Wall clock time and date at job start Mon Mar 30 2020 07:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 C 1.50702 * 109.47498 * 239.99818 * 2 1 3 5 5 H 1.08002 * 120.00001 * 240.00118 * 4 2 1 6 6 C 1.37875 * 119.99743 * 60.00004 * 4 2 1 7 7 N 1.31512 * 120.00296 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47380 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46740 * 120.00063 * 8 6 4 11 11 H 1.48500 * 109.47316 * 239.99829 * 8 6 4 12 12 N 1.46904 * 109.46977 * 119.99882 * 2 1 3 13 13 C 1.46906 * 110.99716 * 275.00016 * 12 2 1 14 14 H 1.08996 * 109.46825 * 35.00670 * 13 12 2 15 15 C 1.52997 * 109.47302 * 274.99847 * 13 12 2 16 16 C 1.52999 * 109.46507 * 154.99875 * 13 12 2 17 17 C 1.50700 * 109.47526 * 294.99912 * 16 13 12 18 18 C 1.38266 * 119.99120 * 89.99961 * 17 16 13 19 19 C 1.38217 * 120.02414 * 180.02562 * 18 17 16 20 20 C 1.38228 * 120.01710 * 359.97438 * 19 18 17 21 21 C 1.38337 * 119.98561 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.01438 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99380 * 269.73120 * 17 16 13 24 24 H 1.08992 * 109.47608 * 300.00277 * 1 2 3 25 25 H 1.09010 * 109.47079 * 60.00411 * 1 2 3 26 26 H 1.09007 * 109.47335 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00611 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99849 * 151.05413 * 12 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 30 30 H 1.09001 * 109.46832 * 60.00356 * 15 13 12 31 31 H 1.09004 * 109.47261 * 300.00337 * 15 13 12 32 32 H 1.09001 * 109.47317 * 55.00601 * 16 13 12 33 33 H 1.09006 * 109.47194 * 175.00237 * 16 13 12 34 34 H 1.08004 * 119.98589 * 0.02678 * 18 17 16 35 35 H 1.08004 * 119.98846 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.01475 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00814 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1476 -2.2863 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 1 1.2574 0.9329 2.2907 15 6 3.4109 0.9810 2.3225 16 6 1.9768 -0.5796 3.6454 17 6 0.6188 -1.2280 3.7264 18 6 0.4240 -2.4921 3.2010 19 6 -0.8213 -3.0872 3.2745 20 6 -1.8726 -2.4192 3.8737 21 6 -1.6784 -1.1545 4.3995 22 17 -2.9984 -0.3146 5.1517 23 6 -0.4301 -0.5615 4.3307 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7096 1.1618 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 3.4577 1.6597 3.1741 30 1 3.4860 1.5525 1.3974 31 1 4.2358 0.2706 2.3787 32 1 2.7485 -1.3493 3.6607 33 1 2.1122 0.0875 4.4968 34 1 1.2453 -3.0146 2.7331 35 1 -0.9727 -4.0748 2.8642 36 1 -2.8458 -2.8841 3.9307 37 1 -0.2766 0.4239 4.7452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068611898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:06 Heat of formation + Delta-G solvation = 0.260138 kcal Electronic energy + Delta-G solvation = -18227.649636 eV Core-core repulsion = 15415.833307 eV Total energy + Delta-G solvation = -2811.816329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23821 -36.93042 -36.17799 -33.69841 -31.76922 -30.44460 -30.09557 -26.93722 -26.24194 -25.11825 -22.40624 -21.71047 -20.42736 -19.46998 -16.84614 -16.32613 -15.46550 -15.24426 -14.87963 -14.08476 -13.94855 -13.68558 -13.44789 -13.16471 -12.94915 -12.30467 -12.13725 -11.87817 -11.66793 -11.41876 -11.18673 -11.09429 -10.99478 -10.91357 -10.65600 -10.52262 -10.34973 -10.25406 -10.09721 -9.82868 -8.80821 -8.62590 -8.47075 -8.30501 -7.21789 -6.01855 -4.08042 1.48714 1.55046 2.29934 3.27977 3.36193 3.39585 3.92690 4.40131 4.92897 5.04007 5.19124 5.27609 5.30781 5.52104 5.60638 5.62406 5.71153 5.76908 5.89277 6.04736 6.09819 6.18223 6.31295 6.43202 6.51170 6.59884 6.66569 6.90819 6.94570 7.11481 7.20439 7.29091 7.55825 7.79240 7.93153 8.30155 8.41872 8.69722 9.03723 9.58005 11.04399 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.005040 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.485822 B = 5553.687842 C = 5962.426022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.679 5.679 13 C 0.087 3.913 14 H 0.072 0.928 15 C -0.178 4.178 16 C -0.070 4.070 17 C -0.041 4.041 18 C -0.078 4.078 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.035 4.035 22 Cl -0.088 7.088 23 C -0.116 4.116 24 H 0.002 0.998 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -3.772 14.224 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.309 5.309 13 C -0.025 4.025 14 H 0.090 0.910 15 C -0.237 4.237 16 C -0.108 4.108 17 C -0.042 4.042 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.062 4.062 22 Cl -0.059 7.059 23 C -0.134 4.134 24 H 0.021 0.979 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.377 -3.826 14.306 14.998 hybrid contribution 0.805 0.296 -1.211 1.484 sum -1.572 -3.530 13.095 13.653 Atomic orbital electron populations 1.21668 0.97929 0.99138 0.99062 1.19060 0.92406 0.92304 0.85537 0.98220 1.21292 1.31217 1.12387 0.90504 0.92300 1.24912 0.95090 0.94993 0.99008 1.69911 1.36746 1.22928 1.23269 0.86512 0.78596 0.79615 0.83075 1.19800 1.21041 1.21170 1.60815 1.31742 1.32484 1.05873 1.21482 0.96204 0.93407 0.91357 0.91021 1.22490 0.98672 1.00705 1.01787 1.20709 0.93120 0.99169 0.97806 1.19680 0.95267 0.93939 0.95267 1.21110 0.97375 0.94721 0.96372 1.21072 0.92743 1.00118 0.98874 1.20909 0.99776 0.93535 0.99946 1.20787 0.89038 0.94365 1.01989 1.98339 1.48223 1.78287 1.81053 1.20865 0.91100 1.00129 1.01344 0.97920 0.90417 0.95193 0.93046 0.85381 0.93318 0.92119 0.92941 0.90989 0.91576 0.85225 0.85615 0.85774 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.17 37.15 0.34 -2.65 16 2 C 0.21 5.26 2.41 -68.87 -0.17 5.09 16 3 H 0.00 0.00 7.11 -51.93 -0.37 -0.36 16 4 C -0.52 -13.81 8.59 -34.44 -0.30 -14.11 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -13.39 5.43 -100.95 -0.55 -13.94 16 13 C 0.09 1.44 2.39 -67.71 -0.16 1.28 16 14 H 0.07 1.34 7.11 -51.93 -0.37 0.97 16 15 C -0.18 -2.69 9.15 37.16 0.34 -2.35 16 16 C -0.07 -0.95 5.03 -27.88 -0.14 -1.10 16 17 C -0.04 -0.60 4.95 -104.63 -0.52 -1.12 16 18 C -0.08 -1.14 9.31 -39.58 -0.37 -1.50 16 19 C -0.11 -1.50 10.04 -39.59 -0.40 -1.89 16 20 C -0.12 -1.67 9.83 -39.55 -0.39 -2.06 16 21 C -0.04 -0.51 6.32 -39.49 -0.25 -0.76 16 22 Cl -0.09 -1.15 28.96 -51.86 -1.50 -2.65 16 23 C -0.12 -1.67 9.49 -39.55 -0.38 -2.05 16 24 H 0.00 0.04 7.43 -51.93 -0.39 -0.34 16 25 H 0.08 2.14 6.07 -51.92 -0.32 1.82 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.33 6.38 7.96 -39.29 -0.31 6.06 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.06 7.43 -51.93 -0.39 0.67 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -28.00 320.41 -9.56 -37.56 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.47 Total: 4.49 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.48 Total: -21.62 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.08 Total: -38.70 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.00 -9.56 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068611898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.818 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds