Wall clock time and date at job start Mon Mar 30 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.76193 * 100.00049 * 180.02562 * 10 9 7 12 12 N 1.31281 * 126.48767 * 0.02562 * 11 10 9 13 13 N 1.28517 * 109.86239 * 180.02562 * 12 11 10 14 14 C 1.30296 * 110.07965 * 359.97438 * 13 12 11 15 15 N 1.36542 * 126.48533 * 179.71764 * 11 10 9 16 16 C 1.46497 * 127.13983 * 359.97438 * 15 11 10 17 17 C 1.53006 * 109.46947 * 240.00310 * 16 15 11 18 18 C 1.53005 * 109.47097 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47191 * 59.99781 * 18 17 16 20 20 C 1.53002 * 109.47129 * 300.00433 * 19 18 17 21 21 C 1.52991 * 109.47140 * 120.00574 * 16 15 11 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.07999 * 126.34339 * 180.02562 * 14 13 12 26 26 H 1.08997 * 109.47444 * 0.02562 * 16 15 11 27 27 H 1.09004 * 109.47142 * 299.99818 * 17 16 15 28 28 H 1.08999 * 109.46956 * 60.00245 * 17 16 15 29 29 H 1.09004 * 109.46784 * 299.99803 * 18 17 16 30 30 H 1.08995 * 109.47013 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.46837 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.47040 * 59.99940 * 19 18 17 33 33 H 1.09004 * 109.46952 * 300.00043 * 20 19 18 34 34 H 1.09004 * 109.46942 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47340 * 299.99827 * 21 16 15 36 36 H 1.09004 * 109.47468 * 59.99865 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4271 -3.8750 0.0005 11 6 1.3070 -5.2351 -0.0002 12 7 -0.0040 -5.1667 -0.0011 13 7 -0.5031 -6.3510 -0.0009 14 6 0.4510 -7.2384 -0.0005 15 7 1.6382 -6.5597 -0.0059 16 6 2.9858 -7.1344 -0.0131 17 6 3.1670 -7.9937 -1.2660 18 6 4.5742 -8.5945 -1.2732 19 6 4.7646 -9.4623 -0.0276 20 6 4.5832 -8.6030 1.2253 21 6 3.1767 -8.0021 1.2324 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 0.3271 -8.3113 -0.0006 26 1 3.7232 -6.3317 -0.0128 27 1 2.4296 -8.7965 -1.2658 28 1 3.0310 -7.3755 -2.1533 29 1 5.3118 -7.7919 -1.2732 30 1 4.7035 -9.2062 -2.1659 31 1 5.7669 -9.8906 -0.0330 32 1 4.0269 -10.2647 -0.0276 33 1 5.3209 -7.8005 1.2253 34 1 4.7194 -9.2212 2.1127 35 1 3.0476 -7.3900 2.1250 36 1 2.4393 -8.8049 1.2326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:38 Heat of formation + Delta-G solvation = 47.818044 kcal Electronic energy + Delta-G solvation = -17910.404651 eV Core-core repulsion = 15134.987045 eV Total energy + Delta-G solvation = -2775.417606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.46335 -38.81277 -34.19168 -33.17178 -31.16257 -30.27204 -29.54941 -28.53558 -23.97382 -23.09071 -22.99184 -22.18314 -21.45184 -19.75963 -17.86202 -16.47224 -15.91173 -15.66037 -15.17281 -15.00038 -14.60006 -14.50296 -14.36020 -13.36146 -13.02254 -13.00240 -12.58985 -12.39175 -12.32968 -11.83083 -11.53824 -11.27792 -10.92964 -10.89406 -10.82845 -10.79392 -10.73375 -10.46125 -10.01896 -9.81213 -9.67164 -9.50101 -9.21531 -8.59834 -6.87293 -6.18461 -4.27117 1.87715 2.08160 2.87903 3.27242 3.31065 3.31305 3.32207 3.47913 4.22159 4.33657 4.35717 4.51793 4.66514 4.81092 4.83336 5.01505 5.07184 5.09811 5.17567 5.26430 5.40051 5.51303 5.65961 5.68202 5.72261 5.75167 5.84954 5.93877 5.98465 6.11184 6.40980 7.09191 7.13884 7.24799 7.68516 7.94258 8.73334 9.11929 9.36258 10.91842 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004603 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.052098 B = 6081.265705 C = 6732.220219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.081 3.919 10 S -0.063 6.063 11 C 0.180 3.820 12 N -0.293 5.293 13 N -0.293 5.293 14 C 0.137 3.863 15 N -0.469 5.469 16 C 0.139 3.861 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.127 4.127 22 H 0.268 0.732 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.210 0.790 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 -19.034 -0.042 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.084 0.916 9 C -0.066 4.066 10 S 0.166 5.834 11 C -0.194 4.194 12 N -0.137 5.137 13 N -0.132 5.132 14 C -0.154 4.154 15 N -0.164 5.164 16 C 0.036 3.964 17 C -0.165 4.165 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.165 4.165 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.226 0.774 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.930 -18.313 -0.046 20.832 hybrid contribution 0.211 0.150 -0.002 0.259 sum 10.141 -18.162 -0.048 20.802 Atomic orbital electron populations 1.69977 1.06106 1.27606 1.48057 1.24937 0.94954 0.99141 0.94386 0.86408 0.79406 0.81871 0.78906 1.19872 1.20930 1.19863 1.20548 0.93203 0.88648 1.54380 0.91558 1.21315 0.93712 0.89068 1.02519 1.85356 1.11662 0.94814 1.91593 1.27494 0.97685 0.88921 1.05318 1.74833 1.03474 1.14622 1.20780 1.73933 1.26544 0.95688 1.17026 1.26322 0.80993 1.00622 1.07414 1.46812 1.08073 1.05249 1.56290 1.21527 0.80998 0.97234 0.96672 1.21906 0.98367 0.99270 0.96947 1.21506 0.95956 0.99606 0.98342 1.21593 1.01911 0.98123 0.94360 1.21497 0.95970 0.99639 0.98303 1.21895 0.98363 0.99219 0.97028 0.92214 0.92922 0.92935 0.77366 0.87414 0.91102 0.90817 0.91254 0.91166 0.91546 0.91804 0.91258 0.91162 0.90816 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.64 9.13 -34.44 -0.31 -14.95 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.08 2.16 4.99 36.01 0.18 2.34 16 10 S -0.06 -1.35 21.37 -107.50 -2.30 -3.64 16 11 C 0.18 3.71 8.07 -88.34 -0.71 2.99 16 12 N -0.29 -6.85 11.60 30.68 0.36 -6.49 16 13 N -0.29 -6.00 12.17 29.90 0.36 -5.64 16 14 C 0.14 2.11 11.91 -88.95 -1.06 1.05 16 15 N -0.47 -7.41 2.66 -111.06 -0.29 -7.71 16 16 C 0.14 1.61 2.87 -67.93 -0.20 1.41 16 17 C -0.13 -1.18 5.28 -26.73 -0.14 -1.32 16 18 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 19 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 20 C -0.12 -0.83 5.92 -26.75 -0.16 -0.99 16 21 C -0.13 -1.18 5.27 -26.76 -0.14 -1.32 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.05 1.52 8.14 -51.92 -0.42 1.09 16 24 H 0.05 1.51 8.14 -51.91 -0.42 1.09 16 25 H 0.21 2.15 8.06 -52.49 -0.42 1.73 16 26 H 0.11 1.35 7.33 -51.93 -0.38 0.97 16 27 H 0.07 0.60 7.99 -51.93 -0.41 0.18 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.59 7.98 -51.93 -0.41 0.18 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -32.17 311.49 -9.82 -41.99 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.40 Total: -3.17 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.96 Total: -10.79 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 1.16 Total: -45.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.30 Total: -3.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.17 -9.82 -41.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.806 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds