Wall clock time and date at job start Mon Mar 30 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47533 * 2 1 4 4 C 1.46899 * 111.00173 * 193.95244 * 3 2 1 5 5 C 1.50695 * 109.47296 * 66.04320 * 4 3 2 6 6 H 1.08008 * 120.00197 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00237 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99734 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47331 * 89.99776 * 9 7 5 11 11 H 1.48506 * 109.47227 * 210.00095 * 9 7 5 12 12 H 1.48501 * 109.46930 * 329.99482 * 9 7 5 13 13 C 1.39672 * 111.00389 * 69.99213 * 3 2 1 14 14 C 1.38940 * 120.07103 * 63.95901 * 13 3 2 15 15 C 1.38081 * 119.92257 * 180.25996 * 14 13 3 16 16 C 1.38311 * 120.07458 * 359.43770 * 15 14 13 17 17 C 1.50703 * 119.92515 * 180.27984 * 16 15 14 18 18 Cl 1.80291 * 109.47316 * 270.28134 * 17 16 15 19 19 C 1.38259 * 120.14972 * 0.56223 * 16 15 14 20 20 C 1.38130 * 120.07342 * 359.72130 * 19 16 15 21 21 C 1.50705 * 120.03540 * 179.97438 * 20 19 16 22 22 H 1.09000 * 109.47508 * 300.00972 * 1 2 3 23 23 H 1.09007 * 109.47016 * 60.00650 * 1 2 3 24 24 H 1.08996 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47508 * 239.99028 * 2 1 3 26 26 H 1.09008 * 109.46558 * 119.99610 * 2 1 3 27 27 H 1.09004 * 109.47154 * 186.04343 * 4 3 2 28 28 H 1.09004 * 109.46725 * 306.04172 * 4 3 2 29 29 H 0.97002 * 120.00097 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.03516 * 359.97438 * 14 13 3 31 31 H 1.08004 * 119.95927 * 179.72378 * 15 14 13 32 32 H 1.08999 * 109.46716 * 30.28524 * 17 16 15 33 33 H 1.09000 * 109.46703 * 150.27706 * 17 16 15 34 34 H 1.07998 * 119.96666 * 179.74384 * 19 16 15 35 35 H 1.09002 * 109.46892 * 270.01896 * 21 20 19 36 36 H 1.08996 * 109.47614 * 30.01515 * 21 20 19 37 37 H 1.08997 * 109.47328 * 150.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4500 1.4375 -0.3307 5 6 3.6536 0.9853 -1.7537 6 1 2.8053 0.6880 -2.3525 7 6 4.9229 0.9499 -2.2909 8 7 5.9559 1.3114 -1.5617 9 14 5.1754 0.3886 -4.0546 10 1 5.0921 1.5598 -4.9636 11 1 6.5117 -0.2458 -4.1858 12 1 4.1231 -0.5948 -4.4165 13 6 1.7660 2.0056 1.2252 14 6 2.3713 1.5336 2.3833 15 6 2.1141 2.1462 3.5938 16 6 1.2642 3.2358 3.6524 17 6 0.9908 3.9058 4.9744 18 17 -0.4315 3.1254 5.7609 19 6 0.6602 3.7081 2.5019 20 6 0.9086 3.0963 1.2886 21 6 0.2493 3.6115 0.0351 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.8114 2.4599 -0.2191 28 1 4.0027 0.7814 0.3418 29 1 6.8489 1.2862 -1.9395 30 1 3.0385 0.6856 2.3375 31 1 2.5808 1.7770 4.4951 32 1 1.8634 3.8054 5.6198 33 1 0.7805 4.9625 4.8095 34 1 -0.0061 4.5566 2.5517 35 1 -0.7035 3.1024 -0.1098 36 1 0.0776 4.6837 0.1292 37 1 0.8970 3.4210 -0.8206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050562784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:32 Heat of formation + Delta-G solvation = -8.560479 kcal Electronic energy + Delta-G solvation = -18234.988147 eV Core-core repulsion = 15422.789327 eV Total energy + Delta-G solvation = -2812.198820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05391 -38.15037 -36.73164 -34.84916 -33.80640 -32.49129 -31.41597 -28.83267 -27.97765 -26.26331 -24.31488 -23.80203 -22.18883 -20.82066 -18.62646 -17.41317 -16.86715 -16.79291 -16.10912 -15.84370 -15.28596 -15.16719 -14.75460 -14.34677 -14.32105 -14.10182 -14.02152 -13.83056 -13.27502 -12.92730 -12.85357 -12.71492 -12.51642 -12.39066 -12.35593 -12.13179 -11.92104 -11.81580 -11.38913 -11.30488 -11.27621 -10.63627 -9.68364 -9.31069 -9.16637 -8.22068 -6.32730 0.15023 0.47477 1.41132 1.42399 1.53359 1.57754 2.39180 2.85336 3.10228 3.20358 3.65040 3.83746 4.02564 4.19236 4.27081 4.38156 4.41806 4.52811 4.63404 4.65466 4.79621 4.82653 4.95785 4.98673 5.05085 5.08907 5.10830 5.25410 5.32854 5.39316 5.53858 5.54750 5.63183 5.79733 5.99953 6.08944 6.21942 6.82370 6.84357 7.37054 8.89063 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.004540 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.028695 B = 6166.265432 C = 6408.358522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.061 3.939 3 N -0.503 5.503 4 C 0.221 3.779 5 C -0.523 4.523 6 H 0.066 0.934 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.094 3.906 14 C -0.168 4.168 15 C -0.098 4.098 16 C -0.117 4.117 17 C 0.023 3.977 18 Cl -0.198 7.198 19 C -0.093 4.093 20 C -0.082 4.082 21 C -0.098 4.098 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.018 0.982 27 H -0.004 1.004 28 H -0.036 1.036 29 H 0.264 0.736 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 4.576 10.923 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 N -0.225 5.225 4 C 0.097 3.903 5 C -0.561 4.561 6 H 0.085 0.915 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.001 4.001 14 C -0.189 4.189 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.039 4.039 18 Cl -0.171 7.171 19 C -0.112 4.112 20 C -0.082 4.082 21 C -0.154 4.154 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.014 0.986 28 H -0.018 1.018 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.214 4.776 10.593 16.858 hybrid contribution 1.355 -1.002 -0.253 1.704 sum -10.859 3.774 10.340 15.462 Atomic orbital electron populations 1.21651 0.93314 1.01943 1.01756 1.22052 0.96696 0.87818 0.99985 1.59790 1.18739 1.17141 1.26830 1.19305 0.81880 0.94011 0.95149 1.21435 0.93012 1.43851 0.97809 0.91541 1.25902 0.95527 0.95396 1.02602 1.70094 0.99444 1.49272 1.38674 0.85375 0.77526 0.78675 0.79012 1.19847 1.20879 1.18657 1.19209 0.96187 0.95800 0.88865 1.21711 1.01346 1.01401 0.94405 1.21015 0.98193 0.95429 0.97058 1.19847 0.99223 0.97575 0.95124 1.23265 0.90171 0.98751 0.91715 1.98731 1.50024 1.85103 1.83261 1.21107 0.99230 1.00283 0.90569 1.20063 0.97045 0.94422 0.96717 1.20593 0.99928 1.00634 0.94295 0.93410 0.92106 0.90892 0.91320 0.96420 0.98628 1.01795 0.92679 0.88271 0.84513 0.86509 0.85773 0.83025 0.90709 0.90362 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.95 71.98 0.72 -3.31 16 2 C 0.06 2.42 5.44 86.30 0.47 2.89 16 3 N -0.50 -22.08 3.40 -699.60 -2.38 -24.46 16 4 C 0.22 11.97 4.30 85.56 0.37 12.34 16 5 C -0.52 -29.54 8.31 25.60 0.21 -29.33 16 6 H 0.07 3.66 7.23 -2.91 -0.02 3.64 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 9 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 13 C 0.09 3.62 3.72 38.21 0.14 3.76 16 14 C -0.17 -6.17 8.53 22.40 0.19 -5.98 16 15 C -0.10 -2.82 9.69 22.25 0.22 -2.61 16 16 C -0.12 -2.86 5.26 -19.84 -0.10 -2.96 16 17 C 0.02 0.38 6.78 71.24 0.48 0.87 16 18 Cl -0.20 -4.01 29.13 -2.72 -0.08 -4.09 16 19 C -0.09 -2.40 9.35 22.25 0.21 -2.19 16 20 C -0.08 -2.64 5.90 -19.73 -0.12 -2.75 16 21 C -0.10 -2.87 9.77 71.24 0.70 -2.18 16 22 H 0.05 1.47 7.52 -2.39 -0.02 1.45 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.96 6.60 -2.39 -0.02 2.95 16 26 H 0.02 0.70 7.07 -2.38 -0.02 0.69 16 27 H 0.00 -0.26 8.06 -2.39 -0.02 -0.28 16 28 H -0.04 -2.09 7.48 -2.39 -0.02 -2.11 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.10 3.95 7.14 -2.91 -0.02 3.93 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.12 1.58 8.09 -2.39 -0.02 1.56 16 33 H 0.12 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 37 H 0.05 1.97 7.46 -2.39 -0.02 1.95 16 Total: -1.00 -64.98 320.78 4.84 -60.14 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.04 Total: 9.25 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 3.94 Total: -30.77 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.09 Total: -80.62 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 17 Polarization: -4.01 SS G_CDS: -0.08 Total: -4.09 kcal Total: -64.98 4.84 -60.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050562784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds