Wall clock time and date at job start Mon Mar 30 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.52999 * 109.47406 * 120.00094 * 2 1 3 5 5 N 1.46500 * 109.47287 * 174.99718 * 4 2 1 6 6 C 1.46492 * 120.00389 * 270.00284 * 5 4 2 7 7 C 1.50698 * 109.47272 * 270.00227 * 6 5 4 8 8 H 1.08006 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00347 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00084 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00371 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46793 * 59.99626 * 11 9 7 13 13 H 1.48499 * 109.47465 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47245 * 299.99959 * 11 9 7 15 15 C 1.37980 * 119.99428 * 90.00294 * 5 4 2 16 16 C 1.36481 * 125.59460 * 180.02562 * 15 5 4 17 17 C 1.39655 * 107.19834 * 179.97438 * 16 15 5 18 18 C 1.38075 * 106.71783 * 359.97438 * 17 16 15 19 19 C 1.41436 * 126.02060 * 179.97438 * 18 17 16 20 20 O 1.21724 * 120.00445 * 0.02562 * 19 18 17 21 21 O 1.35006 * 120.00062 * 180.02562 * 19 18 17 22 22 O 1.34086 * 125.60209 * 359.97438 * 15 5 4 23 23 H 1.08993 * 109.46912 * 299.99464 * 1 2 3 24 24 H 1.08995 * 109.47000 * 59.99836 * 1 2 3 25 25 H 1.09001 * 109.46912 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47073 * 240.00174 * 2 1 3 27 27 H 1.08999 * 109.46657 * 60.00029 * 3 2 1 28 28 H 1.08996 * 109.47381 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47221 * 300.00468 * 3 2 1 30 30 H 1.09003 * 109.47005 * 54.99854 * 4 2 1 31 31 H 1.09003 * 109.47096 * 295.00462 * 4 2 1 32 32 H 1.09003 * 109.47058 * 29.99565 * 6 5 4 33 33 H 1.08997 * 109.47148 * 149.99478 * 6 5 4 34 34 H 0.96996 * 120.00555 * 179.97438 * 10 9 7 35 35 H 1.08004 * 126.40301 * 359.97438 * 16 15 5 36 36 H 1.07997 * 126.64456 * 179.73692 * 17 16 15 37 37 H 0.96701 * 114.00259 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0660 1.5958 8 1 4.0437 -2.8971 2.6199 9 6 4.9220 -4.2638 1.2353 10 7 5.2859 -4.4692 -0.0117 11 14 5.1907 -5.5949 2.5180 12 1 3.8839 -5.9903 3.1022 13 1 5.8250 -6.7764 1.8800 14 1 6.0763 -5.0765 3.5914 15 6 4.2858 0.1724 1.7280 16 6 5.6505 0.1919 1.7361 17 6 6.0428 1.3720 2.3716 18 6 4.8852 2.0340 2.7298 19 6 4.8115 3.2771 3.4004 20 8 5.8324 3.8611 3.7138 21 8 3.6087 3.8160 3.6929 22 8 3.8341 1.2835 2.3273 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6055 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 3.4757 -2.3722 -0.2268 33 1 5.0851 -1.7020 0.1322 34 1 5.6942 -5.3118 -0.2654 35 1 6.3048 -0.5640 1.3275 36 1 7.0555 1.7012 2.5517 37 1 3.6595 4.6658 4.1516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050909333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:58 Heat of formation + Delta-G solvation = -101.483238 kcal Electronic energy + Delta-G solvation = -20780.878979 eV Core-core repulsion = 17523.941562 eV Total energy + Delta-G solvation = -3256.937418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.57233 -40.92110 -38.89535 -37.07758 -35.93719 -34.50970 -33.82614 -30.71016 -29.41812 -28.05069 -27.00269 -25.27406 -23.85940 -22.08596 -21.54460 -20.76785 -19.42335 -18.79488 -18.57238 -17.78902 -17.61718 -16.83885 -16.27686 -15.87409 -15.59098 -15.08131 -14.68937 -14.43025 -14.21469 -14.02436 -13.92380 -13.74530 -13.30851 -13.11619 -12.88419 -12.69577 -12.60503 -12.58473 -12.41866 -12.16700 -11.92091 -11.87174 -11.69174 -11.59588 -11.06790 -10.64127 -10.61910 -8.43919 -8.06221 -6.38663 -0.06953 1.20433 1.41503 1.43122 1.50333 1.54326 2.07340 2.28990 2.39939 2.81085 3.07468 3.83836 3.93368 3.96567 4.14771 4.29515 4.47902 4.61258 4.64126 4.70778 4.76090 4.83501 4.85418 4.98152 5.01319 5.08091 5.16097 5.20527 5.32746 5.40271 5.43769 5.49477 5.61120 5.71125 5.98601 6.28542 6.48181 6.74402 6.97776 7.32546 8.81551 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.006384 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.223978 B = 4385.194668 C = 5624.049318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.118 3.882 5 N -0.563 5.563 6 C 0.277 3.723 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.023 3.977 10 N -0.920 5.920 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.275 1.275 15 C 0.358 3.642 16 C -0.328 4.328 17 C -0.025 4.025 18 C -0.189 4.189 19 C 0.581 3.419 20 O -0.545 6.545 21 O -0.501 6.501 22 O -0.180 6.180 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.269 0.731 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 10.829 2.060 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.192 4.192 4 C -0.004 4.004 5 N -0.278 5.278 6 C 0.158 3.842 7 C -0.588 4.588 8 H 0.072 0.928 9 C -0.178 4.178 10 N -0.559 5.559 11 Si 0.783 3.217 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.196 3.804 16 C -0.353 4.353 17 C -0.045 4.045 18 C -0.237 4.237 19 C 0.431 3.569 20 O -0.441 6.441 21 O -0.313 6.313 22 O -0.075 6.075 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.194 0.806 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -7.130 10.478 1.821 12.804 hybrid contribution 0.575 -0.558 0.677 1.049 sum -6.556 9.920 2.498 12.150 Atomic orbital electron populations 1.21706 0.92372 1.02460 1.02783 1.21535 0.97605 0.96307 0.97607 1.21742 0.99571 0.95788 1.02122 1.21790 0.78225 1.01752 0.98653 1.46603 1.05468 1.17540 1.58205 1.19048 0.93148 0.79900 0.92099 1.21673 1.41293 1.00028 0.95847 0.92809 1.25628 0.94686 1.00244 0.97198 1.69992 1.41637 1.26239 1.18039 0.85614 0.78650 0.78374 0.79096 1.19429 1.20569 1.20033 1.19277 0.89802 0.82304 0.89063 1.21053 0.92602 1.03697 1.17954 1.22143 0.98916 0.91476 0.91949 1.19369 0.85532 0.97749 1.21090 1.17273 0.81698 0.82513 0.75422 1.90960 1.36672 1.62064 1.54378 1.85101 1.31402 1.41812 1.72990 1.84025 1.34747 1.27374 1.61377 0.91831 0.91217 0.92108 0.91984 0.92447 0.95338 0.91433 0.89902 0.90754 0.94745 0.95845 0.92192 0.83500 0.80630 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.19 71.98 0.66 -2.18 16 2 C -0.11 -3.06 3.13 -10.79 -0.03 -3.10 16 3 C -0.13 -3.72 8.04 71.98 0.58 -3.14 16 4 C 0.12 3.87 5.07 86.38 0.44 4.31 16 5 N -0.56 -22.39 2.41 -821.05 -1.98 -24.37 16 6 C 0.28 12.99 5.13 85.63 0.44 13.42 16 7 C -0.55 -28.31 9.39 25.60 0.24 -28.07 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.02 1.20 5.46 84.65 0.46 1.66 16 10 N -0.92 -50.28 13.29 21.45 0.28 -49.99 16 11 Si 0.96 41.59 29.54 68.60 2.03 43.61 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.36 14.08 5.97 83.31 0.50 14.58 16 16 C -0.33 -12.83 9.92 22.20 0.22 -12.61 16 17 C -0.02 -0.85 10.58 22.57 0.24 -0.61 16 18 C -0.19 -6.61 6.99 23.02 0.16 -6.45 16 19 C 0.58 18.10 8.08 68.61 0.55 18.65 16 20 O -0.55 -18.55 17.52 19.10 0.33 -18.21 16 21 O -0.50 -12.14 13.53 -56.56 -0.77 -12.91 16 22 O -0.18 -6.62 8.73 -6.82 -0.06 -6.68 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 28 H 0.03 0.92 6.08 -2.39 -0.01 0.90 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 31 H 0.07 2.32 7.70 -2.39 -0.02 2.30 16 32 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.02 1.18 6.78 -2.39 -0.02 1.17 16 34 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.15 6.07 7.18 -2.91 -0.02 6.05 16 36 H 0.18 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.43 5.55 8.98 -74.06 -0.67 4.88 16 Total: -1.00 -60.33 319.11 4.71 -55.62 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.41 Total: 16.46 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.46 Total: -3.53 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.70 Total: -74.37 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.49 Total: -37.80 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -60.33 4.71 -55.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050909333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.861 kcal (2) G-P(sol) polarization free energy of solvation -60.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds