Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50710 * 119.99587 * 2 1 4 4 N 1.46503 * 109.46897 * 124.99903 * 3 2 1 5 5 C 1.36757 * 127.13935 * 90.00070 * 4 3 2 6 6 C 1.50697 * 126.34405 * 0.02755 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.71483 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.30302 * 107.31664 * 179.76514 * 5 4 3 10 10 N 1.28526 * 110.07912 * 0.22909 * 9 5 4 11 11 C 1.31289 * 109.85218 * 359.97438 * 10 9 5 12 12 S 1.76200 * 126.48201 * 179.97438 * 11 10 9 13 13 C 1.81004 * 99.99950 * 359.97438 * 12 11 10 14 14 C 1.50703 * 109.47116 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99835 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00162 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47360 * 90.00083 * 18 16 14 20 20 H 1.48504 * 109.46977 * 210.00128 * 18 16 14 21 21 H 1.48498 * 109.47192 * 329.99812 * 18 16 14 22 22 H 1.08002 * 119.99632 * 180.02562 * 1 2 3 23 23 H 1.07998 * 120.00793 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00793 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.46847 * 5.00196 * 3 2 1 26 26 H 1.09001 * 109.46726 * 244.99687 * 3 2 1 27 27 H 1.09002 * 109.47120 * 149.71236 * 6 5 4 28 28 H 1.08998 * 109.46862 * 29.72038 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 34 34 H 1.09000 * 109.47168 * 299.99818 * 13 12 11 35 35 H 1.08996 * 109.47058 * 59.99806 * 13 12 11 36 36 H 0.96999 * 119.99930 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 4.2913 0.9007 1.1439 6 6 5.0445 0.3017 -0.0158 7 6 4.8641 -1.2175 -0.0111 8 6 5.6293 -1.8256 -1.1882 9 7 4.7578 1.1088 2.3426 10 7 3.8491 1.6337 3.0847 11 6 2.7443 1.7908 2.3930 12 16 1.2281 2.4695 2.9804 13 6 1.6887 2.8325 4.6928 14 6 0.5111 3.4382 5.4122 15 1 -0.4216 3.5896 4.8891 16 6 0.6248 3.8000 6.7378 17 7 -0.4028 4.3290 7.3654 18 14 2.2381 3.5388 7.6422 19 1 3.0885 4.7475 7.4969 20 1 1.9650 3.2958 9.0816 21 1 2.9435 2.3652 7.0674 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9352 0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3584 2.1317 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 6.1037 0.5422 0.0757 28 1 4.6586 0.7106 -0.9497 29 1 3.8049 -1.4580 -0.1027 30 1 5.2500 -1.6263 0.9228 31 1 6.6884 -1.5852 -1.0962 32 1 5.5004 -2.9080 -1.1850 33 1 5.2438 -1.4169 -2.1223 34 1 1.9842 1.9101 5.1928 35 1 2.5221 3.5348 4.7038 36 1 -0.3227 4.5839 8.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = 58.509707 kcal Electronic energy + Delta-G solvation = -17745.710039 eV Core-core repulsion = 14970.756058 eV Total energy + Delta-G solvation = -2774.953981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.94148 -37.35718 -36.09064 -35.28079 -33.73334 -32.02302 -31.42859 -28.29043 -27.56399 -24.84870 -23.69595 -23.02993 -22.01989 -20.68621 -19.35148 -18.67841 -17.50635 -17.27364 -16.46278 -16.23259 -15.89959 -15.47979 -15.32523 -14.83099 -14.69334 -14.46178 -14.10672 -13.58500 -13.12326 -12.99799 -12.78245 -12.62881 -12.60619 -12.50783 -12.24917 -12.17366 -11.87414 -11.71909 -11.57062 -11.27569 -11.13849 -10.96179 -10.77455 -10.54372 -8.60872 -8.43875 -6.53600 0.16843 0.58803 1.04397 1.27933 1.31849 1.40533 1.47599 1.70758 1.89972 2.25813 2.90175 3.31263 3.56926 3.78253 3.86318 4.04745 4.07999 4.22217 4.36258 4.49697 4.61041 4.63721 4.66319 4.73577 4.86187 4.88359 4.92806 4.97986 5.20013 5.22785 5.28800 5.43970 5.58493 5.62324 5.82478 5.97266 6.48659 7.10925 7.58523 8.70594 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.005061 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.499412 B = 5531.499182 C = 6354.829587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.199 4.199 3 C 0.127 3.873 4 N -0.455 5.455 5 C 0.191 3.809 6 C -0.025 4.025 7 C -0.116 4.116 8 C -0.144 4.144 9 N -0.334 5.334 10 N -0.343 5.343 11 C 0.153 3.847 12 S 0.013 5.987 13 C 0.032 3.968 14 C -0.532 4.532 15 H 0.056 0.944 16 C 0.039 3.961 17 N -0.927 5.927 18 Si 0.935 3.065 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.261 1.261 22 H 0.120 0.880 23 H 0.106 0.894 24 H 0.120 0.880 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -11.023 -22.022 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.218 4.218 3 C 0.006 3.994 4 N -0.149 5.149 5 C -0.079 4.079 6 C -0.065 4.065 7 C -0.155 4.155 8 C -0.201 4.201 9 N -0.173 5.173 10 N -0.186 5.186 11 C -0.223 4.223 12 S 0.242 5.758 13 C -0.117 4.117 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.163 4.163 17 N -0.565 5.565 18 Si 0.758 3.242 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.185 1.185 22 H 0.138 0.862 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.383 -10.719 -21.256 24.925 hybrid contribution 0.613 -0.020 0.767 0.982 sum 7.996 -10.739 -20.490 24.476 Atomic orbital electron populations 1.24216 0.95488 1.03679 0.94820 1.23022 0.96639 0.97317 1.04797 1.21408 0.92073 0.98553 0.87323 1.46719 1.11917 1.46543 1.09678 1.25876 0.83120 1.00840 0.98109 1.20359 0.99719 0.95575 0.90817 1.21503 1.01395 0.92587 0.99974 1.21715 1.00370 1.00896 0.97166 1.73809 1.24293 1.17333 1.01857 1.74648 0.97877 1.19543 1.26555 1.27207 1.02791 1.05639 0.86662 1.85034 1.03601 1.74086 1.13079 1.21347 0.99540 0.99985 0.90812 1.20524 0.97232 1.42799 0.96542 0.92580 1.25558 0.99898 0.93336 0.97533 1.69952 1.32268 1.42072 1.12187 0.85879 0.79870 0.80041 0.78418 1.18795 1.19428 1.18486 0.86228 0.87557 0.86200 0.88000 0.84221 0.87699 0.86745 0.91774 0.93330 0.91998 0.92045 0.90931 0.94187 0.94260 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 14.32 67.79 0.97 -1.38 16 2 C -0.20 -3.46 9.85 25.66 0.25 -3.21 16 3 C 0.13 2.40 6.32 85.64 0.54 2.94 16 4 N -0.45 -13.29 2.79 -517.16 -1.45 -14.74 16 5 C 0.19 5.54 7.32 137.63 1.01 6.54 16 6 C -0.03 -0.42 5.59 29.85 0.17 -0.25 16 7 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 8 C -0.14 -1.38 9.91 71.98 0.71 -0.66 16 9 N -0.33 -13.17 12.18 -49.53 -0.60 -13.77 16 10 N -0.34 -15.45 11.60 -56.85 -0.66 -16.11 16 11 C 0.15 6.03 8.07 179.55 1.45 7.48 16 12 S 0.01 0.55 21.73 -56.49 -1.23 -0.68 16 13 C 0.03 1.65 4.06 71.24 0.29 1.94 16 14 C -0.53 -30.73 9.68 25.60 0.25 -30.48 16 15 H 0.06 3.47 7.95 -2.91 -0.02 3.45 16 16 C 0.04 2.27 5.47 84.65 0.46 2.73 16 17 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 18 Si 0.93 45.44 27.47 68.60 1.88 47.32 16 19 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.26 -12.72 6.54 99.48 0.65 -12.06 16 22 H 0.12 1.61 8.06 -2.91 -0.02 1.58 16 23 H 0.11 1.70 7.84 -2.91 -0.02 1.68 16 24 H 0.12 1.96 6.65 -2.91 -0.02 1.94 16 25 H 0.10 1.98 7.51 -2.39 -0.02 1.96 16 26 H 0.14 1.55 7.25 -2.39 -0.02 1.53 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 1.15 7.26 -2.39 -0.02 1.13 16 29 H 0.06 0.94 6.73 -2.39 -0.02 0.93 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.04 2.11 7.20 -2.40 -0.02 2.09 16 35 H 0.04 2.04 7.57 -2.40 -0.02 2.02 16 36 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.81 320.03 5.53 -68.28 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.00 Total: 1.73 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 6.28 Total: -15.92 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -2.41 Total: -100.75 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -1.23 Total: -0.68 kcal Total: -73.81 5.53 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.789 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds