Wall clock time and date at job start Mon Mar 30 2020 07:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47297 * 2 1 4 4 C 1.46901 * 110.99847 * 300.90136 * 3 2 1 5 5 C 1.52997 * 109.47581 * 288.97732 * 4 3 2 6 6 C 1.46899 * 110.99818 * 64.85818 * 3 2 1 7 7 H 1.09003 * 109.46863 * 296.04210 * 6 3 2 8 8 C 1.50695 * 109.46849 * 176.04797 * 6 3 2 9 9 H 1.08002 * 120.00563 * 125.75195 * 8 6 3 10 10 C 1.37876 * 120.00053 * 305.74786 * 8 6 3 11 11 N 1.31515 * 120.00237 * 5.44210 * 10 8 6 12 12 Si 1.86800 * 120.00117 * 185.44389 * 10 8 6 13 13 H 1.48495 * 109.47391 * 90.00134 * 12 10 8 14 14 H 1.48503 * 109.47176 * 210.00263 * 12 10 8 15 15 H 1.48495 * 109.47181 * 329.99593 * 12 10 8 16 16 C 1.50694 * 109.47138 * 56.04439 * 6 3 2 17 17 C 1.38245 * 119.98698 * 34.57627 * 16 6 3 18 18 C 1.38211 * 120.01003 * 179.97438 * 17 16 6 19 19 C 1.38354 * 119.99217 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.01511 * 180.02562 * 19 18 17 21 21 C 1.38352 * 119.96841 * 0.27925 * 19 18 17 22 22 C 1.38210 * 119.98645 * 359.40426 * 21 19 18 23 23 H 1.08994 * 109.47681 * 185.10252 * 1 2 3 24 24 H 1.09001 * 109.46836 * 305.10603 * 1 2 3 25 25 H 1.09001 * 109.47417 * 65.09915 * 1 2 3 26 26 H 1.09008 * 109.46680 * 240.00503 * 2 1 3 27 27 H 1.08995 * 109.47452 * 120.00044 * 2 1 3 28 28 H 1.09002 * 109.47136 * 48.98071 * 4 3 2 29 29 H 1.09007 * 109.46908 * 168.97915 * 4 3 2 30 30 H 1.09000 * 109.47738 * 185.03550 * 5 4 3 31 31 H 1.09006 * 109.47055 * 305.04087 * 5 4 3 32 32 H 1.09001 * 109.46815 * 65.03437 * 5 4 3 33 33 H 0.96992 * 120.00558 * 179.97438 * 11 10 8 34 34 H 1.08000 * 119.99539 * 359.97438 * 17 16 6 35 35 H 1.08008 * 120.00365 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00433 * 179.72441 * 21 19 18 37 37 H 1.08011 * 119.99374 * 180.32336 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5311 2.1161 -1.1768 5 6 2.2376 1.5957 -2.4301 6 6 1.6458 2.0755 1.2415 7 1 0.5601 2.1507 1.3026 8 6 2.2462 3.4577 1.2478 9 1 1.6144 4.3203 1.4004 10 6 3.6021 3.6213 1.0588 11 7 4.3553 2.5835 0.7668 12 14 4.3694 5.3170 1.2174 13 1 4.7902 5.5403 2.6239 14 1 5.5533 5.4100 0.3258 15 1 3.3748 6.3488 0.8285 16 6 2.1629 1.2978 2.4241 17 6 3.3660 0.6227 2.3346 18 6 3.8409 -0.0903 3.4192 19 6 3.1119 -0.1288 4.5944 20 17 3.7083 -1.0237 5.9573 21 6 1.9049 0.5418 4.6813 22 6 1.4342 1.2599 3.5983 23 1 -0.3634 -1.0235 0.0914 24 1 -0.3633 0.5910 0.8407 25 1 -0.3634 0.4327 -0.9321 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.4561 1.9664 -1.2770 29 1 1.7403 3.1792 -1.0567 30 1 1.9422 2.1971 -3.2899 31 1 3.3169 1.6630 -2.2932 32 1 1.9570 0.5563 -2.6002 33 1 5.3091 2.6985 0.6335 34 1 3.9348 0.6525 1.4170 35 1 4.7811 -0.6173 3.3492 36 1 1.3332 0.5084 5.5970 37 1 0.4944 1.7878 3.6677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082302546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:30 Heat of formation + Delta-G solvation = 27.910563 kcal Electronic energy + Delta-G solvation = -19100.547869 eV Core-core repulsion = 16289.930552 eV Total energy + Delta-G solvation = -2810.617317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.87249 -36.97816 -35.68627 -32.93959 -30.98414 -30.27570 -29.85582 -28.00993 -26.01883 -22.94689 -22.91603 -21.68351 -20.35999 -18.84496 -16.52070 -16.04837 -15.34228 -14.80906 -14.37655 -14.21612 -13.87808 -13.13137 -12.98876 -12.70739 -12.52904 -12.28786 -12.13412 -11.95960 -11.48272 -11.20485 -11.00378 -10.92922 -10.82737 -10.68801 -10.63553 -10.33515 -10.14811 -10.00553 -9.87737 -9.40578 -9.22531 -8.57551 -8.03785 -7.45115 -6.79600 -5.95896 -4.16349 2.15366 2.30989 2.81172 3.26605 3.33955 3.36568 4.36136 4.69653 5.08229 5.33717 5.67292 5.68834 5.74355 5.86268 6.02940 6.09769 6.21383 6.27409 6.29772 6.36238 6.42039 6.48749 6.57318 6.66961 6.69800 6.78403 6.90337 7.02005 7.10215 7.17585 7.23837 7.43709 7.75026 7.79598 8.03234 8.07714 8.43486 8.63530 8.95336 9.50528 10.96150 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.008145 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.909577 B = 3436.835043 C = 4489.643664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 N -0.487 5.487 4 C 0.064 3.936 5 C -0.139 4.139 6 C 0.245 3.755 7 H 0.003 0.997 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.089 3.911 11 N -0.827 5.827 12 Si 0.881 3.119 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.022 4.022 17 C -0.058 4.058 18 C -0.136 4.136 19 C -0.058 4.058 20 Cl -0.111 7.111 21 C -0.130 4.130 22 C -0.127 4.127 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.257 0.743 34 H 0.176 0.824 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -4.900 0.646 5.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.088 4.088 3 N -0.210 5.210 4 C -0.064 4.064 5 C -0.197 4.197 6 C 0.139 3.861 7 H 0.020 0.980 8 C -0.566 4.566 9 H 0.076 0.924 10 C -0.119 4.119 11 N -0.459 5.459 12 Si 0.709 3.291 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.024 4.024 17 C -0.076 4.076 18 C -0.155 4.155 19 C -0.084 4.084 20 Cl -0.083 7.083 21 C -0.149 4.149 22 C -0.146 4.146 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.193 0.807 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.482 -5.039 0.678 5.658 hybrid contribution -0.298 0.925 0.526 1.105 sum -2.781 -4.113 1.205 5.109 Atomic orbital electron populations 1.22433 1.00406 1.00614 1.01440 1.22259 0.91222 0.94127 1.01232 1.62320 1.57629 0.98972 1.02031 1.21796 0.94143 1.00402 0.90062 1.21715 1.02223 0.99059 0.96659 1.18249 0.91728 0.91936 0.84183 0.97956 1.20847 0.93116 0.90421 1.52173 0.92398 1.24869 0.97140 0.96046 0.93857 1.69904 1.05089 1.28404 1.42544 0.86790 0.79064 0.85239 0.78057 1.20716 1.21164 1.20030 1.20449 0.94193 0.91803 0.95925 1.21985 0.94814 0.91373 0.99477 1.21153 0.99803 1.02094 0.92486 1.20760 0.97272 1.01559 0.88812 1.98287 1.88579 1.75251 1.46136 1.20660 0.95270 0.99963 0.99043 1.20868 1.00378 1.00032 0.93290 0.93781 0.92731 0.93122 0.92479 0.91437 0.97267 0.89772 0.94327 0.91758 0.94420 0.93221 0.80685 0.86833 0.86894 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 9.21 37.16 0.34 -2.79 16 2 C 0.04 0.75 5.42 -3.82 -0.02 0.73 16 3 N -0.49 -10.13 2.60 -229.44 -0.60 -10.73 16 4 C 0.06 1.26 5.36 -3.83 -0.02 1.24 16 5 C -0.14 -2.42 9.83 37.16 0.37 -2.05 16 6 C 0.25 5.48 1.57 -70.02 -0.11 5.37 16 7 H 0.00 0.06 6.43 -51.93 -0.33 -0.27 16 8 C -0.53 -13.07 7.14 -34.44 -0.25 -13.31 16 9 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 10 C 0.09 2.20 5.22 -17.82 -0.09 2.11 16 11 N -0.83 -20.44 8.92 55.43 0.49 -19.94 16 12 Si 0.88 19.92 29.54 -169.99 -5.02 14.90 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 C -0.02 -0.48 3.76 -104.62 -0.39 -0.88 16 17 C -0.06 -1.25 6.45 -39.59 -0.26 -1.51 16 18 C -0.14 -2.70 9.83 -39.55 -0.39 -3.09 16 19 C -0.06 -1.09 6.32 -39.50 -0.25 -1.34 16 20 Cl -0.11 -1.83 28.96 -51.86 -1.50 -3.33 16 21 C -0.13 -2.42 9.83 -39.55 -0.39 -2.81 16 22 C -0.13 -2.52 9.68 -39.59 -0.38 -2.91 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.95 6.37 -51.93 -0.33 0.62 16 25 H 0.05 0.81 6.44 -51.93 -0.33 0.48 16 26 H 0.06 1.00 6.81 -51.92 -0.35 0.65 16 27 H 0.07 1.30 5.76 -51.93 -0.30 1.00 16 28 H 0.01 0.18 5.86 -51.93 -0.30 -0.13 16 29 H 0.08 1.85 6.64 -51.93 -0.35 1.51 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.61 6.96 -51.93 -0.36 0.25 16 33 H 0.26 6.26 8.31 -40.82 -0.34 5.92 16 34 H 0.18 4.09 5.48 -52.49 -0.29 3.80 16 35 H 0.11 2.07 8.06 -52.48 -0.42 1.64 16 36 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -24.08 302.46 -8.94 -33.02 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.03 Total: 2.75 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -1.84 Total: -21.24 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: -0.10 Total: -30.67 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.50 Total: -3.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -24.08 -8.94 -33.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082302546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.933 kcal (2) G-P(sol) polarization free energy of solvation -24.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds