Wall clock time and date at job start Mon Mar 30 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47176 * 300.00337 * 3 2 1 6 6 H 1.48507 * 109.46950 * 59.99748 * 3 2 1 7 7 C 1.37879 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46930 * 184.65403 * 9 7 2 11 11 C 1.46896 * 111.00028 * 162.84935 * 10 9 7 12 12 C 1.50693 * 109.47274 * 189.99582 * 11 10 9 13 13 C 1.38260 * 119.96328 * 90.00127 * 12 11 10 14 14 C 1.38211 * 120.07237 * 180.02562 * 13 12 11 15 15 C 1.38415 * 119.99935 * 0.22698 * 14 13 12 16 16 F 1.35097 * 120.03632 * 179.72216 * 15 14 13 17 17 C 1.38645 * 119.92901 * 359.50060 * 15 14 13 18 18 F 1.35099 * 120.04120 * 180.23043 * 17 15 14 19 19 C 1.38209 * 119.97054 * 270.02548 * 12 11 10 20 20 C 1.46901 * 110.99757 * 286.80149 * 10 9 7 21 21 C 1.53000 * 117.50066 * 3.47627 * 20 10 9 22 22 C 1.53003 * 60.00265 * 252.50925 * 21 20 10 23 23 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47544 * 64.65169 * 9 7 2 25 25 H 1.08999 * 109.47249 * 304.64999 * 9 7 2 26 26 H 1.09007 * 109.47133 * 69.99681 * 11 10 9 27 27 H 1.09002 * 109.47034 * 309.99934 * 11 10 9 28 28 H 1.07998 * 119.96450 * 0.02562 * 13 12 11 29 29 H 1.08005 * 120.00485 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.99551 * 359.94913 * 19 12 11 31 31 H 1.08997 * 115.55025 * 149.18433 * 20 10 9 32 32 H 1.09007 * 117.49602 * 0.02562 * 21 20 10 33 33 H 1.08998 * 117.50247 * 145.01838 * 21 20 10 34 34 H 1.08998 * 117.49845 * 252.51296 * 22 21 20 35 35 H 1.09003 * 117.51582 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2017 -3.6134 0.1135 11 6 1.5190 -4.8485 0.5214 12 6 2.5435 -5.8992 0.8639 13 6 3.0162 -6.0066 2.1588 14 6 3.9563 -6.9691 2.4752 15 6 4.4290 -7.8237 1.4944 16 9 5.3521 -8.7610 1.8017 17 6 3.9509 -7.7197 0.1972 18 9 4.4073 -8.5557 -0.7609 19 6 3.0101 -6.7541 -0.1167 20 6 2.9360 -3.8084 -1.1437 21 6 2.6683 -2.8185 -2.2791 22 6 2.1335 -4.2491 -2.3696 23 1 -0.4849 0.8400 -0.0004 24 1 0.6887 -2.5941 -0.9283 25 1 0.5630 -2.5215 0.8457 26 1 0.8928 -5.2047 -0.2966 27 1 0.8975 -4.6488 1.3944 28 1 2.6505 -5.3377 2.9237 29 1 4.3251 -7.0518 3.4870 30 1 2.6398 -6.6694 -1.1277 31 1 3.9502 -4.1944 -1.0408 32 1 1.9475 -2.0222 -2.0930 33 1 3.5064 -2.5527 -2.9234 34 1 2.6198 -4.9246 -3.0733 35 1 1.0606 -4.3947 -2.2431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110363645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:43 Heat of formation + Delta-G solvation = -29.340026 kcal Electronic energy + Delta-G solvation = -20028.587157 eV Core-core repulsion = 16663.690588 eV Total energy + Delta-G solvation = -3364.896569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.41383 -48.49315 -39.41078 -37.84606 -33.33895 -32.78414 -30.91857 -30.33926 -27.27094 -24.81380 -23.22073 -22.78923 -21.87611 -21.23691 -18.98397 -17.81808 -17.06698 -16.88446 -16.27607 -16.24371 -15.91494 -14.92810 -14.85264 -14.49539 -14.36665 -14.12686 -13.82954 -13.63429 -13.00254 -12.52671 -12.15915 -11.91319 -11.85716 -11.51421 -11.28093 -11.05068 -10.85922 -10.65606 -10.32854 -10.02218 -9.82562 -9.42131 -9.29057 -9.01943 -8.57423 -8.47422 -7.35580 -6.08471 -4.08111 0.98098 1.06152 3.27893 3.36279 3.39719 3.43053 3.83037 4.35252 4.39203 4.48109 4.59021 4.78416 4.92434 5.06147 5.21990 5.27534 5.55803 5.60562 5.67888 5.70800 5.79726 5.86295 5.99595 6.05934 6.11274 6.15020 6.53381 6.56520 6.62732 6.81120 7.02586 7.11046 7.29856 7.75486 7.99305 8.08435 8.42829 8.99871 9.54776 11.01809 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.004670 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.261299 B = 5994.177878 C = 6340.737872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.495 4.495 8 H 0.065 0.935 9 C 0.186 3.814 10 N -0.499 5.499 11 C 0.088 3.912 12 C -0.038 4.038 13 C -0.081 4.081 14 C -0.128 4.128 15 C 0.054 3.946 16 F -0.136 7.136 17 C 0.062 3.938 18 F -0.134 7.134 19 C -0.118 4.118 20 C 0.035 3.965 21 C -0.169 4.169 22 C -0.233 4.233 23 H 0.261 0.739 24 H -0.002 1.002 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -13.038 1.401 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.534 4.534 8 H 0.084 0.916 9 C 0.062 3.938 10 N -0.221 5.221 11 C -0.039 4.039 12 C -0.039 4.039 13 C -0.099 4.099 14 C -0.146 4.146 15 C 0.033 3.967 16 F -0.115 7.115 17 C 0.042 3.958 18 F -0.113 7.113 19 C -0.137 4.137 20 C -0.075 4.075 21 C -0.206 4.206 22 C -0.273 4.273 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.874 -12.842 1.762 13.848 hybrid contribution 0.159 0.385 -0.816 0.916 sum 5.033 -12.457 0.946 13.468 Atomic orbital electron populations 1.69959 1.06021 1.26741 1.51189 1.24966 0.94822 0.99236 0.95624 0.86474 0.80194 0.83500 0.77497 1.19616 1.21155 1.21083 1.21132 0.93696 0.89397 1.49186 0.91648 1.19914 0.90257 0.87375 0.96302 1.62268 1.29222 1.03049 1.27600 1.21099 0.92692 0.89372 1.00739 1.19907 0.96908 0.94719 0.92409 1.21058 0.95441 0.96554 0.96879 1.21059 0.98837 0.95665 0.99069 1.17668 0.93609 0.92491 0.92892 1.91493 1.63511 1.62942 1.93513 1.17654 0.99618 0.93771 0.84747 1.91500 1.87829 1.69641 1.62337 1.21062 0.96863 0.94405 1.01408 1.22553 0.97328 1.03607 0.83995 1.23531 1.03925 0.93538 0.99610 1.23371 1.00204 0.99907 1.03775 0.92953 0.98387 0.94920 0.94041 0.89687 0.83959 0.83965 0.83922 0.87880 0.84768 0.90084 0.90032 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.50 -12.93 6.85 -34.44 -0.24 -13.17 16 8 H 0.07 1.74 7.80 -52.49 -0.41 1.33 16 9 C 0.19 4.41 4.27 -4.97 -0.02 4.39 16 10 N -0.50 -9.76 4.66 -229.51 -1.07 -10.83 16 11 C 0.09 1.41 5.01 -4.98 -0.02 1.38 16 12 C -0.04 -0.53 5.03 -104.63 -0.53 -1.06 16 13 C -0.08 -1.00 9.70 -39.58 -0.38 -1.39 16 14 C -0.13 -1.49 10.02 -39.53 -0.40 -1.88 16 15 C 0.05 0.71 7.31 -39.37 -0.29 0.43 16 16 F -0.14 -1.87 17.18 2.25 0.04 -1.84 16 17 C 0.06 0.86 7.31 -39.37 -0.29 0.57 16 18 F -0.13 -1.94 17.18 2.25 0.04 -1.91 16 19 C -0.12 -1.59 8.81 -39.53 -0.35 -1.94 16 20 C 0.03 0.63 4.77 -67.71 -0.32 0.31 16 21 C -0.17 -3.19 8.87 -26.73 -0.24 -3.43 16 22 C -0.23 -3.82 8.69 -26.73 -0.23 -4.05 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.00 -0.04 6.03 -51.93 -0.31 -0.35 16 25 H 0.03 0.84 7.78 -51.93 -0.40 0.43 16 26 H 0.04 0.65 6.80 -51.92 -0.35 0.29 16 27 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 28 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.14 1.83 7.44 -52.49 -0.39 1.44 16 31 H 0.10 1.80 8.12 -51.93 -0.42 1.38 16 32 H 0.13 3.02 4.91 -51.93 -0.25 2.77 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.46 7.14 -51.93 -0.37 1.09 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -27.58 299.79 -8.31 -35.89 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.15 Total: 1.39 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.40 Total: -18.47 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.33 Total: -35.45 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.58 -8.31 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110363645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.549 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds