Wall clock time and date at job start Mon Mar 30 2020 07:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47614 * 2 1 4 4 C 1.50703 * 109.47203 * 239.99986 * 2 1 3 5 5 H 1.08000 * 120.00129 * 240.00119 * 4 2 1 6 6 C 1.37871 * 120.00009 * 59.99922 * 4 2 1 7 7 N 1.31523 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00176 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47171 * 90.00092 * 8 6 4 10 10 H 1.48498 * 109.47335 * 210.00125 * 8 6 4 11 11 H 1.48498 * 109.46968 * 330.00038 * 8 6 4 12 12 N 1.46901 * 109.47078 * 119.99892 * 2 1 3 13 13 C 1.46899 * 111.00081 * 302.82773 * 12 2 1 14 14 C 1.46904 * 110.99911 * 178.87349 * 12 2 1 15 15 H 1.08997 * 109.47183 * 315.31136 * 14 12 2 16 16 C 1.53003 * 109.47173 * 75.31319 * 14 12 2 17 17 C 1.50697 * 109.47081 * 195.31013 * 14 12 2 18 18 C 1.35171 * 125.60879 * 139.99874 * 17 14 12 19 19 C 1.40316 * 107.12516 * 179.76742 * 18 17 14 20 20 C 1.36636 * 106.70026 * 0.41070 * 19 18 17 21 21 C 1.46473 * 125.99353 * 179.85405 * 20 19 18 22 22 O 1.21625 * 120.00026 * 359.70939 * 21 20 19 23 23 O 1.34899 * 120.00099 * 179.71613 * 21 20 19 24 24 O 1.33917 * 125.61051 * 320.02688 * 17 14 12 25 25 H 1.08997 * 109.47158 * 185.25969 * 1 2 3 26 26 H 1.09003 * 109.46924 * 305.25680 * 1 2 3 27 27 H 1.09002 * 109.47206 * 65.24959 * 1 2 3 28 28 H 0.97006 * 119.99676 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.46782 * 296.04304 * 13 12 2 30 30 H 1.09001 * 109.47207 * 56.04822 * 13 12 2 31 31 H 1.08998 * 109.46905 * 176.04319 * 13 12 2 32 32 H 1.09003 * 109.46820 * 305.44367 * 16 14 12 33 33 H 1.09000 * 109.47103 * 65.44443 * 16 14 12 34 34 H 1.08995 * 109.46951 * 185.45290 * 16 14 12 35 35 H 1.07999 * 126.43657 * 0.02562 * 18 17 14 36 36 H 1.08005 * 126.64893 * 180.28169 * 19 18 17 37 37 H 0.96697 * 116.99769 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1122 11 1 3.6292 -1.7583 -3.7122 12 7 2.0196 -0.6925 1.1995 13 6 1.4941 -0.0665 2.4201 14 6 3.4879 -0.7355 1.2200 15 1 3.8571 -1.0135 0.2329 16 6 4.0332 0.6430 1.5988 17 6 3.9465 -1.7528 2.2328 18 6 4.9802 -2.6094 2.0753 19 6 5.0671 -3.3724 3.2497 20 6 4.0634 -2.9437 4.0716 21 6 3.7670 -3.4600 5.4099 22 8 4.4421 -4.3561 5.8793 23 8 2.7450 -2.9417 6.1218 24 8 3.3967 -1.9572 3.4366 25 1 -0.3633 -1.0233 0.0942 26 1 -0.3633 0.5932 0.8392 27 1 -0.3634 0.4303 -0.9333 28 1 0.7095 1.1618 -3.4844 29 1 1.8726 0.9527 2.4976 30 1 0.4051 -0.0476 2.3789 31 1 1.8148 -0.6403 3.2896 32 1 3.6236 1.3939 0.9232 33 1 3.7441 0.8792 2.6229 34 1 5.1203 0.6378 1.5200 35 1 5.6216 -2.6885 1.2100 36 1 5.7866 -4.1495 3.4618 37 1 2.5878 -3.3151 6.9997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091782513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:18 Heat of formation + Delta-G solvation = -64.179883 kcal Electronic energy + Delta-G solvation = -20821.127149 eV Core-core repulsion = 17565.807326 eV Total energy + Delta-G solvation = -3255.319823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.59333 -39.95049 -37.74136 -36.25160 -33.41833 -33.00809 -31.37879 -29.16709 -28.21183 -26.15001 -24.82651 -24.14624 -22.22787 -21.18061 -20.24873 -19.15863 -18.37081 -17.54410 -16.47731 -16.22097 -15.59172 -15.33047 -15.10859 -14.30786 -13.78671 -13.56482 -13.44156 -13.10060 -13.03057 -12.82993 -12.41729 -11.82620 -11.74618 -11.68021 -11.48789 -11.10852 -11.05552 -10.87510 -10.72233 -10.58476 -10.23025 -10.16818 -9.92493 -9.87050 -8.98938 -8.50217 -8.41787 -7.31562 -6.08843 -4.15029 0.92312 2.41257 2.51618 2.93979 3.26484 3.30857 3.33784 3.35699 4.34189 4.65823 4.98184 5.00400 5.21823 5.24651 5.53860 5.65740 5.66168 5.86206 5.91927 6.04342 6.10133 6.15785 6.23238 6.31011 6.45653 6.50099 6.60564 6.82453 6.99246 7.03171 7.12445 7.41359 7.60722 7.73159 7.75035 8.07438 8.23439 8.46387 8.90635 9.50925 10.97158 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.005080 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.787666 B = 5510.349756 C = 5984.727968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.211 3.789 3 H 0.006 0.994 4 C -0.510 4.510 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.013 3.987 14 C 0.151 3.849 15 H 0.133 0.867 16 C -0.179 4.179 17 C 0.090 3.910 18 C -0.240 4.240 19 C -0.092 4.092 20 C -0.101 4.101 21 C 0.576 3.424 22 O -0.508 6.508 23 O -0.504 6.504 24 O -0.138 6.138 25 H 0.034 0.966 26 H 0.010 0.990 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -3.295 11.592 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.253 5.253 13 C -0.135 4.135 14 C 0.041 3.959 15 H 0.150 0.850 16 C -0.237 4.237 17 C 0.035 3.965 18 C -0.260 4.260 19 C -0.112 4.112 20 C -0.151 4.151 21 C 0.422 3.578 22 O -0.399 6.399 23 O -0.315 6.315 24 O -0.032 6.032 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.261 -3.569 11.303 12.968 hybrid contribution 0.533 -0.015 -0.295 0.610 sum 5.794 -3.585 11.008 12.946 Atomic orbital electron populations 1.21863 0.97455 0.99047 1.00960 1.19307 0.92526 0.92196 0.85342 0.97654 1.21120 1.31497 1.12398 0.89787 0.91882 1.24914 0.95070 0.94964 0.99020 1.69886 1.36589 1.22827 1.23575 0.86534 0.79288 0.79342 0.82478 1.20624 1.21306 1.19844 1.62364 1.04261 1.54963 1.03750 1.22567 1.00864 0.96717 0.93377 1.20581 0.91011 0.89593 0.94676 0.84964 1.22422 1.01215 0.98097 1.02015 1.23625 0.91946 0.97263 0.83649 1.21573 1.03075 1.00434 1.00888 1.21893 0.97086 0.99727 0.92446 1.20488 1.00698 0.99661 0.94229 1.18908 0.77214 0.78755 0.82943 1.90969 1.50055 1.29222 1.69615 1.84713 1.49599 1.63162 1.34047 1.84233 1.48873 1.44003 1.26131 0.94704 0.97148 0.89290 0.92857 0.96091 0.91456 0.91951 0.90451 0.92594 0.92348 0.82270 0.82299 0.72688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.54 37.16 0.32 -2.88 16 2 C 0.21 5.02 1.90 -68.87 -0.13 4.89 16 3 H 0.01 0.15 6.81 -51.93 -0.35 -0.20 16 4 C -0.51 -13.08 7.71 -34.44 -0.27 -13.34 16 5 H 0.06 1.61 6.73 -52.49 -0.35 1.25 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 7 N -0.89 -24.22 11.29 55.43 0.63 -23.59 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.53 -10.93 4.52 -229.69 -1.04 -11.97 16 13 C 0.01 0.24 8.34 60.06 0.50 0.74 16 14 C 0.15 2.73 2.57 -68.86 -0.18 2.56 16 15 H 0.13 2.56 6.03 -51.93 -0.31 2.24 16 16 C -0.18 -2.88 8.16 37.16 0.30 -2.58 16 17 C 0.09 1.50 6.05 -35.40 -0.21 1.29 16 18 C -0.24 -3.52 10.76 -39.89 -0.43 -3.95 16 19 C -0.09 -1.29 10.62 -39.38 -0.42 -1.71 16 20 C -0.10 -1.56 7.18 -36.85 -0.26 -1.82 16 21 C 0.58 8.04 8.30 34.05 0.28 8.33 16 22 O -0.51 -7.74 17.65 -19.36 -0.34 -8.08 16 23 O -0.50 -5.68 13.44 -42.48 -0.57 -6.25 16 24 O -0.14 -2.34 8.19 4.74 0.04 -2.30 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.01 0.21 6.58 -51.93 -0.34 -0.13 16 27 H 0.09 2.31 5.95 -51.93 -0.31 2.00 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 29 H 0.02 0.37 6.31 -51.93 -0.33 0.04 16 30 H 0.07 1.23 6.15 -51.93 -0.32 0.91 16 31 H 0.06 1.10 5.60 -51.93 -0.29 0.81 16 32 H 0.08 1.37 6.77 -51.93 -0.35 1.01 16 33 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 36 H 0.16 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.41 2.32 9.11 45.56 0.42 2.73 16 LS Contribution 304.83 15.07 4.59 4.59 Total: -1.00 -29.57 304.83 -6.02 -35.59 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.72 Total: 3.59 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.59 Total: -6.94 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.41 Total: -35.56 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.87 Total: -16.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.57 -6.02 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091782513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.593 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds