Wall clock time and date at job start Mon Mar 30 2020 07:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47062 * 120.00116 * 2 1 3 5 5 H 1.07993 * 120.00232 * 120.00059 * 4 2 1 6 6 C 1.37883 * 119.99785 * 300.00214 * 4 2 1 7 7 N 1.31519 * 119.99758 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00196 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46769 * 90.00251 * 8 6 4 10 10 H 1.48501 * 109.46822 * 209.99917 * 8 6 4 11 11 H 1.48496 * 109.46922 * 330.00396 * 8 6 4 12 12 N 1.46896 * 109.47169 * 240.00299 * 2 1 3 13 13 C 1.46896 * 111.00003 * 183.95752 * 12 2 1 14 14 C 1.46896 * 111.00376 * 60.00051 * 12 2 1 15 15 H 1.09003 * 109.46851 * 308.54963 * 14 12 2 16 16 C 1.52995 * 109.47094 * 68.54582 * 14 12 2 17 17 C 1.50698 * 109.47389 * 188.54797 * 14 12 2 18 18 C 1.38246 * 119.98555 * 218.96719 * 17 14 12 19 19 C 1.38213 * 120.01110 * 179.72597 * 18 17 14 20 20 C 1.38362 * 119.98610 * 0.54464 * 19 18 17 21 21 Cl 1.73600 * 120.01090 * 179.74871 * 20 19 18 22 22 C 1.38348 * 119.97167 * 359.73160 * 20 19 18 23 23 C 1.38218 * 119.98945 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.47502 * 299.99951 * 1 2 3 25 25 H 1.08993 * 109.46966 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46984 * 60.00015 * 1 2 3 27 27 H 0.96992 * 119.99992 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47404 * 66.57412 * 13 12 2 29 29 H 1.09002 * 109.47437 * 186.58203 * 13 12 2 30 30 H 1.09005 * 109.46852 * 306.57619 * 13 12 2 31 31 H 1.09002 * 109.47308 * 299.99916 * 16 14 12 32 32 H 1.09000 * 109.47158 * 59.99963 * 16 14 12 33 33 H 1.09008 * 109.47338 * 180.02562 * 16 14 12 34 34 H 1.07995 * 119.99188 * 359.97438 * 18 17 14 35 35 H 1.07995 * 120.01001 * 180.27318 * 19 18 17 36 36 H 1.07997 * 120.00605 * 179.97438 * 22 20 19 37 37 H 1.08002 * 119.99358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5566 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9952 3.9072 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4210 15 1 0.4685 0.1093 -2.3675 16 6 2.2281 1.3383 -2.5521 17 6 1.8899 -0.8744 -3.6191 18 6 2.3170 -0.2763 -4.7900 19 6 2.6354 -1.0540 -5.8873 20 6 2.5159 -2.4306 -5.8174 21 17 2.9094 -3.4076 -7.1973 22 6 2.0830 -3.0282 -4.6471 23 6 1.7706 -2.2498 -3.5484 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.9031 -0.5281 4.4375 28 1 3.7968 -1.4499 -0.3738 29 1 3.8288 -1.2048 -2.1365 30 1 3.9170 0.1957 -1.0415 31 1 1.9813 1.9518 -1.6856 32 1 3.3083 1.2027 -2.6055 33 1 1.8783 1.8328 -3.4584 34 1 2.4056 0.7986 -4.8460 35 1 2.9732 -0.5869 -6.8006 36 1 1.9891 -4.1027 -4.5920 37 1 1.4331 -2.7163 -2.6347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062014205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:21 Heat of formation + Delta-G solvation = 16.232586 kcal Electronic energy + Delta-G solvation = -18443.125242 eV Core-core repulsion = 15632.001530 eV Total energy + Delta-G solvation = -2811.123712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89394 -38.91920 -37.32025 -35.12820 -33.24325 -32.07123 -31.32585 -29.73786 -27.45949 -26.10477 -24.65536 -23.43041 -22.18419 -20.22647 -18.89436 -18.11144 -17.27155 -16.58619 -16.25563 -15.93209 -15.45484 -15.11813 -14.74494 -14.56023 -14.36678 -14.34131 -14.03725 -13.65796 -13.08679 -12.99396 -12.86094 -12.65200 -12.55765 -12.30426 -12.17583 -12.11892 -11.97019 -11.67940 -11.55561 -11.36497 -10.99036 -10.70871 -9.90523 -9.43063 -8.93569 -8.25650 -6.28288 0.22980 0.43122 1.20728 1.31607 1.35992 1.45909 2.33320 2.71708 3.08426 3.24135 3.79838 3.94882 4.04704 4.24998 4.32295 4.43216 4.50610 4.58260 4.64903 4.66744 4.71981 4.75521 4.85121 4.90904 4.92453 5.12672 5.13899 5.22096 5.29154 5.33932 5.36452 5.53347 5.67399 5.72590 5.92616 6.07628 6.39617 6.73816 6.79742 7.36528 8.90731 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040275 B = 0.004444 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.057483 B = 6298.881528 C = 6582.740187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.186 3.814 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.042 0.958 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.302 1.302 11 H -0.249 1.249 12 N -0.525 5.525 13 C 0.049 3.951 14 C 0.106 3.894 15 H 0.097 0.903 16 C -0.182 4.182 17 C -0.070 4.070 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.047 4.047 21 Cl -0.076 7.076 22 C -0.119 4.119 23 C -0.091 4.091 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.264 0.736 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 2.300 -20.699 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.078 3.922 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.774 3.226 9 H -0.193 1.193 10 H -0.230 1.230 11 H -0.173 1.173 12 N -0.248 5.248 13 C -0.099 4.099 14 C -0.002 4.002 15 H 0.115 0.885 16 C -0.240 4.240 17 C -0.070 4.070 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.074 4.074 21 Cl -0.047 7.047 22 C -0.138 4.138 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.284 1.724 -20.629 20.740 hybrid contribution 0.096 0.896 0.877 1.257 sum -1.188 2.620 -19.752 19.960 Atomic orbital electron populations 1.22139 0.97061 1.01453 0.99507 1.19522 0.92458 0.92064 0.88156 0.98395 1.21260 1.30649 1.12304 0.90056 0.94005 1.25752 0.97427 0.99848 0.95441 1.70036 1.47972 1.42537 0.98525 0.85892 0.79334 0.80228 0.77133 1.19265 1.23008 1.17270 1.62044 1.10231 1.51466 1.01107 1.22056 0.88004 0.99242 1.00645 1.20749 1.00477 0.91251 0.87728 0.88504 1.22484 1.01463 0.97360 1.02718 1.19992 0.98230 0.94063 0.94742 1.21311 0.98442 1.01313 0.91398 1.21224 1.00538 0.91183 1.00159 1.21050 1.04670 0.92341 0.89329 1.98353 1.92702 1.71070 1.42604 1.21184 0.99997 1.01041 0.91542 1.21091 0.98359 0.93605 0.97932 0.94851 0.92667 0.91650 0.92681 0.93739 0.91457 0.96374 0.93452 0.92190 0.89297 0.82929 0.83120 0.84412 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 8.46 71.98 0.61 -5.17 16 2 C 0.19 8.24 1.41 44.17 0.06 8.30 16 3 H 0.00 -0.06 5.62 -2.39 -0.01 -0.07 16 4 C -0.50 -27.97 8.57 25.60 0.22 -27.75 16 5 H 0.04 2.60 6.66 -2.91 -0.02 2.58 16 6 C 0.01 0.70 5.45 84.66 0.46 1.16 16 7 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 8 Si 0.95 44.09 24.37 68.60 1.67 45.76 16 9 H -0.27 -11.83 6.87 99.48 0.68 -11.15 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.25 -10.65 6.53 99.48 0.65 -10.00 16 12 N -0.53 -19.85 3.83 -880.62 -3.37 -23.22 16 13 C 0.05 1.83 8.03 127.69 1.03 2.86 16 14 C 0.11 3.10 2.52 44.17 0.11 3.21 16 15 H 0.10 2.79 5.89 -2.39 -0.01 2.78 16 16 C -0.18 -4.65 7.49 71.98 0.54 -4.11 16 17 C -0.07 -1.80 4.33 -19.86 -0.09 -1.88 16 18 C -0.11 -2.21 9.12 22.27 0.20 -2.00 16 19 C -0.11 -2.21 9.83 22.29 0.22 -1.99 16 20 C -0.05 -1.04 6.32 22.33 0.14 -0.90 16 21 Cl -0.08 -1.52 28.96 -2.72 -0.08 -1.60 16 22 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 23 C -0.09 -2.47 8.84 22.27 0.20 -2.28 16 24 H 0.03 1.39 3.27 -2.39 -0.01 1.38 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 26 H 0.06 2.13 6.23 -2.38 -0.01 2.12 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.04 1.94 6.49 -2.39 -0.02 1.92 16 29 H 0.07 2.20 6.66 -2.39 -0.02 2.19 16 30 H 0.02 0.67 6.86 -2.38 -0.02 0.65 16 31 H 0.05 1.37 6.64 -2.39 -0.02 1.36 16 32 H 0.06 1.55 6.58 -2.39 -0.02 1.53 16 33 H 0.09 1.68 6.66 -2.38 -0.02 1.66 16 34 H 0.15 2.48 5.99 -2.91 -0.02 2.46 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.13 3.87 7.69 -2.91 -0.02 3.85 16 Total: -1.00 -62.49 295.63 3.44 -59.05 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.00 Total: 11.80 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.92 Total: -33.19 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.07 Total: -81.83 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.76 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -62.49 3.44 -59.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062014205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.282 kcal (2) G-P(sol) polarization free energy of solvation -62.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds