Wall clock time and date at job start Mon Mar 30 2020 07:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 C 1.50702 * 109.47498 * 239.99818 * 2 1 3 5 5 H 1.08002 * 120.00001 * 240.00118 * 4 2 1 6 6 C 1.37875 * 119.99743 * 60.00004 * 4 2 1 7 7 N 1.31512 * 120.00296 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47380 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46740 * 120.00063 * 8 6 4 11 11 H 1.48500 * 109.47316 * 239.99829 * 8 6 4 12 12 N 1.46904 * 109.46977 * 119.99882 * 2 1 3 13 13 C 1.46906 * 110.99716 * 275.00016 * 12 2 1 14 14 H 1.08996 * 109.46825 * 35.00670 * 13 12 2 15 15 C 1.52997 * 109.47302 * 274.99847 * 13 12 2 16 16 C 1.52999 * 109.46507 * 154.99875 * 13 12 2 17 17 C 1.50700 * 109.47526 * 294.99912 * 16 13 12 18 18 C 1.38266 * 119.99120 * 89.99961 * 17 16 13 19 19 C 1.38217 * 120.02414 * 180.02562 * 18 17 16 20 20 C 1.38228 * 120.01710 * 359.97438 * 19 18 17 21 21 C 1.38337 * 119.98561 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.01438 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99380 * 269.73120 * 17 16 13 24 24 H 1.08992 * 109.47608 * 300.00277 * 1 2 3 25 25 H 1.09010 * 109.47079 * 60.00411 * 1 2 3 26 26 H 1.09007 * 109.47335 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00611 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99849 * 151.05413 * 12 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 30 30 H 1.09001 * 109.46832 * 60.00356 * 15 13 12 31 31 H 1.09004 * 109.47261 * 300.00337 * 15 13 12 32 32 H 1.09001 * 109.47317 * 55.00601 * 16 13 12 33 33 H 1.09006 * 109.47194 * 175.00237 * 16 13 12 34 34 H 1.08004 * 119.98589 * 0.02678 * 18 17 16 35 35 H 1.08004 * 119.98846 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.01475 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00814 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1476 -2.2863 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 1 1.2574 0.9329 2.2907 15 6 3.4109 0.9810 2.3225 16 6 1.9768 -0.5796 3.6454 17 6 0.6188 -1.2280 3.7264 18 6 0.4240 -2.4921 3.2010 19 6 -0.8213 -3.0872 3.2745 20 6 -1.8726 -2.4192 3.8737 21 6 -1.6784 -1.1545 4.3995 22 17 -2.9984 -0.3146 5.1517 23 6 -0.4301 -0.5615 4.3307 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7096 1.1618 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 3.4577 1.6597 3.1741 30 1 3.4860 1.5525 1.3974 31 1 4.2358 0.2706 2.3787 32 1 2.7485 -1.3493 3.6607 33 1 2.1122 0.0875 4.4968 34 1 1.2453 -3.0146 2.7331 35 1 -0.9727 -4.0748 2.8642 36 1 -2.8458 -2.8841 3.9307 37 1 -0.2766 0.4239 4.7452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068611898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:05 Heat of formation + Delta-G solvation = -13.966482 kcal Electronic energy + Delta-G solvation = -18228.266549 eV Core-core repulsion = 15415.833307 eV Total energy + Delta-G solvation = -2812.433242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34272 -38.38632 -37.30914 -35.45247 -33.32169 -31.69220 -31.44783 -28.66030 -27.40135 -27.17940 -23.48384 -23.03051 -21.92794 -21.08039 -18.47434 -17.76349 -16.97386 -16.42255 -16.33700 -15.71478 -15.44887 -14.96697 -14.61560 -14.48063 -14.32709 -13.89224 -13.57705 -13.34429 -12.98791 -12.94353 -12.82571 -12.49568 -12.34993 -12.23576 -12.21410 -12.15674 -12.04225 -11.76112 -11.56112 -11.49394 -10.83570 -10.55578 -9.70903 -9.40976 -8.87855 -8.10386 -6.23572 0.39301 0.47316 1.23225 1.41445 1.43853 1.54816 2.43005 2.83424 3.18892 3.68086 3.89692 4.02499 4.18250 4.31001 4.45876 4.49207 4.55421 4.60915 4.72468 4.86766 4.91045 4.99816 5.03066 5.09325 5.12502 5.24176 5.33949 5.34991 5.41028 5.54232 5.57101 5.72120 5.82880 5.92428 6.05148 6.26556 6.56541 6.87006 7.11597 7.47293 8.95464 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.005040 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.485822 B = 5553.687842 C = 5962.426022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.223 3.777 3 H -0.033 1.033 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.671 5.671 13 C 0.087 3.913 14 H 0.047 0.953 15 C -0.170 4.170 16 C -0.060 4.060 17 C -0.054 4.054 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.048 4.048 22 Cl -0.081 7.081 23 C -0.126 4.126 24 H 0.010 0.990 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 -4.837 15.005 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 H -0.015 1.015 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.301 5.301 13 C -0.024 4.024 14 H 0.066 0.934 15 C -0.229 4.229 16 C -0.098 4.098 17 C -0.054 4.054 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.147 4.147 21 C -0.074 4.074 22 Cl -0.052 7.052 23 C -0.145 4.145 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.730 -4.898 15.111 15.979 hybrid contribution 0.567 0.648 -1.390 1.636 sum -1.163 -4.250 13.720 14.410 Atomic orbital electron populations 1.21446 0.98406 0.98230 0.98049 1.18774 0.91911 0.90739 0.87115 1.01527 1.21636 1.31083 1.12439 0.91532 0.92063 1.25716 0.95304 0.95667 1.02051 1.70046 1.37864 1.24298 1.23870 0.85495 0.78012 0.78689 0.79335 1.18778 1.20994 1.20904 1.60704 1.31969 1.32657 1.04810 1.21521 0.96199 0.93110 0.91527 0.93443 1.22393 0.98174 1.01040 1.01319 1.20638 0.93140 0.99491 0.96506 1.19840 0.95784 0.94195 0.95621 1.21282 0.97954 0.95034 0.96718 1.21359 0.92407 1.01006 0.98532 1.21180 1.00631 0.93406 0.99464 1.20979 0.89351 0.94833 1.02259 1.98337 1.47814 1.78180 1.80915 1.21048 0.91271 1.00601 1.01543 0.97110 0.93152 0.95785 0.93088 0.84985 0.90702 0.95175 0.91360 0.89609 0.89173 0.85094 0.83639 0.84086 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.23 9.17 71.98 0.66 -4.57 16 2 C 0.22 11.10 2.41 44.17 0.11 11.20 16 3 H -0.03 -1.83 7.11 -2.39 -0.02 -1.84 16 4 C -0.53 -28.37 8.59 25.60 0.22 -28.15 16 5 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 8 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.67 -26.13 5.43 -473.31 -2.57 -28.70 16 13 C 0.09 2.81 2.39 44.91 0.11 2.91 16 14 H 0.05 1.77 7.11 -2.39 -0.02 1.75 16 15 C -0.17 -4.93 9.15 71.98 0.66 -4.27 16 16 C -0.06 -1.50 5.03 29.85 0.15 -1.35 16 17 C -0.05 -1.50 4.95 -19.87 -0.10 -1.60 16 18 C -0.09 -2.55 9.31 22.27 0.21 -2.35 16 19 C -0.11 -2.95 10.04 22.26 0.22 -2.73 16 20 C -0.13 -3.30 9.83 22.29 0.22 -3.08 16 21 C -0.05 -1.31 6.32 22.33 0.14 -1.17 16 22 Cl -0.08 -2.03 28.96 -2.72 -0.08 -2.11 16 23 C -0.13 -3.48 9.49 22.29 0.21 -3.27 16 24 H 0.01 0.48 7.43 -2.39 -0.02 0.46 16 25 H 0.05 2.83 6.07 -2.38 -0.01 2.82 16 26 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.33 12.56 7.96 -89.69 -0.71 11.85 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.04 7.43 -2.39 -0.02 1.02 16 31 H 0.07 1.75 8.13 -2.38 -0.02 1.73 16 32 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.09 1.85 8.08 -2.38 -0.02 1.83 16 34 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -59.78 320.41 3.21 -56.57 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.34 Total: 19.51 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.26 Total: -37.35 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.33 Total: -81.89 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -59.78 3.21 -56.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068611898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.602 kcal (2) G-P(sol) polarization free energy of solvation -59.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds