Wall clock time and date at job start Mon Mar 30 2020 07:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47297 * 2 1 4 4 C 1.46901 * 110.99847 * 300.90136 * 3 2 1 5 5 C 1.52997 * 109.47581 * 288.97732 * 4 3 2 6 6 C 1.46899 * 110.99818 * 64.85818 * 3 2 1 7 7 H 1.09003 * 109.46863 * 296.04210 * 6 3 2 8 8 C 1.50695 * 109.46849 * 176.04797 * 6 3 2 9 9 H 1.08002 * 120.00563 * 125.75195 * 8 6 3 10 10 C 1.37876 * 120.00053 * 305.74786 * 8 6 3 11 11 N 1.31515 * 120.00237 * 5.44210 * 10 8 6 12 12 Si 1.86800 * 120.00117 * 185.44389 * 10 8 6 13 13 H 1.48495 * 109.47391 * 90.00134 * 12 10 8 14 14 H 1.48503 * 109.47176 * 210.00263 * 12 10 8 15 15 H 1.48495 * 109.47181 * 329.99593 * 12 10 8 16 16 C 1.50694 * 109.47138 * 56.04439 * 6 3 2 17 17 C 1.38245 * 119.98698 * 34.57627 * 16 6 3 18 18 C 1.38211 * 120.01003 * 179.97438 * 17 16 6 19 19 C 1.38354 * 119.99217 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.01511 * 180.02562 * 19 18 17 21 21 C 1.38352 * 119.96841 * 0.27925 * 19 18 17 22 22 C 1.38210 * 119.98645 * 359.40426 * 21 19 18 23 23 H 1.08994 * 109.47681 * 185.10252 * 1 2 3 24 24 H 1.09001 * 109.46836 * 305.10603 * 1 2 3 25 25 H 1.09001 * 109.47417 * 65.09915 * 1 2 3 26 26 H 1.09008 * 109.46680 * 240.00503 * 2 1 3 27 27 H 1.08995 * 109.47452 * 120.00044 * 2 1 3 28 28 H 1.09002 * 109.47136 * 48.98071 * 4 3 2 29 29 H 1.09007 * 109.46908 * 168.97915 * 4 3 2 30 30 H 1.09000 * 109.47738 * 185.03550 * 5 4 3 31 31 H 1.09006 * 109.47055 * 305.04087 * 5 4 3 32 32 H 1.09001 * 109.46815 * 65.03437 * 5 4 3 33 33 H 0.96992 * 120.00558 * 179.97438 * 11 10 8 34 34 H 1.08000 * 119.99539 * 359.97438 * 17 16 6 35 35 H 1.08008 * 120.00365 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00433 * 179.72441 * 21 19 18 37 37 H 1.08011 * 119.99374 * 180.32336 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5311 2.1161 -1.1768 5 6 2.2376 1.5957 -2.4301 6 6 1.6458 2.0755 1.2415 7 1 0.5601 2.1507 1.3026 8 6 2.2462 3.4577 1.2478 9 1 1.6144 4.3203 1.4004 10 6 3.6021 3.6213 1.0588 11 7 4.3553 2.5835 0.7668 12 14 4.3694 5.3170 1.2174 13 1 4.7902 5.5403 2.6239 14 1 5.5533 5.4100 0.3258 15 1 3.3748 6.3488 0.8285 16 6 2.1629 1.2978 2.4241 17 6 3.3660 0.6227 2.3346 18 6 3.8409 -0.0903 3.4192 19 6 3.1119 -0.1288 4.5944 20 17 3.7083 -1.0237 5.9573 21 6 1.9049 0.5418 4.6813 22 6 1.4342 1.2599 3.5983 23 1 -0.3634 -1.0235 0.0914 24 1 -0.3633 0.5910 0.8407 25 1 -0.3634 0.4327 -0.9321 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.4561 1.9664 -1.2770 29 1 1.7403 3.1792 -1.0567 30 1 1.9422 2.1971 -3.2899 31 1 3.3169 1.6630 -2.2932 32 1 1.9570 0.5563 -2.6002 33 1 5.3091 2.6985 0.6335 34 1 3.9348 0.6525 1.4170 35 1 4.7811 -0.6173 3.3492 36 1 1.3332 0.5084 5.5970 37 1 0.4944 1.7878 3.6677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082302546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:29 Heat of formation + Delta-G solvation = 18.584685 kcal Electronic energy + Delta-G solvation = -19100.952269 eV Core-core repulsion = 16289.930552 eV Total energy + Delta-G solvation = -2811.021717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45232 -38.51147 -37.11613 -34.71897 -32.57287 -31.81125 -31.39808 -29.57590 -27.70392 -24.64820 -24.41216 -23.22673 -21.92807 -20.44790 -18.26554 -17.60212 -17.00765 -16.47304 -15.94787 -15.84360 -15.46203 -14.69031 -14.51343 -14.19389 -14.07451 -13.84833 -13.68164 -13.48112 -12.99118 -12.75779 -12.73236 -12.59763 -12.40732 -12.22128 -12.13076 -11.91337 -11.70892 -11.57722 -11.46576 -10.99556 -10.93555 -10.45143 -9.59512 -9.04278 -8.39676 -7.81066 -6.07316 0.59172 0.75808 1.35073 1.43281 1.48878 1.52680 2.49612 3.09887 3.30425 3.68507 4.17108 4.24702 4.31399 4.42389 4.57613 4.64813 4.69970 4.78383 4.79620 4.90885 4.96143 4.97263 5.08295 5.14733 5.22553 5.26290 5.43146 5.47256 5.52864 5.64105 5.68409 5.73618 5.91708 6.17702 6.28621 6.40992 6.65782 7.01701 7.20529 7.60337 9.06186 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.008145 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.909577 B = 3436.835043 C = 4489.643664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.043 3.957 3 N -0.499 5.499 4 C 0.065 3.935 5 C -0.127 4.127 6 C 0.249 3.751 7 H -0.006 1.006 8 C -0.545 4.545 9 H 0.042 0.958 10 C 0.061 3.939 11 N -0.833 5.833 12 Si 0.923 3.077 13 H -0.288 1.288 14 H -0.285 1.285 15 H -0.277 1.277 16 C -0.039 4.039 17 C -0.068 4.068 18 C -0.141 4.141 19 C -0.060 4.060 20 Cl -0.086 7.086 21 C -0.125 4.125 22 C -0.134 4.134 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -5.881 1.173 7.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.086 4.086 3 N -0.222 5.222 4 C -0.064 4.064 5 C -0.185 4.185 6 C 0.143 3.857 7 H 0.011 0.989 8 C -0.582 4.582 9 H 0.060 0.940 10 C -0.146 4.146 11 N -0.466 5.466 12 Si 0.751 3.249 13 H -0.214 1.214 14 H -0.210 1.210 15 H -0.202 1.202 16 C -0.040 4.040 17 C -0.087 4.087 18 C -0.160 4.160 19 C -0.086 4.086 20 Cl -0.057 7.057 21 C -0.144 4.144 22 C -0.153 4.153 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.883 -6.027 1.202 6.788 hybrid contribution -0.194 1.168 0.423 1.257 sum -3.077 -4.860 1.625 5.977 Atomic orbital electron populations 1.22315 0.98728 1.01756 1.01107 1.22225 0.92572 0.92601 1.01156 1.62208 1.58333 0.99978 1.01644 1.21775 0.95035 0.98772 0.90768 1.21602 1.00413 1.00276 0.96228 1.18111 0.90947 0.91310 0.85360 0.98883 1.20970 0.93299 0.91335 1.52639 0.93963 1.25239 0.97437 0.97864 0.94037 1.70021 1.04782 1.28907 1.42869 0.86136 0.78312 0.83099 0.77336 1.21447 1.21045 1.20224 1.20439 0.94708 0.92639 0.96238 1.21753 0.94939 0.92516 0.99456 1.21261 1.00383 1.01859 0.92474 1.20859 0.97156 1.01306 0.89293 1.98296 1.88309 1.74543 1.44572 1.20931 0.95201 0.98741 0.99503 1.21059 1.00799 1.00290 0.93140 0.91645 0.94080 0.92566 0.91538 0.92476 0.96228 0.92675 0.92247 0.93939 0.92927 0.93590 0.82693 0.85635 0.84228 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 9.21 71.98 0.66 -5.01 16 2 C 0.04 1.55 5.42 86.30 0.47 2.02 16 3 N -0.50 -20.84 2.60 -879.80 -2.29 -23.12 16 4 C 0.06 2.54 5.36 86.30 0.46 3.01 16 5 C -0.13 -4.32 9.83 71.98 0.71 -3.61 16 6 C 0.25 11.30 1.57 43.42 0.07 11.36 16 7 H -0.01 -0.29 6.43 -2.39 -0.02 -0.31 16 8 C -0.54 -27.52 7.14 25.60 0.18 -27.33 16 9 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 10 C 0.06 3.06 5.22 84.65 0.44 3.51 16 11 N -0.83 -41.75 8.92 21.45 0.19 -41.56 16 12 Si 0.92 41.38 29.54 68.60 2.03 43.41 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 C -0.04 -1.69 3.76 -19.86 -0.07 -1.76 16 17 C -0.07 -2.93 6.45 22.26 0.14 -2.78 16 18 C -0.14 -5.43 9.83 22.29 0.22 -5.21 16 19 C -0.06 -2.13 6.32 22.32 0.14 -1.99 16 20 Cl -0.09 -2.60 28.96 -2.72 -0.08 -2.68 16 21 C -0.13 -4.37 9.83 22.29 0.22 -4.15 16 22 C -0.13 -5.20 9.68 22.26 0.22 -4.98 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.40 6.37 -2.39 -0.02 1.38 16 25 H 0.06 1.69 6.44 -2.39 -0.02 1.68 16 26 H 0.07 2.25 6.81 -2.38 -0.02 2.23 16 27 H 0.06 2.18 5.76 -2.39 -0.01 2.17 16 28 H 0.02 0.73 5.86 -2.39 -0.01 0.71 16 29 H 0.05 2.48 6.64 -2.38 -0.02 2.46 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.05 1.60 6.96 -2.39 -0.02 1.59 16 33 H 0.25 12.52 8.31 -92.71 -0.77 11.75 16 34 H 0.16 7.35 5.48 -2.91 -0.02 7.34 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.12 4.43 8.06 -2.90 -0.02 4.40 16 Total: -1.00 -50.59 302.46 4.77 -45.82 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.06 Total: 15.07 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.86 Total: -36.93 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -2.09 Total: -64.68 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -50.59 4.77 -45.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082302546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.402 kcal (2) G-P(sol) polarization free energy of solvation -50.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds