Wall clock time and date at job start Mon Mar 30 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.76193 * 100.00049 * 180.02562 * 10 9 7 12 12 N 1.31281 * 126.48767 * 0.02562 * 11 10 9 13 13 N 1.28517 * 109.86239 * 180.02562 * 12 11 10 14 14 C 1.30296 * 110.07965 * 359.97438 * 13 12 11 15 15 N 1.36542 * 126.48533 * 179.71764 * 11 10 9 16 16 C 1.46497 * 127.13983 * 359.97438 * 15 11 10 17 17 C 1.53006 * 109.46947 * 240.00310 * 16 15 11 18 18 C 1.53005 * 109.47097 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47191 * 59.99781 * 18 17 16 20 20 C 1.53002 * 109.47129 * 300.00433 * 19 18 17 21 21 C 1.52991 * 109.47140 * 120.00574 * 16 15 11 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.07999 * 126.34339 * 180.02562 * 14 13 12 26 26 H 1.08997 * 109.47444 * 0.02562 * 16 15 11 27 27 H 1.09004 * 109.47142 * 299.99818 * 17 16 15 28 28 H 1.08999 * 109.46956 * 60.00245 * 17 16 15 29 29 H 1.09004 * 109.46784 * 299.99803 * 18 17 16 30 30 H 1.08995 * 109.47013 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.46837 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.47040 * 59.99940 * 19 18 17 33 33 H 1.09004 * 109.46952 * 300.00043 * 20 19 18 34 34 H 1.09004 * 109.46942 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47340 * 299.99827 * 21 16 15 36 36 H 1.09004 * 109.47468 * 59.99865 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4271 -3.8750 0.0005 11 6 1.3070 -5.2351 -0.0002 12 7 -0.0040 -5.1667 -0.0011 13 7 -0.5031 -6.3510 -0.0009 14 6 0.4510 -7.2384 -0.0005 15 7 1.6382 -6.5597 -0.0059 16 6 2.9858 -7.1344 -0.0131 17 6 3.1670 -7.9937 -1.2660 18 6 4.5742 -8.5945 -1.2732 19 6 4.7646 -9.4623 -0.0276 20 6 4.5832 -8.6030 1.2253 21 6 3.1767 -8.0021 1.2324 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 0.3271 -8.3113 -0.0006 26 1 3.7232 -6.3317 -0.0128 27 1 2.4296 -8.7965 -1.2658 28 1 3.0310 -7.3755 -2.1533 29 1 5.3118 -7.7919 -1.2732 30 1 4.7035 -9.2062 -2.1659 31 1 5.7669 -9.8906 -0.0330 32 1 4.0269 -10.2647 -0.0276 33 1 5.3209 -7.8005 1.2253 34 1 4.7194 -9.2212 2.1127 35 1 3.0476 -7.3900 2.1250 36 1 2.4393 -8.8049 1.2326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:38 Heat of formation + Delta-G solvation = 30.467281 kcal Electronic energy + Delta-G solvation = -17911.157036 eV Core-core repulsion = 15134.987045 eV Total energy + Delta-G solvation = -2776.169992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.90789 -39.61512 -35.41773 -35.21980 -31.81489 -31.81140 -30.71537 -30.45298 -25.55670 -24.68443 -23.67576 -23.64692 -22.56388 -20.52951 -19.24978 -18.42033 -17.37861 -17.07081 -16.68060 -16.12856 -15.98326 -15.21057 -15.08639 -14.87919 -14.52325 -14.37867 -14.09828 -13.81437 -13.25348 -13.00761 -12.71579 -12.68298 -12.38214 -12.32643 -12.16622 -11.70641 -11.69621 -11.67139 -11.49791 -11.34672 -11.20491 -11.11349 -10.78618 -10.70217 -8.61190 -8.32574 -6.51245 0.24409 0.66653 1.40626 1.43105 1.46397 1.55543 1.69994 1.79674 2.37098 3.01714 3.35837 3.61426 3.63455 3.87289 4.01351 4.18553 4.18735 4.25976 4.42981 4.46482 4.50284 4.62615 4.79328 4.88006 4.90542 5.00815 5.00853 5.09602 5.16039 5.19455 5.31853 5.32698 5.51020 5.51911 5.78294 5.87484 6.57559 7.18523 7.61781 8.79525 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004603 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.052098 B = 6081.265705 C = 6732.220219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.082 3.918 10 S -0.017 6.017 11 C 0.154 3.846 12 N -0.344 5.344 13 N -0.340 5.340 14 C 0.173 3.827 15 N -0.457 5.457 16 C 0.130 3.870 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.121 4.121 22 H 0.271 0.729 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.267 0.733 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.616 -21.193 -0.045 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.094 0.906 9 C -0.066 4.066 10 S 0.212 5.788 11 C -0.222 4.222 12 N -0.188 5.188 13 N -0.178 5.178 14 C -0.118 4.118 15 N -0.150 5.150 16 C 0.028 3.972 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.160 4.160 22 H 0.080 0.920 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.283 0.717 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.235 -20.508 -0.050 23.881 hybrid contribution -0.502 0.606 -0.001 0.787 sum 11.733 -19.903 -0.051 23.104 Atomic orbital electron populations 1.70130 1.08167 1.28837 1.48970 1.26033 0.95804 1.03429 0.93359 0.85226 0.78074 0.76446 0.79671 1.18559 1.20453 1.18544 1.20940 0.93748 0.89434 1.54461 0.90564 1.20865 0.94513 0.92222 0.99034 1.84749 1.09076 0.92754 1.92230 1.27264 0.97134 0.90677 1.07123 1.74730 1.05089 1.16797 1.22144 1.73829 1.28441 0.95619 1.19939 1.27341 0.79646 1.02181 1.02633 1.47116 1.09955 1.03417 1.54550 1.21969 0.78288 0.97487 0.99422 1.21916 1.00504 0.98965 0.94572 1.21516 0.94101 0.99749 0.99709 1.21584 1.03156 0.97857 0.92912 1.21507 0.94121 0.99782 0.99667 1.21904 1.00494 0.98909 0.94661 0.91975 0.96543 0.96559 0.71704 0.88828 0.89324 0.92646 0.91804 0.89701 0.90174 0.90641 0.91808 0.89688 0.92622 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.61 13.29 21.45 0.28 -56.32 16 2 C 0.02 0.88 5.46 84.66 0.46 1.35 16 3 Si 0.98 43.36 29.54 68.60 2.03 45.39 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -31.23 9.13 25.60 0.23 -31.00 16 8 H 0.08 4.10 7.71 -2.91 -0.02 4.08 16 9 C 0.08 4.64 4.99 71.24 0.36 5.00 16 10 S -0.02 -0.74 21.37 -56.49 -1.21 -1.95 16 11 C 0.15 6.52 8.07 179.55 1.45 7.97 16 12 N -0.34 -16.72 11.60 -56.86 -0.66 -17.38 16 13 N -0.34 -14.02 12.17 -59.32 -0.72 -14.74 16 14 C 0.17 4.99 11.91 179.77 2.14 7.13 16 15 N -0.46 -13.97 2.66 -505.29 -1.34 -15.31 16 16 C 0.13 2.77 2.87 44.99 0.13 2.90 16 17 C -0.12 -1.93 5.28 30.60 0.16 -1.77 16 18 C -0.11 -1.26 5.92 30.60 0.18 -1.07 16 19 C -0.12 -1.00 5.92 30.60 0.18 -0.82 16 20 C -0.11 -1.25 5.92 30.58 0.18 -1.07 16 21 C -0.12 -1.93 5.27 30.58 0.16 -1.77 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.02 1.00 8.14 -2.40 -0.02 0.98 16 25 H 0.27 4.19 8.06 -2.91 -0.02 4.16 16 26 H 0.09 2.27 7.33 -2.39 -0.02 2.25 16 27 H 0.09 1.11 7.99 -2.38 -0.02 1.09 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.11 7.98 -2.38 -0.02 1.09 16 Total: -1.00 -74.75 311.49 5.07 -69.68 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.05 Total: 3.79 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.64 Total: -13.15 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -2.44 Total: -103.76 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -1.21 Total: -1.95 kcal Total: -74.75 5.07 -69.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.144 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds