Wall clock time and date at job start Mon Mar 30 2020 07:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36090 * 117.00210 * 2 1 4 4 C 1.38587 * 119.98144 * 359.97438 * 3 2 1 5 5 C 1.38282 * 120.13797 * 179.97438 * 4 3 2 6 6 C 1.38745 * 120.09406 * 0.02562 * 5 4 3 7 7 N 1.40227 * 120.00848 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00573 * 359.97438 * 7 6 5 9 9 C 1.50701 * 109.47169 * 179.97438 * 8 7 6 10 10 H 1.07992 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99854 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99739 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00154 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46705 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47252 * 119.99934 * 13 11 9 16 16 H 1.48496 * 109.47281 * 240.00520 * 13 11 9 17 17 C 1.39156 * 119.97154 * 359.97438 * 6 5 4 18 18 O 1.36115 * 120.06751 * 180.02562 * 17 6 5 19 19 C 1.42899 * 117.00149 * 90.00170 * 18 17 6 20 20 C 1.38836 * 119.86660 * 359.72552 * 17 6 5 21 21 O 1.36091 * 120.05644 * 180.27398 * 20 17 6 22 22 C 1.42897 * 117.00195 * 270.27422 * 21 20 17 23 23 H 1.09002 * 109.47382 * 300.00356 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00463 * 1 2 3 26 26 H 1.08000 * 119.93345 * 0.03300 * 4 3 2 27 27 H 1.07992 * 119.95172 * 180.02562 * 5 4 3 28 28 H 0.97007 * 119.99829 * 180.02562 * 7 6 5 29 29 H 1.08990 * 109.47055 * 300.00397 * 8 7 6 30 30 H 1.09005 * 109.46864 * 59.99932 * 8 7 6 31 31 H 0.97007 * 119.99697 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.47308 * 59.99387 * 19 18 17 33 33 H 1.09002 * 109.47092 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.46870 * 299.99490 * 19 18 17 35 35 H 1.08991 * 109.47320 * 179.97438 * 22 21 20 36 36 H 1.08997 * 109.47112 * 299.99943 * 22 21 20 37 37 H 1.09000 * 109.46937 * 59.99490 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 1.2918 2.3746 -0.0005 5 6 1.9162 3.6084 0.0000 6 6 3.3015 3.6870 0.0005 7 7 3.9328 4.9391 0.0016 8 6 3.1299 6.1645 0.0016 9 6 4.0430 7.3634 0.0035 10 1 5.1142 7.2263 0.0042 11 6 3.5108 8.6353 0.0033 12 7 2.2063 8.8022 0.0020 13 14 4.6425 10.1214 0.0050 14 1 6.0563 9.6668 0.0057 15 1 4.3868 10.9397 -1.2075 16 1 4.3843 10.9389 1.2174 17 6 4.0638 2.5229 0.0011 18 8 5.4229 2.5977 0.0021 19 6 6.0697 2.6333 1.2759 20 6 3.4354 1.2849 0.0068 21 8 4.1772 0.1440 0.0130 22 6 4.5368 -0.4030 -1.2572 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.2133 2.3165 -0.0004 27 1 1.3249 4.5120 0.0000 28 1 4.9014 4.9939 0.0016 29 1 2.5017 6.1872 -0.8887 30 1 2.5003 6.1863 0.8912 31 1 1.8318 9.6971 0.0022 32 1 5.8258 1.7286 1.8327 33 1 7.1488 2.6932 1.1338 34 1 5.7280 3.5059 1.8326 35 1 5.1255 -1.3083 -1.1095 36 1 3.6337 -0.6439 -1.8179 37 1 5.1258 0.3264 -1.8132 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084917975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:29 Heat of formation + Delta-G solvation = -102.098385 kcal Electronic energy + Delta-G solvation = -20572.082160 eV Core-core repulsion = 17315.118067 eV Total energy + Delta-G solvation = -3256.964092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67783 -39.71060 -38.79939 -37.81871 -35.97587 -34.32629 -31.08037 -30.48668 -28.69188 -28.06242 -27.28678 -27.18452 -24.88435 -22.99201 -22.29795 -19.73612 -19.05384 -18.27260 -18.06167 -17.32571 -17.05520 -16.63491 -16.54327 -16.23830 -15.86294 -15.58315 -15.41388 -15.11411 -14.88846 -14.20327 -13.93094 -13.64804 -13.47717 -13.27442 -12.83103 -12.79111 -12.66390 -12.52155 -12.23594 -12.08913 -12.00733 -11.44121 -11.33551 -10.82110 -10.65168 -10.29100 -9.61716 -8.31098 -7.97592 -6.43927 0.00988 0.53264 1.40870 1.41547 1.54491 2.21265 2.32015 2.44128 2.78227 2.87057 3.04497 3.21395 3.95553 4.09797 4.29061 4.36756 4.45225 4.47809 4.48993 4.51527 4.52002 4.56215 4.74986 4.78250 4.78706 4.87508 5.03226 5.17613 5.30162 5.30792 5.41645 5.54966 5.87287 6.09371 6.39324 6.46453 6.66551 6.79699 7.08502 7.28779 8.80710 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.004860 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.976768 B = 5759.599631 C = 6679.591717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.047 3.953 4 C -0.135 4.135 5 C -0.170 4.170 6 C 0.176 3.824 7 N -0.727 5.727 8 C 0.273 3.727 9 C -0.556 4.556 10 H 0.066 0.934 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.276 1.276 17 C 0.012 3.988 18 O -0.334 6.334 19 C 0.032 3.968 20 C 0.083 3.917 21 O -0.337 6.337 22 C 0.038 3.962 23 H 0.061 0.939 24 H 0.121 0.879 25 H 0.062 0.938 26 H 0.161 0.839 27 H 0.124 0.876 28 H 0.396 0.604 29 H -0.004 1.004 30 H -0.003 1.003 31 H 0.269 0.731 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -16.515 -0.054 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.000 4.000 4 C -0.154 4.154 5 C -0.193 4.193 6 C 0.069 3.931 7 N -0.354 5.354 8 C 0.150 3.850 9 C -0.594 4.594 10 H 0.085 0.915 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.799 3.201 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.037 4.037 18 O -0.251 6.251 19 C -0.063 4.063 20 C 0.038 3.962 21 O -0.253 6.253 22 C -0.055 4.055 23 H 0.079 0.921 24 H 0.139 0.861 25 H 0.081 0.919 26 H 0.179 0.821 27 H 0.142 0.858 28 H 0.230 0.770 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.134 0.866 36 H 0.065 0.935 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.040 -16.487 -0.055 16.487 hybrid contribution 0.241 1.317 0.022 1.339 sum 0.281 -15.170 -0.033 15.172 Atomic orbital electron populations 1.23330 0.76888 1.05426 1.02061 1.86082 1.22885 1.25277 1.89761 1.18872 0.90645 0.85526 1.04998 1.21137 1.01041 0.89951 1.03277 1.20580 0.92016 0.98617 1.08102 1.18399 0.92551 0.85855 0.96302 1.45125 1.08609 1.02156 1.79545 1.18629 0.91115 0.81033 0.94220 1.21569 0.93718 0.91449 1.52705 0.91544 1.25842 0.96779 1.02155 0.93938 1.70065 1.12267 1.23807 1.50110 0.85251 0.78837 0.78105 0.77908 1.18751 1.20222 1.20142 1.18108 0.83543 0.89748 1.12325 1.86019 1.14721 1.93903 1.30473 1.23155 0.98590 1.00395 0.84122 1.18010 0.87219 0.85409 1.05566 1.85951 1.70684 1.37741 1.30961 1.23099 0.99856 0.98903 0.83681 0.92073 0.86119 0.91948 0.82112 0.85808 0.76952 0.98610 0.98499 0.92173 0.93191 0.86547 0.94575 0.86554 0.93458 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -9.06 10.28 -80.58 -0.83 -9.89 16 3 C 0.05 1.50 6.70 22.55 0.15 1.65 16 4 C -0.13 -4.19 9.03 22.36 0.20 -3.99 16 5 C -0.17 -6.43 9.31 22.40 0.21 -6.22 16 6 C 0.18 7.19 6.67 38.14 0.25 7.45 16 7 N -0.73 -32.71 5.73 -342.58 -1.96 -34.68 16 8 C 0.27 14.28 4.67 85.63 0.40 14.68 16 9 C -0.56 -30.57 9.28 25.60 0.24 -30.33 16 10 H 0.07 3.52 7.60 -2.91 -0.02 3.49 16 11 C 0.01 0.71 5.46 84.66 0.46 1.17 16 12 N -0.92 -53.33 13.29 21.45 0.28 -53.05 16 13 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.01 0.46 5.75 22.63 0.13 0.59 16 18 O -0.33 -11.91 9.44 -80.85 -0.76 -12.68 16 19 C 0.03 0.91 11.13 113.37 1.26 2.17 16 20 C 0.08 2.93 5.75 22.61 0.13 3.06 16 21 O -0.34 -10.96 9.98 -70.39 -0.70 -11.66 16 22 C 0.04 0.95 11.13 113.37 1.26 2.22 16 23 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 26 H 0.16 3.83 6.28 -2.91 -0.02 3.81 16 27 H 0.12 4.95 6.73 -2.91 -0.02 4.93 16 28 H 0.40 17.25 7.68 -92.70 -0.71 16.54 16 29 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 16 30 H 0.00 -0.16 7.95 -2.38 -0.02 -0.17 16 31 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.40 319.09 4.23 -61.16 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.37 Total: 22.34 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.81 Total: -6.13 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.68 Total: -87.73 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -2.29 Total: -34.23 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.40 4.23 -61.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084917975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.934 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds