Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50710 * 119.99587 * 2 1 4 4 N 1.46503 * 109.46897 * 124.99903 * 3 2 1 5 5 C 1.36757 * 127.13935 * 90.00070 * 4 3 2 6 6 C 1.50697 * 126.34405 * 0.02755 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.71483 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.30302 * 107.31664 * 179.76514 * 5 4 3 10 10 N 1.28526 * 110.07912 * 0.22909 * 9 5 4 11 11 C 1.31289 * 109.85218 * 359.97438 * 10 9 5 12 12 S 1.76200 * 126.48201 * 179.97438 * 11 10 9 13 13 C 1.81004 * 99.99950 * 359.97438 * 12 11 10 14 14 C 1.50703 * 109.47116 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99835 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00162 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47360 * 90.00083 * 18 16 14 20 20 H 1.48504 * 109.46977 * 210.00128 * 18 16 14 21 21 H 1.48498 * 109.47192 * 329.99812 * 18 16 14 22 22 H 1.08002 * 119.99632 * 180.02562 * 1 2 3 23 23 H 1.07998 * 120.00793 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00793 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.46847 * 5.00196 * 3 2 1 26 26 H 1.09001 * 109.46726 * 244.99687 * 3 2 1 27 27 H 1.09002 * 109.47120 * 149.71236 * 6 5 4 28 28 H 1.08998 * 109.46862 * 29.72038 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 34 34 H 1.09000 * 109.47168 * 299.99818 * 13 12 11 35 35 H 1.08996 * 109.47058 * 59.99806 * 13 12 11 36 36 H 0.96999 * 119.99930 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 4.2913 0.9007 1.1439 6 6 5.0445 0.3017 -0.0158 7 6 4.8641 -1.2175 -0.0111 8 6 5.6293 -1.8256 -1.1882 9 7 4.7578 1.1088 2.3426 10 7 3.8491 1.6337 3.0847 11 6 2.7443 1.7908 2.3930 12 16 1.2281 2.4695 2.9804 13 6 1.6887 2.8325 4.6928 14 6 0.5111 3.4382 5.4122 15 1 -0.4216 3.5896 4.8891 16 6 0.6248 3.8000 6.7378 17 7 -0.4028 4.3290 7.3654 18 14 2.2381 3.5388 7.6422 19 1 3.0885 4.7475 7.4969 20 1 1.9650 3.2958 9.0816 21 1 2.9435 2.3652 7.0674 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9352 0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3584 2.1317 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 6.1037 0.5422 0.0757 28 1 4.6586 0.7106 -0.9497 29 1 3.8049 -1.4580 -0.1027 30 1 5.2500 -1.6263 0.9228 31 1 6.6884 -1.5852 -1.0962 32 1 5.5004 -2.9080 -1.1850 33 1 5.2438 -1.4169 -2.1223 34 1 1.9842 1.9101 5.1928 35 1 2.5221 3.5348 4.7038 36 1 -0.3227 4.5839 8.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = 77.432477 kcal Electronic energy + Delta-G solvation = -17744.889486 eV Core-core repulsion = 14970.756058 eV Total energy + Delta-G solvation = -2774.133428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.58235 -36.33582 -35.30235 -33.10563 -32.69551 -30.76198 -29.41156 -27.29597 -26.62114 -22.91966 -22.26966 -22.06114 -21.04127 -19.77023 -17.72389 -16.82877 -16.23915 -16.03204 -15.34230 -15.07689 -14.60023 -14.19518 -13.88596 -13.60113 -13.39750 -12.75935 -12.69661 -12.47329 -12.38396 -11.99279 -11.76662 -11.52864 -11.27858 -11.00131 -10.84132 -10.77670 -10.32836 -10.12131 -10.05331 -9.79712 -9.75133 -9.42911 -9.30786 -8.71901 -6.98234 -6.22208 -4.27115 1.64221 1.87728 2.00678 2.93829 3.12774 3.21076 3.30673 3.38611 3.45735 4.28898 4.34288 4.47162 4.59813 4.63690 4.76749 4.85242 5.07829 5.11438 5.14907 5.26913 5.42382 5.51791 5.58030 5.64955 5.75491 5.82194 6.01299 6.08002 6.22776 6.31994 6.42150 6.68789 6.72727 6.95839 7.35046 8.20386 8.73707 8.99560 9.33560 10.88812 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.005061 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.499412 B = 5531.499182 C = 6354.829587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.189 4.189 3 C 0.138 3.862 4 N -0.465 5.465 5 C 0.165 3.835 6 C -0.025 4.025 7 C -0.120 4.120 8 C -0.150 4.150 9 N -0.288 5.288 10 N -0.300 5.300 11 C 0.174 3.826 12 S -0.019 6.019 13 C 0.035 3.965 14 C -0.526 4.526 15 H 0.084 0.916 16 C 0.087 3.913 17 N -0.888 5.888 18 Si 0.874 3.126 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.258 1.258 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -9.932 -19.541 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.208 4.208 3 C 0.015 3.985 4 N -0.160 5.160 5 C -0.105 4.105 6 C -0.065 4.065 7 C -0.159 4.159 8 C -0.207 4.207 9 N -0.127 5.127 10 N -0.143 5.143 11 C -0.200 4.200 12 S 0.210 5.790 13 C -0.114 4.114 14 C -0.565 4.565 15 H 0.102 0.898 16 C -0.118 4.118 17 N -0.525 5.525 18 Si 0.700 3.300 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.182 1.182 22 H 0.124 0.876 23 H 0.124 0.876 24 H 0.132 0.868 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.293 -9.623 -18.747 21.992 hybrid contribution 0.985 -0.293 0.182 1.043 sum 7.277 -9.916 -18.566 22.270 Atomic orbital electron populations 1.24011 0.95494 1.02875 0.96132 1.23024 0.96437 0.97614 1.03703 1.20944 0.92025 0.97962 0.87564 1.46442 1.11288 1.48045 1.10189 1.24884 0.83401 1.04096 0.98146 1.19996 0.99803 0.95023 0.91689 1.21549 1.00938 0.93602 0.99826 1.21756 1.00504 1.00739 0.97743 1.73897 1.23808 1.15076 0.99934 1.74769 0.96682 1.18325 1.24523 1.27488 1.03606 1.04138 0.84725 1.85456 1.03244 1.73408 1.16842 1.21667 1.01155 1.01119 0.87454 1.20372 0.97223 1.42810 0.96091 0.89839 1.24762 0.96768 0.93676 0.96621 1.69853 1.30287 1.40910 1.11466 0.86836 0.83866 0.80117 0.79220 1.19660 1.20776 1.18165 0.87601 0.87640 0.86794 0.87915 0.88112 0.88535 0.90335 0.91972 0.91062 0.92340 0.92438 0.92649 0.93000 0.93482 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 14.32 29.02 0.42 -0.96 16 2 C -0.19 -1.90 9.85 -36.02 -0.35 -2.26 16 3 C 0.14 1.51 6.32 -5.19 -0.03 1.47 16 4 N -0.46 -7.22 2.79 -114.81 -0.32 -7.54 16 5 C 0.16 2.54 7.32 -153.99 -1.13 1.41 16 6 C -0.03 -0.25 5.59 -27.89 -0.16 -0.41 16 7 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 8 C -0.15 -0.98 9.91 37.16 0.37 -0.62 16 9 N -0.29 -5.71 12.18 32.99 0.40 -5.31 16 10 N -0.30 -6.70 11.60 30.68 0.36 -6.34 16 11 C 0.17 3.46 8.07 -88.34 -0.71 2.75 16 12 S -0.02 -0.39 21.73 -107.50 -2.34 -2.72 16 13 C 0.03 0.86 4.06 36.01 0.15 1.01 16 14 C -0.53 -14.79 9.68 -34.44 -0.33 -15.13 16 15 H 0.08 2.49 7.95 -52.48 -0.42 2.08 16 16 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16 17 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 18 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 23 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 24 H 0.11 1.10 6.65 -52.49 -0.35 0.76 16 25 H 0.10 1.12 7.51 -51.93 -0.39 0.73 16 26 H 0.10 0.80 7.25 -51.93 -0.38 0.42 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.60 7.26 -51.93 -0.38 0.22 16 29 H 0.06 0.55 6.73 -51.93 -0.35 0.21 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 1.34 7.20 -51.92 -0.37 0.97 16 35 H 0.05 1.20 7.57 -51.92 -0.39 0.80 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -33.08 320.03 -8.16 -41.23 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.14 Total: -3.82 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.04 Total: -11.55 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 1.21 Total: -45.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.34 Total: -2.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.08 -8.16 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.663 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds