4850 0.8400 -0.0004 24 1 0.5578 -2.5184 -0.8403 25 1 0.6945 -2.5974 0.9326 26 1 0.8347 -5.1756 -0.4468 27 1 1.1051 -4.7528 1.2609 28 1 2.6765 -5.9328 2.5232 29 1 5.3436 -8.6761 0.6305 30 1 4.5491 -7.9268 -1.5755 31 1 3.7129 -4.1672 -1.5832 32 1 1.7682 -1.7572 -2.0805 33 1 3.1441 -2.2871 -3.1887 34 1 2.0508 -4.5600 -3.4586 35 1 0.6752 -4.0303 -2.3503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043458723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:44 Heat of formation + Delta-G solvation = -19.869281 kcal Electronic energy + Delta-G solvation = -20462.595234 eV Core-core repulsion = 17098.109347 eV Total energy + Delta-G solvation = -3364.485886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.89559 -48.76677 -39.07533 -37.87852 -33.43068 -32.83355 -30.98352 -29.86104 -27.38840 -24.95569 -23.18478 -22.49249 -21.62812 -21.39621 -18.92861 -17.46361 -17.08280 -17.03725 -16.33676 -16.16561 -15.59441 -15.09992 -14.67131 -14.37547 -14.19918 -13.86177 -13.59537 -13.49797 -12.79166 -12.63620 -12.26088 -12.07002 -11.76828 -11.43189 -11.11806 -10.98114 -10.70032 -10.62700 -10.28486 -9.95419 -9.68331 -9.30134 -9.28323 -9.01256 -8.47096 -8.40982 -7.24847 -6.04539 -4.03629 1.01406 1.07923 3.33452 3.37505 3.38887 3.42116 4.17415 4.30587 4.41311 4.58691 4.66510 4.76774 4.95682 5.08121 5.20323 5.29170 5.61069 5.69851 5.74829 5.84034 5.87241 5.96398 6.01168 6.09087 6.16740 6.36055 6.38176 6.62816 6.77596 6.85347 7.11161 7.24109 7.43644 7.79972 8.04669 8.12300 8.47791 9.03215 9.57624 11.05274 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024825 B = 0.005485 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.628988 B = 5103.428245 C = 5712.212990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.500 5.500 11 C 0.090 3.910 12 C -0.064 4.064 13 C -0.112 4.112 14 C 0.084 3.916 15 F -0.140 7.140 16 C -0.135 4.135 17 C -0.131 4.131 18 C 0.097 3.903 19 F -0.121 7.121 20 C 0.035 3.965 21 C -0.176 4.176 22 C -0.216 4.216 23 H 0.262 0.738 24 H 0.007 0.993 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 -14.768 -1.061 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.061 3.939 10 N -0.223 5.223 11 C -0.038 4.038 12 C -0.065 4.065 13 C -0.132 4.132 14 C 0.064 3.936 15 F -0.119 7.119 16 C -0.155 4.155 17 C -0.150 4.150 18 C 0.077 3.923 19 F -0.100 7.100 20 C -0.075 4.075 21 C -0.213 4.213 22 C -0.256 4.256 23 H 0.072 0.928 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.113 -14.523 -0.719 15.774 hybrid contribution -0.161 0.737 -0.550 0.934 sum 5.952 -13.786 -1.269 15.070 Atomic orbital electron populations 1.69945 1.05987 1.26933 1.51051 1.24962 0.94841 0.99179 0.95707 0.86578 0.79450 0.82799 0.78747 1.20194 1.21441 1.20217 1.21049 0.93686 0.89416 1.49229 0.91738 1.19895 0.90075 0.87408 0.96488 1.62260 1.37967 1.01909 1.20199 1.21015 0.92262 0.88887 1.01630 1.19902 0.98583 0.97008 0.91026 1.20949 0.97040 0.96611 0.98581 1.17636 0.97674 0.97848 0.80405 1.91495 1.88428 1.89498 1.42446 1.20864 1.01924 1.02009 0.90655 1.20928 0.97751 0.97825 0.98506 1.17622 0.96980 0.96643 0.81068 1.91618 1.88128 1.88710 1.41516 1.22542 0.97135 1.03294 0.84506 1.23702 1.03439 0.93843 1.00341 1.23311 0.98724 1.01171 1.02354 0.92846 0.97564 0.95635 0.93707 0.89700 0.83744 0.84277 0.84150 0.88230 0.84344 0.90484 0.89996 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -13.37 6.58 -34.44 -0.23 -13.60 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 4.63 4.27 -4.97 -0.02 4.61 16 10 N -0.50 -10.58 4.66 -229.52 -1.07 -11.65 16 11 C 0.09 1.58 4.96 -4.98 -0.02 1.55 16 12 C -0.06 -0.97 5.31 -104.56 -0.56 -1.52 16 13 C -0.11 -1.54 9.65 -39.52 -0.38 -1.92 16 14 C 0.08 1.06 7.30 -39.43 -0.29 0.77 16 15 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 16 C -0.14 -1.49 10.02 -39.52 -0.40 -1.88 16 17 C -0.13 -1.51 10.02 -39.52 -0.40 -1.90 16 18 C 0.10 1.38 6.22 -39.43 -0.25 1.14 16 19 F -0.12 -1.86 11.49 2.25 0.03 -1.84 16 20 C 0.03 0.69 4.02 -67.72 -0.27 0.41 16 21 C -0.18 -3.64 8.94 -26.73 -0.24 -3.88 16 22 C -0.22 -4.01 7.42 -26.73 -0.20 -4.21 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.01 0.17 5.94 -51.93 -0.31 -0.13 16 25 H 0.03 0.68 7.77 -51.93 -0.40 0.27 16 26 H 0.04 0.79 7.11 -51.93 -0.37 0.42 16 27 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 28 H 0.14 1.83 8.00 -52.48 -0.42 1.41 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.10 1.90 6.87 -51.93 -0.36 1.55 16 32 H 0.14 3.38 4.80 -51.93 -0.25 3.13 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.36 7.47 -51.93 -0.39 0.98 16 35 H 0.08 1.61 7.15 -51.93 -0.37 1.24 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -28.37 290.88 -8.32 -36.69 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.08 Total: 2.04 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.34 Total: -19.03 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.33 Total: -36.79 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.37 -8.32 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043458723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.822 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds