Wall clock time and date at job start Mon Mar 30 2020 07:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46942 * 2 1 4 4 C 1.50694 * 109.46731 * 240.00032 * 2 1 3 5 5 H 1.08002 * 120.00314 * 244.58330 * 4 2 1 6 6 C 1.37882 * 120.00193 * 64.58642 * 4 2 1 7 7 N 1.31509 * 120.00105 * 196.95277 * 6 4 2 8 8 Si 1.86806 * 119.99805 * 16.95324 * 6 4 2 9 9 H 1.48498 * 109.47067 * 92.13093 * 8 6 4 10 10 H 1.48493 * 109.47030 * 212.13103 * 8 6 4 11 11 H 1.48505 * 109.46761 * 332.12984 * 8 6 4 12 12 N 1.46902 * 109.47094 * 120.00062 * 2 1 3 13 13 C 1.46901 * 110.99875 * 55.28152 * 12 2 1 14 14 C 1.46898 * 111.00121 * 291.32574 * 12 2 1 15 15 H 1.09003 * 109.46820 * 60.81669 * 14 12 2 16 16 C 1.53001 * 109.47002 * 180.81411 * 14 12 2 17 17 C 1.50700 * 109.47102 * 300.81486 * 14 12 2 18 18 C 1.38243 * 119.98529 * 133.56750 * 17 14 12 19 19 C 1.38213 * 120.00901 * 179.97438 * 18 17 14 20 20 C 1.38355 * 119.99077 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.01286 * 180.02562 * 20 19 18 22 22 C 1.38353 * 119.97022 * 0.27464 * 20 19 18 23 23 C 1.38220 * 119.98662 * 359.45018 * 22 20 19 24 24 H 1.09007 * 109.46881 * 305.99203 * 1 2 3 25 25 H 1.08995 * 109.47383 * 65.98980 * 1 2 3 26 26 H 1.08996 * 109.47139 * 185.99681 * 1 2 3 27 27 H 0.97011 * 120.00064 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47226 * 289.55380 * 13 12 2 29 29 H 1.09000 * 109.47102 * 49.55009 * 13 12 2 30 30 H 1.09001 * 109.46788 * 169.55135 * 13 12 2 31 31 H 1.08998 * 109.47317 * 60.93043 * 16 14 12 32 32 H 1.09002 * 109.46894 * 180.93065 * 16 14 12 33 33 H 1.08999 * 109.47258 * 300.92845 * 16 14 12 34 34 H 1.08001 * 119.99363 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.00426 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.00427 * 179.72660 * 22 20 19 37 37 H 1.07996 * 119.98899 * 180.27406 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5908 -1.6297 -1.1332 6 6 1.7789 -0.1868 -2.4806 7 7 1.9101 -0.9423 -3.5489 8 14 1.2493 1.5960 -2.6566 9 1 2.4464 2.4498 -2.8643 10 1 0.3383 1.7289 -3.8217 11 1 0.5422 2.0263 -1.4237 12 7 2.0197 -0.6925 1.1994 13 6 1.4588 -2.0471 1.2911 14 6 1.7250 0.0825 2.4120 15 1 0.6466 0.2068 2.5105 16 6 2.2668 -0.6593 3.6356 17 6 2.3800 1.4362 2.3145 18 6 1.6641 2.5748 2.6344 19 6 2.2644 3.8165 2.5456 20 6 3.5819 3.9200 2.1361 21 17 4.3368 5.4794 2.0251 22 6 4.2959 2.7807 1.8102 23 6 3.6962 1.5390 1.9048 24 1 -0.3633 0.6040 0.8315 25 1 -0.3634 0.4181 -0.9387 26 1 -0.3633 -1.0220 0.1074 27 1 1.7315 -0.5740 -4.4284 28 1 0.3964 -1.9852 1.5267 29 1 1.5903 -2.5600 0.3384 30 1 1.9735 -2.6011 2.0761 31 1 3.3474 -0.7691 3.5449 32 1 2.0336 -0.0923 4.5369 33 1 1.8053 -1.6448 3.6968 34 1 0.6355 2.4939 2.9536 35 1 1.7052 4.7059 2.7959 36 1 5.3231 2.8612 1.4862 37 1 4.2549 0.6492 1.6546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062014206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:24 Heat of formation + Delta-G solvation = 9.518565 kcal Electronic energy + Delta-G solvation = -18791.316345 eV Core-core repulsion = 15979.901492 eV Total energy + Delta-G solvation = -2811.414854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83703 -38.85964 -37.33053 -35.09628 -33.32240 -31.97257 -31.35779 -29.26901 -27.19692 -26.96006 -24.12714 -23.51696 -22.31635 -20.27909 -18.72102 -18.01021 -17.18815 -16.63696 -16.48203 -15.75304 -15.31397 -15.15068 -14.72492 -14.42068 -14.31021 -14.17358 -13.75574 -13.59496 -13.53751 -13.11301 -12.72189 -12.66425 -12.55004 -12.42449 -12.19377 -12.15463 -11.81131 -11.70817 -11.55158 -11.44804 -11.20777 -10.48832 -9.92287 -9.45061 -8.88336 -8.28031 -6.21765 0.21431 0.41190 1.17061 1.29999 1.36799 1.42988 2.34894 2.70068 3.07265 3.29942 3.79811 3.92479 4.01735 4.33609 4.39568 4.48063 4.51574 4.57968 4.62726 4.69765 4.74455 4.80053 4.88206 4.98860 5.02089 5.08894 5.14603 5.28498 5.31808 5.35739 5.39834 5.55202 5.66272 5.70827 5.90959 6.12317 6.48530 6.76943 6.83261 7.40208 8.88577 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.007847 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.111294 B = 3567.307986 C = 4706.269575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.192 3.808 3 H 0.031 0.969 4 C -0.500 4.500 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.940 5.940 8 Si 0.914 3.086 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.235 1.235 12 N -0.530 5.530 13 C 0.036 3.964 14 C 0.111 3.889 15 H 0.050 0.950 16 C -0.133 4.133 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.050 4.050 21 Cl -0.075 7.075 22 C -0.123 4.123 23 C -0.086 4.086 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 8.327 16.309 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 H 0.049 0.951 4 C -0.539 4.539 5 H 0.060 0.940 6 C -0.174 4.174 7 N -0.580 5.580 8 Si 0.739 3.261 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.158 1.158 12 N -0.253 5.253 13 C -0.112 4.112 14 C 0.003 3.997 15 H 0.067 0.933 16 C -0.191 4.191 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.076 4.076 21 Cl -0.047 7.047 22 C -0.142 4.142 23 C -0.105 4.105 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.171 8.403 16.088 18.151 hybrid contribution -0.790 0.736 -1.005 1.475 sum -0.619 9.139 15.083 17.647 Atomic orbital electron populations 1.22660 1.00145 1.00662 0.99815 1.19412 0.89764 0.94202 0.88271 0.95110 1.21123 1.33896 1.08895 0.89946 0.94020 1.25552 0.95509 1.00734 0.95628 1.70102 1.51800 1.37040 0.99095 0.86348 0.78560 0.82337 0.78819 1.20807 1.21462 1.15831 1.62162 1.59239 1.02650 1.01275 1.22267 0.96908 0.90382 1.01660 1.20699 0.97106 0.90235 0.91657 0.93255 1.21828 1.01694 1.00274 0.95262 1.20055 0.94255 0.95255 0.97637 1.21236 1.00676 0.90961 1.00066 1.21195 0.92889 0.99022 1.00250 1.21038 0.94740 0.86369 1.05487 1.98343 1.82125 1.27266 1.96924 1.21229 1.01104 0.91159 1.00692 1.21068 0.95153 0.97186 0.97057 0.93185 0.94572 0.93043 0.92798 0.95501 0.93408 0.90348 0.92278 0.90797 0.91336 0.83434 0.83137 0.84375 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.13 7.82 71.98 0.56 -6.56 16 2 C 0.19 8.55 1.61 44.17 0.07 8.62 16 3 H 0.03 1.44 5.07 -2.39 -0.01 1.43 16 4 C -0.50 -27.68 8.33 25.60 0.21 -27.47 16 5 H 0.04 2.57 7.16 -2.91 -0.02 2.55 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 8 Si 0.91 44.15 25.81 68.60 1.77 45.92 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.24 -10.41 5.60 99.48 0.56 -9.86 16 12 N -0.53 -19.82 4.09 -880.59 -3.60 -23.42 16 13 C 0.04 1.25 7.93 127.69 1.01 2.26 16 14 C 0.11 3.27 2.02 44.17 0.09 3.36 16 15 H 0.05 1.41 6.53 -2.39 -0.02 1.39 16 16 C -0.13 -3.09 8.82 71.98 0.63 -2.46 16 17 C -0.07 -2.12 3.45 -19.86 -0.07 -2.19 16 18 C -0.11 -2.85 9.67 22.26 0.22 -2.64 16 19 C -0.12 -2.85 9.83 22.29 0.22 -2.63 16 20 C -0.05 -1.35 6.32 22.32 0.14 -1.21 16 21 Cl -0.08 -1.83 28.96 -2.72 -0.08 -1.91 16 22 C -0.12 -3.56 9.83 22.29 0.22 -3.34 16 23 C -0.09 -2.69 8.71 22.27 0.19 -2.50 16 24 H 0.05 1.74 6.93 -2.38 -0.02 1.72 16 25 H 0.04 1.57 5.14 -2.39 -0.01 1.56 16 26 H 0.05 2.07 6.24 -2.39 -0.01 2.05 16 27 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 28 H 0.03 0.86 6.72 -2.39 -0.02 0.85 16 29 H 0.05 2.00 6.45 -2.39 -0.02 1.98 16 30 H 0.08 2.27 6.61 -2.39 -0.02 2.25 16 31 H 0.06 1.44 8.05 -2.39 -0.02 1.42 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.47 6.45 -2.39 -0.02 1.45 16 34 H 0.15 3.06 7.99 -2.91 -0.02 3.04 16 35 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.13 4.29 7.92 -2.91 -0.02 4.27 16 Total: -1.00 -62.90 302.08 3.25 -59.65 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.91 Total: 12.57 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.95 Total: -34.96 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.30 Total: -81.28 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.77 Total: 45.92 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -62.90 3.25 -59.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062014206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -62.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds