Wall clock time and date at job start Mon Mar 30 2020 07:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47533 * 2 1 4 4 C 1.46899 * 111.00173 * 193.95244 * 3 2 1 5 5 C 1.50695 * 109.47296 * 66.04320 * 4 3 2 6 6 H 1.08008 * 120.00197 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00237 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99734 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47331 * 89.99776 * 9 7 5 11 11 H 1.48506 * 109.47227 * 210.00095 * 9 7 5 12 12 H 1.48501 * 109.46930 * 329.99482 * 9 7 5 13 13 C 1.39672 * 111.00389 * 69.99213 * 3 2 1 14 14 C 1.38940 * 120.07103 * 63.95901 * 13 3 2 15 15 C 1.38081 * 119.92257 * 180.25996 * 14 13 3 16 16 C 1.38311 * 120.07458 * 359.43770 * 15 14 13 17 17 C 1.50703 * 119.92515 * 180.27984 * 16 15 14 18 18 Cl 1.80291 * 109.47316 * 270.28134 * 17 16 15 19 19 C 1.38259 * 120.14972 * 0.56223 * 16 15 14 20 20 C 1.38130 * 120.07342 * 359.72130 * 19 16 15 21 21 C 1.50705 * 120.03540 * 179.97438 * 20 19 16 22 22 H 1.09000 * 109.47508 * 300.00972 * 1 2 3 23 23 H 1.09007 * 109.47016 * 60.00650 * 1 2 3 24 24 H 1.08996 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47508 * 239.99028 * 2 1 3 26 26 H 1.09008 * 109.46558 * 119.99610 * 2 1 3 27 27 H 1.09004 * 109.47154 * 186.04343 * 4 3 2 28 28 H 1.09004 * 109.46725 * 306.04172 * 4 3 2 29 29 H 0.97002 * 120.00097 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.03516 * 359.97438 * 14 13 3 31 31 H 1.08004 * 119.95927 * 179.72378 * 15 14 13 32 32 H 1.08999 * 109.46716 * 30.28524 * 17 16 15 33 33 H 1.09000 * 109.46703 * 150.27706 * 17 16 15 34 34 H 1.07998 * 119.96666 * 179.74384 * 19 16 15 35 35 H 1.09002 * 109.46892 * 270.01896 * 21 20 19 36 36 H 1.08996 * 109.47614 * 30.01515 * 21 20 19 37 37 H 1.08997 * 109.47328 * 150.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4500 1.4375 -0.3307 5 6 3.6536 0.9853 -1.7537 6 1 2.8053 0.6880 -2.3525 7 6 4.9229 0.9499 -2.2909 8 7 5.9559 1.3114 -1.5617 9 14 5.1754 0.3886 -4.0546 10 1 5.0921 1.5598 -4.9636 11 1 6.5117 -0.2458 -4.1858 12 1 4.1231 -0.5948 -4.4165 13 6 1.7660 2.0056 1.2252 14 6 2.3713 1.5336 2.3833 15 6 2.1141 2.1462 3.5938 16 6 1.2642 3.2358 3.6524 17 6 0.9908 3.9058 4.9744 18 17 -0.4315 3.1254 5.7609 19 6 0.6602 3.7081 2.5019 20 6 0.9086 3.0963 1.2886 21 6 0.2493 3.6115 0.0351 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.8114 2.4599 -0.2191 28 1 4.0027 0.7814 0.3418 29 1 6.8489 1.2862 -1.9395 30 1 3.0385 0.6856 2.3375 31 1 2.5808 1.7770 4.4951 32 1 1.8634 3.8054 5.6198 33 1 0.7805 4.9625 4.8095 34 1 -0.0061 4.5566 2.5517 35 1 -0.7035 3.1024 -0.1098 36 1 0.0776 4.6837 0.1292 37 1 0.8970 3.4210 -0.8206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050562784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:33 Heat of formation + Delta-G solvation = 5.867387 kcal Electronic energy + Delta-G solvation = -18234.362508 eV Core-core repulsion = 15422.789327 eV Total energy + Delta-G solvation = -2811.573181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71315 -36.76947 -35.73655 -32.91173 -32.45596 -31.23203 -29.83372 -27.14202 -26.80465 -24.82727 -22.49780 -22.42697 -20.80412 -19.49394 -16.68010 -15.87548 -15.54116 -15.02096 -14.86112 -14.40965 -14.07448 -13.81908 -13.57981 -13.06560 -12.86807 -12.79827 -12.40405 -12.22717 -11.95544 -11.49779 -11.36817 -11.17456 -11.06985 -10.88105 -10.74883 -10.59943 -10.41919 -10.38049 -10.25799 -10.01333 -9.31572 -8.49993 -8.43879 -8.01747 -7.45843 -6.08143 -4.10238 1.33250 1.72245 2.52490 3.29085 3.35361 3.38407 4.07513 4.37219 4.64232 4.74805 4.81496 5.19438 5.27568 5.31180 5.33033 5.59221 5.68514 5.82123 5.83756 5.96428 6.03631 6.13050 6.19853 6.27655 6.35109 6.55810 6.62074 6.72759 6.75723 6.80126 7.02804 7.12537 7.29134 7.36276 7.78674 8.02255 8.11143 8.56073 8.96793 9.54155 11.02536 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.004540 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.028695 B = 6166.265432 C = 6408.358522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 N -0.507 5.507 4 C 0.200 3.800 5 C -0.510 4.510 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.131 3.869 14 C -0.149 4.149 15 C -0.097 4.097 16 C -0.129 4.129 17 C 0.020 3.980 18 Cl -0.190 7.190 19 C -0.098 4.098 20 C -0.072 4.072 21 C -0.103 4.103 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.023 0.977 27 H 0.031 0.969 28 H -0.005 1.005 29 H 0.262 0.738 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 3.644 10.302 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 N -0.229 5.229 4 C 0.077 3.923 5 C -0.549 4.549 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.036 3.964 14 C -0.169 4.169 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.043 4.043 18 Cl -0.164 7.164 19 C -0.117 4.117 20 C -0.073 4.073 21 C -0.160 4.160 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.013 0.987 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.419 3.845 9.960 14.918 hybrid contribution 0.830 -0.756 -0.186 1.138 sum -9.590 3.090 9.774 14.037 Atomic orbital electron populations 1.21788 0.96373 1.00362 1.01711 1.22027 0.94283 0.88779 1.01334 1.59903 1.22116 1.16131 1.24762 1.19772 0.79106 0.97177 0.96272 1.21129 0.92726 1.43996 0.97012 0.91655 1.24977 0.95913 0.95505 0.98047 1.69959 0.98933 1.48142 1.36564 0.86491 0.77389 0.78869 0.84630 1.20591 1.21317 1.19800 1.19070 0.93604 0.94058 0.89620 1.21775 1.00844 1.01147 0.93174 1.20775 0.98029 0.95213 0.97563 1.19491 1.01100 0.98786 0.93546 1.23112 0.89746 0.97994 0.93405 1.98723 1.49565 1.84792 1.83312 1.20749 0.99445 0.99990 0.91522 1.19837 0.97259 0.95117 0.95058 1.20633 1.00336 0.98845 0.96160 0.93596 0.92199 0.93266 0.89202 0.95892 0.95112 0.98678 0.92847 0.86093 0.86618 0.88462 0.88435 0.86296 0.91950 0.92966 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.95 37.15 0.37 -1.93 16 2 C 0.06 1.19 5.44 -3.83 -0.02 1.17 16 3 N -0.51 -10.60 3.40 -172.48 -0.59 -11.19 16 4 C 0.20 5.07 4.30 -4.98 -0.02 5.05 16 5 C -0.51 -13.85 8.31 -34.44 -0.29 -14.14 16 6 H 0.07 1.75 7.23 -52.48 -0.38 1.37 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 13 C 0.13 2.47 3.72 -83.79 -0.31 2.15 16 14 C -0.15 -2.64 8.53 -39.38 -0.34 -2.97 16 15 C -0.10 -1.44 9.69 -39.61 -0.38 -1.82 16 16 C -0.13 -1.74 5.26 -104.59 -0.55 -2.29 16 17 C 0.02 0.20 6.78 36.01 0.24 0.45 16 18 Cl -0.19 -2.23 29.13 -51.86 -1.51 -3.74 16 19 C -0.10 -1.40 9.35 -39.61 -0.37 -1.77 16 20 C -0.07 -1.19 5.90 -104.42 -0.62 -1.81 16 21 C -0.10 -1.57 9.77 36.01 0.35 -1.22 16 22 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.85 6.60 -51.93 -0.34 1.51 16 26 H 0.02 0.43 7.07 -51.92 -0.37 0.06 16 27 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 28 H 0.00 -0.12 7.48 -51.93 -0.39 -0.51 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.12 2.21 7.14 -52.49 -0.37 1.84 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.09 1.55 7.46 -51.93 -0.39 1.16 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -28.76 320.78 -9.13 -37.89 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.56 Total: -0.89 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.03 Total: -17.64 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.15 Total: -36.61 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -1.51 Total: -3.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.76 -9.13 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050562784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.758 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds