Wall clock time and date at job start Mon Mar 30 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.52999 * 109.47406 * 120.00094 * 2 1 3 5 5 N 1.46500 * 109.47287 * 174.99718 * 4 2 1 6 6 C 1.46492 * 120.00389 * 270.00284 * 5 4 2 7 7 C 1.50698 * 109.47272 * 270.00227 * 6 5 4 8 8 H 1.08006 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00347 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00084 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00371 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46793 * 59.99626 * 11 9 7 13 13 H 1.48499 * 109.47465 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47245 * 299.99959 * 11 9 7 15 15 C 1.37980 * 119.99428 * 90.00294 * 5 4 2 16 16 C 1.36481 * 125.59460 * 180.02562 * 15 5 4 17 17 C 1.39655 * 107.19834 * 179.97438 * 16 15 5 18 18 C 1.38075 * 106.71783 * 359.97438 * 17 16 15 19 19 C 1.41436 * 126.02060 * 179.97438 * 18 17 16 20 20 O 1.21724 * 120.00445 * 0.02562 * 19 18 17 21 21 O 1.35006 * 120.00062 * 180.02562 * 19 18 17 22 22 O 1.34086 * 125.60209 * 359.97438 * 15 5 4 23 23 H 1.08993 * 109.46912 * 299.99464 * 1 2 3 24 24 H 1.08995 * 109.47000 * 59.99836 * 1 2 3 25 25 H 1.09001 * 109.46912 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47073 * 240.00174 * 2 1 3 27 27 H 1.08999 * 109.46657 * 60.00029 * 3 2 1 28 28 H 1.08996 * 109.47381 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47221 * 300.00468 * 3 2 1 30 30 H 1.09003 * 109.47005 * 54.99854 * 4 2 1 31 31 H 1.09003 * 109.47096 * 295.00462 * 4 2 1 32 32 H 1.09003 * 109.47058 * 29.99565 * 6 5 4 33 33 H 1.08997 * 109.47148 * 149.99478 * 6 5 4 34 34 H 0.96996 * 120.00555 * 179.97438 * 10 9 7 35 35 H 1.08004 * 126.40301 * 359.97438 * 16 15 5 36 36 H 1.07997 * 126.64456 * 179.73692 * 17 16 15 37 37 H 0.96701 * 114.00259 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0660 1.5958 8 1 4.0437 -2.8971 2.6199 9 6 4.9220 -4.2638 1.2353 10 7 5.2859 -4.4692 -0.0117 11 14 5.1907 -5.5949 2.5180 12 1 3.8839 -5.9903 3.1022 13 1 5.8250 -6.7764 1.8800 14 1 6.0763 -5.0765 3.5914 15 6 4.2858 0.1724 1.7280 16 6 5.6505 0.1919 1.7361 17 6 6.0428 1.3720 2.3716 18 6 4.8852 2.0340 2.7298 19 6 4.8115 3.2771 3.4004 20 8 5.8324 3.8611 3.7138 21 8 3.6087 3.8160 3.6929 22 8 3.8341 1.2835 2.3273 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6055 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 3.4757 -2.3722 -0.2268 33 1 5.0851 -1.7020 0.1322 34 1 5.6942 -5.3118 -0.2654 35 1 6.3048 -0.5640 1.3275 36 1 7.0555 1.7012 2.5517 37 1 3.6595 4.6658 4.1516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050909333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:58 Heat of formation + Delta-G solvation = -84.958417 kcal Electronic energy + Delta-G solvation = -20780.162409 eV Core-core repulsion = 17523.941562 eV Total energy + Delta-G solvation = -3256.220848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11015 -39.62852 -37.48650 -35.84311 -34.50184 -32.65976 -32.38677 -29.19792 -27.73113 -26.96492 -25.61276 -23.52210 -22.44428 -20.57754 -20.24885 -19.42859 -18.06103 -17.41349 -16.76142 -16.38090 -16.11282 -15.12439 -14.91792 -14.53310 -14.10267 -13.81962 -13.42604 -12.83134 -12.71183 -12.60822 -12.46286 -12.27604 -12.05424 -11.67169 -11.48045 -11.38873 -11.18568 -10.99684 -10.78781 -10.69203 -10.56443 -10.49229 -10.23493 -10.04067 -9.53752 -9.04928 -8.64715 -6.76785 -6.22114 -4.33985 1.32610 2.71264 3.01369 3.21027 3.26156 3.29576 3.46618 3.56324 4.16290 4.29647 5.05674 5.07861 5.10889 5.26429 5.38525 5.59952 5.75963 5.77888 5.85009 5.96256 6.00884 6.06590 6.12706 6.15006 6.24596 6.36445 6.48028 6.56210 6.57347 6.72481 6.88204 7.04478 7.17727 7.64581 7.89601 7.93708 7.99081 8.17932 8.72381 9.33633 10.80657 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.006384 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.223978 B = 4385.194668 C = 5624.049318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.121 3.879 5 N -0.556 5.556 6 C 0.259 3.741 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.892 5.892 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.368 3.632 16 C -0.312 4.312 17 C -0.028 4.028 18 C -0.182 4.182 19 C 0.571 3.429 20 O -0.532 6.532 21 O -0.508 6.508 22 O -0.183 6.183 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 9.931 1.181 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.199 4.199 4 C -0.003 4.003 5 N -0.271 5.271 6 C 0.142 3.858 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.727 3.273 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.205 3.795 16 C -0.337 4.337 17 C -0.049 4.049 18 C -0.231 4.231 19 C 0.422 3.578 20 O -0.426 6.426 21 O -0.318 6.318 22 O -0.078 6.078 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.126 9.539 0.922 11.374 hybrid contribution 0.286 -0.405 0.914 1.040 sum -5.840 9.134 1.836 10.996 Atomic orbital electron populations 1.21749 0.94883 1.01770 1.01577 1.21591 0.95635 0.96867 0.99506 1.21812 1.01294 0.95622 1.01212 1.21614 0.80007 1.01516 0.97170 1.46809 1.04347 1.18093 1.57848 1.19521 0.94107 0.79328 0.92848 1.21451 1.41585 0.99185 0.95814 0.91966 1.24919 0.94880 0.98297 0.95573 1.69902 1.40845 1.25653 1.16552 0.86520 0.78651 0.80733 0.81386 1.20117 1.21062 1.19974 1.19289 0.89743 0.81914 0.88520 1.21042 0.92515 1.03043 1.17087 1.21933 0.97834 0.92327 0.92763 1.18935 0.85563 0.97202 1.21415 1.17518 0.81192 0.83126 0.75989 1.90958 1.35907 1.61821 1.53913 1.85157 1.33282 1.40191 1.73131 1.84036 1.34563 1.27698 1.61483 0.92759 0.92730 0.92483 0.90637 0.92567 0.92811 0.93240 0.89457 0.91368 0.93688 0.93961 0.92302 0.82234 0.82739 0.74144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.12 -1.65 3.13 -90.62 -0.28 -1.94 16 3 C -0.14 -2.04 8.04 37.16 0.30 -1.74 16 4 C 0.12 1.98 5.07 -4.04 -0.02 1.96 16 5 N -0.56 -10.87 2.41 -175.90 -0.42 -11.29 16 6 C 0.26 5.89 5.13 -5.20 -0.03 5.87 16 7 C -0.54 -13.73 9.39 -34.44 -0.32 -14.05 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 11 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.37 7.19 5.97 -15.42 -0.09 7.09 16 16 C -0.31 -6.00 9.92 -39.69 -0.39 -6.40 16 17 C -0.03 -0.49 10.58 -39.11 -0.41 -0.91 16 18 C -0.18 -3.30 6.99 -38.42 -0.27 -3.57 16 19 C 0.57 9.51 8.08 31.95 0.26 9.77 16 20 O -0.53 -9.61 17.52 -19.44 -0.34 -9.95 16 21 O -0.51 -6.89 13.53 -44.14 -0.60 -7.49 16 22 O -0.18 -3.42 8.73 -0.09 0.00 -3.42 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.05 0.88 6.08 -51.93 -0.32 0.57 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 31 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 32 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.16 3.16 7.18 -52.48 -0.38 2.78 16 36 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.40 3.28 8.98 45.56 0.41 3.69 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -28.67 319.11 -6.23 -34.90 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.37 Total: 4.06 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.02 Total: -3.59 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.31 Total: -34.61 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.94 Total: -20.87 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.67 -6.23 -34.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050909333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.056 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds