Wall clock time and date at job start Mon Mar 30 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38122 * 119.96260 * 2 1 4 4 C 1.38888 * 119.92390 * 180.02562 * 3 2 1 5 5 N 1.39672 * 120.07746 * 179.97438 * 4 3 2 6 6 C 1.46508 * 119.99530 * 354.24706 * 5 4 3 7 7 C 1.46500 * 120.00258 * 174.24937 * 5 4 3 8 8 H 1.09001 * 109.47066 * 4.75188 * 7 5 4 9 9 C 1.53003 * 109.46918 * 244.74868 * 7 5 4 10 10 C 1.50698 * 109.46772 * 124.75374 * 7 5 4 11 11 H 1.08001 * 120.00525 * 359.97438 * 10 7 5 12 12 C 1.37882 * 120.00015 * 180.02562 * 10 7 5 13 13 N 1.31523 * 119.99361 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00363 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47183 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46876 * 119.99713 * 14 12 10 17 17 H 1.48497 * 109.47423 * 239.99669 * 14 12 10 18 18 C 1.38935 * 119.85147 * 359.97438 * 4 3 2 19 19 C 1.38085 * 119.92424 * 0.02562 * 18 4 3 20 20 C 1.38263 * 119.96087 * 180.27009 * 2 1 3 21 21 C 1.50705 * 119.92723 * 0.02562 * 20 2 1 22 22 Cl 1.80303 * 109.47057 * 270.25427 * 21 20 2 23 23 H 1.08996 * 109.47125 * 90.00088 * 1 2 3 24 24 H 1.09003 * 109.47248 * 210.00417 * 1 2 3 25 25 H 1.09004 * 109.46872 * 330.00197 * 1 2 3 26 26 H 1.08001 * 120.03580 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46520 * 90.00425 * 6 5 4 28 28 H 1.09000 * 109.46511 * 209.99554 * 6 5 4 29 29 H 1.08992 * 109.47369 * 330.00588 * 6 5 4 30 30 H 1.09006 * 109.46891 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.47514 * 300.00046 * 9 7 5 32 32 H 1.09001 * 109.46881 * 60.00469 * 9 7 5 33 33 H 0.97006 * 119.99388 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.03820 * 180.02562 * 18 4 3 35 35 H 1.08004 * 119.96386 * 179.97438 * 19 18 4 36 36 H 1.08996 * 109.46924 * 30.25604 * 21 20 2 37 37 H 1.08998 * 109.46953 * 150.25600 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5857 1.1957 -0.0005 5 7 4.2866 2.4039 -0.0011 6 6 3.5620 3.6708 -0.1283 7 6 5.7461 2.4042 0.1255 8 1 6.1112 1.3771 0.1237 9 6 6.1441 3.0848 1.4367 10 6 6.3505 3.1543 -1.0334 11 1 5.7115 3.5871 -1.7889 12 6 7.7195 3.2871 -1.1299 13 7 8.4977 2.7597 -0.2101 14 14 8.4689 4.2162 -2.5667 15 1 7.3866 4.7093 -3.4559 16 1 9.2528 5.3694 -2.0557 17 1 9.3631 3.3094 -3.3304 18 6 4.2765 -0.0098 -0.0005 19 6 3.5806 -1.2025 -0.0005 20 6 2.1975 -1.1979 -0.0056 21 6 1.4415 -2.5015 -0.0124 22 17 1.1328 -3.0260 1.6848 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6568 2.1319 0.0004 27 1 3.2937 4.0369 0.8627 28 1 4.1964 4.4037 -0.6268 29 1 2.6569 3.5145 -0.7151 30 1 7.2301 3.0854 1.5307 31 1 5.7790 4.1118 1.4385 32 1 5.7069 2.5422 2.2749 33 1 9.4609 2.8535 -0.2777 34 1 5.3564 -0.0140 -0.0005 35 1 4.1169 -2.1399 -0.0010 36 1 0.4915 -2.3679 -0.5299 37 1 2.0312 -3.2609 -0.5258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:21 Heat of formation + Delta-G solvation = 10.399837 kcal Electronic energy + Delta-G solvation = -18158.922284 eV Core-core repulsion = 15347.545645 eV Total energy + Delta-G solvation = -2811.376639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35451 -36.71304 -35.54210 -33.24889 -32.19696 -31.05622 -29.27004 -26.79097 -26.75764 -25.28650 -24.06495 -21.44686 -21.08382 -18.81914 -16.82898 -16.21452 -15.57606 -14.96304 -14.57742 -14.41425 -13.81906 -13.63695 -13.57775 -13.06279 -12.86419 -12.71929 -12.34876 -12.02451 -11.69054 -11.56049 -11.49679 -11.29665 -11.08547 -10.90564 -10.69904 -10.53191 -10.26702 -10.21749 -10.16409 -9.92873 -9.31568 -8.79074 -8.51541 -8.24487 -6.47495 -6.12833 -4.24688 1.74846 1.95468 2.83768 3.20087 3.28763 3.31934 4.06104 4.33832 4.39378 4.96402 4.98603 5.14125 5.29661 5.33755 5.48577 5.56858 5.73718 5.84920 5.91667 5.99701 6.10744 6.15494 6.34192 6.46188 6.47899 6.65926 6.82744 6.90519 6.94510 7.03197 7.10541 7.32317 7.47687 7.61524 7.81247 8.05398 8.25993 8.52261 8.82208 9.42503 10.88078 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.004502 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.416772 B = 6217.491731 C = 6496.902424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.017 4.017 3 C -0.222 4.222 4 C 0.251 3.749 5 N -0.602 5.602 6 C 0.097 3.903 7 C 0.262 3.738 8 H 0.054 0.946 9 C -0.149 4.149 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.206 4.206 19 C -0.045 4.045 20 C -0.201 4.201 21 C 0.031 3.969 22 Cl -0.203 7.203 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.116 0.884 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -5.956 0.227 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.018 4.018 3 C -0.245 4.245 4 C 0.142 3.858 5 N -0.306 5.306 6 C -0.047 4.047 7 C 0.162 3.838 8 H 0.071 0.929 9 C -0.207 4.207 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.229 4.229 19 C -0.064 4.064 20 C -0.203 4.203 21 C -0.032 4.032 22 Cl -0.177 7.177 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.282 -5.774 0.398 13.577 hybrid contribution 0.591 0.601 -0.676 1.081 sum -11.691 -5.173 -0.279 12.787 Atomic orbital electron populations 1.20845 0.92161 1.02645 1.01784 1.19283 0.94765 0.92096 0.95689 1.20406 0.92286 0.97423 1.14392 1.18061 0.90828 0.86955 0.89923 1.47318 1.07795 1.01759 1.73686 1.21474 0.96305 0.87286 0.99621 1.18968 0.73044 0.98000 0.93792 0.92883 1.22121 1.04221 0.98176 0.96223 1.21403 0.91652 1.35382 1.08092 0.92071 1.24900 0.96985 0.95514 0.96346 1.69884 1.04431 1.44681 1.33687 0.86441 0.79196 0.79564 0.82241 1.19795 1.20905 1.20860 1.20868 1.00553 0.90793 1.10653 1.20630 0.92776 0.97292 0.95719 1.18997 0.93584 0.92593 1.15171 1.23002 1.01641 0.96040 0.82471 1.98713 1.96863 1.92111 1.30019 0.91489 0.91526 0.91752 0.86560 0.94676 0.90450 0.93091 0.88938 0.95195 0.96936 0.92668 0.85102 0.86784 0.88997 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.18 36.01 0.33 -1.03 16 2 C -0.02 -0.26 5.88 -104.65 -0.62 -0.87 16 3 C -0.22 -3.76 8.81 -39.38 -0.35 -4.10 16 4 C 0.25 4.92 6.54 -83.79 -0.55 4.37 16 5 N -0.60 -12.62 2.89 -173.32 -0.50 -13.12 16 6 C 0.10 1.75 9.22 59.85 0.55 2.30 16 7 C 0.26 6.30 2.58 -69.08 -0.18 6.13 16 8 H 0.05 1.37 5.31 -51.93 -0.28 1.09 16 9 C -0.15 -3.49 9.04 37.16 0.34 -3.16 16 10 C -0.53 -13.68 7.96 -34.44 -0.27 -13.95 16 11 H 0.06 1.60 7.00 -52.49 -0.37 1.23 16 12 C 0.06 1.70 5.30 -17.81 -0.09 1.61 16 13 N -0.89 -24.08 11.32 55.43 0.63 -23.45 16 14 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 C -0.21 -3.96 9.31 -39.38 -0.37 -4.32 16 19 C -0.04 -0.73 9.69 -39.61 -0.38 -1.11 16 20 C -0.20 -2.96 5.26 -104.59 -0.55 -3.51 16 21 C 0.03 0.36 6.00 36.01 0.22 0.57 16 22 Cl -0.20 -2.63 28.88 -51.86 -1.50 -4.13 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.72 6.48 -51.93 -0.34 0.39 16 25 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.12 1.81 6.31 -52.49 -0.33 1.48 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.47 6.66 -51.93 -0.35 1.13 16 29 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.03 0.67 7.79 -51.93 -0.40 0.26 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.13 2.70 5.74 -52.49 -0.30 2.40 16 35 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.09 0.91 6.71 -51.93 -0.35 0.56 16 37 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -27.08 310.22 -8.67 -35.74 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.03 Total: 1.91 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.92 Total: -17.08 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.13 Total: -36.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.08 -8.67 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.143 kcal (2) G-P(sol) polarization free energy of solvation -27.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds