Wall clock time and date at job start Mon Mar 30 2020 07:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47614 * 2 1 4 4 C 1.50703 * 109.47203 * 239.99986 * 2 1 3 5 5 H 1.08000 * 120.00129 * 240.00119 * 4 2 1 6 6 C 1.37871 * 120.00009 * 59.99922 * 4 2 1 7 7 N 1.31523 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00176 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47171 * 90.00092 * 8 6 4 10 10 H 1.48498 * 109.47335 * 210.00125 * 8 6 4 11 11 H 1.48498 * 109.46968 * 330.00038 * 8 6 4 12 12 N 1.46901 * 109.47078 * 119.99892 * 2 1 3 13 13 C 1.46899 * 111.00081 * 302.82773 * 12 2 1 14 14 C 1.46904 * 110.99911 * 178.87349 * 12 2 1 15 15 H 1.08997 * 109.47183 * 315.31136 * 14 12 2 16 16 C 1.53003 * 109.47173 * 75.31319 * 14 12 2 17 17 C 1.50697 * 109.47081 * 195.31013 * 14 12 2 18 18 C 1.35171 * 125.60879 * 139.99874 * 17 14 12 19 19 C 1.40316 * 107.12516 * 179.76742 * 18 17 14 20 20 C 1.36636 * 106.70026 * 0.41070 * 19 18 17 21 21 C 1.46473 * 125.99353 * 179.85405 * 20 19 18 22 22 O 1.21625 * 120.00026 * 359.70939 * 21 20 19 23 23 O 1.34899 * 120.00099 * 179.71613 * 21 20 19 24 24 O 1.33917 * 125.61051 * 320.02688 * 17 14 12 25 25 H 1.08997 * 109.47158 * 185.25969 * 1 2 3 26 26 H 1.09003 * 109.46924 * 305.25680 * 1 2 3 27 27 H 1.09002 * 109.47206 * 65.24959 * 1 2 3 28 28 H 0.97006 * 119.99676 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.46782 * 296.04304 * 13 12 2 30 30 H 1.09001 * 109.47207 * 56.04822 * 13 12 2 31 31 H 1.08998 * 109.46905 * 176.04319 * 13 12 2 32 32 H 1.09003 * 109.46820 * 305.44367 * 16 14 12 33 33 H 1.09000 * 109.47103 * 65.44443 * 16 14 12 34 34 H 1.08995 * 109.46951 * 185.45290 * 16 14 12 35 35 H 1.07999 * 126.43657 * 0.02562 * 18 17 14 36 36 H 1.08005 * 126.64893 * 180.28169 * 19 18 17 37 37 H 0.96697 * 116.99769 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1122 11 1 3.6292 -1.7583 -3.7122 12 7 2.0196 -0.6925 1.1995 13 6 1.4941 -0.0665 2.4201 14 6 3.4879 -0.7355 1.2200 15 1 3.8571 -1.0135 0.2329 16 6 4.0332 0.6430 1.5988 17 6 3.9465 -1.7528 2.2328 18 6 4.9802 -2.6094 2.0753 19 6 5.0671 -3.3724 3.2497 20 6 4.0634 -2.9437 4.0716 21 6 3.7670 -3.4600 5.4099 22 8 4.4421 -4.3561 5.8793 23 8 2.7450 -2.9417 6.1218 24 8 3.3967 -1.9572 3.4366 25 1 -0.3633 -1.0233 0.0942 26 1 -0.3633 0.5932 0.8392 27 1 -0.3634 0.4303 -0.9333 28 1 0.7095 1.1618 -3.4844 29 1 1.8726 0.9527 2.4976 30 1 0.4051 -0.0476 2.3789 31 1 1.8148 -0.6403 3.2896 32 1 3.6236 1.3939 0.9232 33 1 3.7441 0.8792 2.6229 34 1 5.1203 0.6378 1.5200 35 1 5.6216 -2.6885 1.2100 36 1 5.7866 -4.1495 3.4618 37 1 2.5878 -3.3151 6.9997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091782513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:18 Heat of formation + Delta-G solvation = -83.817255 kcal Electronic energy + Delta-G solvation = -20821.978690 eV Core-core repulsion = 17565.807326 eV Total energy + Delta-G solvation = -3256.171363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.78244 -40.99403 -39.32516 -37.24522 -35.21358 -34.24087 -32.95748 -30.58144 -29.76653 -27.84107 -26.35832 -25.62369 -23.52419 -22.42413 -21.56311 -20.75976 -19.44230 -18.63297 -18.18577 -17.59336 -17.22148 -16.75732 -16.23851 -16.00990 -15.26752 -14.95603 -14.70693 -14.52382 -14.18453 -14.07254 -13.92291 -13.55969 -13.12143 -12.99962 -12.82270 -12.72101 -12.57474 -12.46064 -12.33013 -12.15407 -12.05452 -11.88897 -11.60008 -11.05363 -10.88315 -10.46884 -9.65369 -8.94445 -8.07923 -6.19787 -0.21256 1.24732 1.42870 1.46200 1.48511 1.56824 1.84284 2.25217 2.45556 3.17915 3.27708 3.67035 3.89058 4.12325 4.26337 4.34707 4.51592 4.56610 4.62711 4.67221 4.77168 4.81018 4.85113 4.97456 5.03365 5.17206 5.21718 5.25827 5.31356 5.39007 5.52789 5.74251 5.78725 5.94086 6.29063 6.36574 6.67734 6.85967 6.93242 7.49595 8.97450 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.005080 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.787666 B = 5510.349756 C = 5984.727968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.218 3.782 3 H -0.019 1.019 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.541 5.541 13 C 0.018 3.982 14 C 0.152 3.848 15 H 0.117 0.883 16 C -0.170 4.170 17 C 0.065 3.935 18 C -0.229 4.229 19 C -0.087 4.087 20 C -0.115 4.115 21 C 0.583 3.417 22 O -0.523 6.523 23 O -0.502 6.502 24 O -0.152 6.152 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -4.348 12.389 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.112 3.888 3 H -0.001 1.001 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.265 5.265 13 C -0.130 4.130 14 C 0.043 3.957 15 H 0.135 0.865 16 C -0.228 4.228 17 C 0.011 3.989 18 C -0.248 4.248 19 C -0.106 4.106 20 C -0.164 4.164 21 C 0.429 3.571 22 O -0.416 6.416 23 O -0.316 6.316 24 O -0.048 6.048 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.198 0.802 36 H 0.201 0.799 37 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 6.404 -4.628 12.136 14.482 hybrid contribution 0.169 0.292 -0.429 0.546 sum 6.573 -4.336 11.707 14.109 Atomic orbital electron populations 1.21716 0.97641 0.98709 1.00405 1.19066 0.92359 0.90961 0.86430 1.00130 1.21381 1.31229 1.12255 0.90731 0.92048 1.25625 0.95325 0.95613 1.01681 1.70008 1.37658 1.24081 1.24015 0.85605 0.79029 0.78156 0.79153 1.20754 1.21226 1.18778 1.62265 1.06225 1.54707 1.03295 1.22537 1.00599 0.97104 0.92715 1.20446 0.89379 0.91088 0.94774 0.86529 1.22320 1.02521 0.96338 1.01669 1.23345 0.93340 0.98293 0.83894 1.21873 1.02203 0.99101 1.01592 1.22211 0.96966 0.99742 0.91711 1.20943 1.01006 0.99395 0.95062 1.18718 0.77401 0.78355 0.82648 1.90965 1.50783 1.29910 1.69903 1.84665 1.48350 1.62984 1.35616 1.84168 1.49521 1.44785 1.26303 0.95219 0.95289 0.91757 0.92978 0.95498 0.91749 0.90957 0.92570 0.91912 0.90040 0.80201 0.79933 0.69868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.54 71.98 0.61 -5.44 16 2 C 0.22 10.50 1.90 44.17 0.08 10.58 16 3 H -0.02 -0.98 6.81 -2.39 -0.02 -1.00 16 4 C -0.52 -26.76 7.71 25.60 0.20 -26.56 16 5 H 0.06 3.13 6.73 -2.91 -0.02 3.11 16 6 C 0.02 0.87 5.29 84.65 0.45 1.32 16 7 N -0.92 -50.73 11.29 21.45 0.24 -50.48 16 8 Si 0.95 41.75 29.54 68.60 2.03 43.77 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 12 N -0.54 -22.24 4.52 -880.60 -3.98 -26.23 16 13 C 0.02 0.66 8.34 127.69 1.07 1.73 16 14 C 0.15 5.43 2.57 44.17 0.11 5.55 16 15 H 0.12 4.49 6.03 -2.39 -0.01 4.48 16 16 C -0.17 -5.36 8.16 71.98 0.59 -4.77 16 17 C 0.07 2.09 6.05 24.98 0.15 2.24 16 18 C -0.23 -6.16 10.76 22.07 0.24 -5.92 16 19 C -0.09 -2.22 10.62 22.40 0.24 -1.98 16 20 C -0.11 -3.30 7.18 24.04 0.17 -3.13 16 21 C 0.58 15.05 8.30 69.97 0.58 15.63 16 22 O -0.52 -14.84 17.65 19.43 0.34 -14.50 16 23 O -0.50 -10.15 13.44 -56.75 -0.76 -10.92 16 24 O -0.15 -4.93 8.19 -4.89 -0.04 -4.97 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 1.22 6.58 -2.39 -0.02 1.21 16 27 H 0.06 3.40 5.95 -2.39 -0.01 3.39 16 28 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 29 H 0.03 0.92 6.31 -2.39 -0.02 0.91 16 30 H 0.06 2.32 6.15 -2.39 -0.01 2.30 16 31 H 0.07 2.47 5.60 -2.39 -0.01 2.45 16 32 H 0.06 2.00 6.77 -2.39 -0.02 1.98 16 33 H 0.06 1.86 6.67 -2.39 -0.02 1.85 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.44 3.76 9.11 -74.06 -0.67 3.09 16 Total: -1.00 -62.49 304.83 2.75 -59.74 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.43 Total: 14.34 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.49 Total: -10.76 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -3.74 Total: -76.71 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.46 Total: -30.39 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -62.49 2.75 -59.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091782513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.075 kcal (2) G-P(sol) polarization free energy of solvation -62.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds