Wall clock time and date at job start Mon Mar 30 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47176 * 300.00337 * 3 2 1 6 6 H 1.48507 * 109.46950 * 59.99748 * 3 2 1 7 7 C 1.37879 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46930 * 184.65403 * 9 7 2 11 11 C 1.46896 * 111.00028 * 162.84935 * 10 9 7 12 12 C 1.50693 * 109.47274 * 189.99582 * 11 10 9 13 13 C 1.38260 * 119.96328 * 90.00127 * 12 11 10 14 14 C 1.38211 * 120.07237 * 180.02562 * 13 12 11 15 15 C 1.38415 * 119.99935 * 0.22698 * 14 13 12 16 16 F 1.35097 * 120.03632 * 179.72216 * 15 14 13 17 17 C 1.38645 * 119.92901 * 359.50060 * 15 14 13 18 18 F 1.35099 * 120.04120 * 180.23043 * 17 15 14 19 19 C 1.38209 * 119.97054 * 270.02548 * 12 11 10 20 20 C 1.46901 * 110.99757 * 286.80149 * 10 9 7 21 21 C 1.53000 * 117.50066 * 3.47627 * 20 10 9 22 22 C 1.53003 * 60.00265 * 252.50925 * 21 20 10 23 23 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47544 * 64.65169 * 9 7 2 25 25 H 1.08999 * 109.47249 * 304.64999 * 9 7 2 26 26 H 1.09007 * 109.47133 * 69.99681 * 11 10 9 27 27 H 1.09002 * 109.47034 * 309.99934 * 11 10 9 28 28 H 1.07998 * 119.96450 * 0.02562 * 13 12 11 29 29 H 1.08005 * 120.00485 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.99551 * 359.94913 * 19 12 11 31 31 H 1.08997 * 115.55025 * 149.18433 * 20 10 9 32 32 H 1.09007 * 117.49602 * 0.02562 * 21 20 10 33 33 H 1.08998 * 117.50247 * 145.01838 * 21 20 10 34 34 H 1.08998 * 117.49845 * 252.51296 * 22 21 20 35 35 H 1.09003 * 117.51582 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2017 -3.6134 0.1135 11 6 1.5190 -4.8485 0.5214 12 6 2.5435 -5.8992 0.8639 13 6 3.0162 -6.0066 2.1588 14 6 3.9563 -6.9691 2.4752 15 6 4.4290 -7.8237 1.4944 16 9 5.3521 -8.7610 1.8017 17 6 3.9509 -7.7197 0.1972 18 9 4.4073 -8.5557 -0.7609 19 6 3.0101 -6.7541 -0.1167 20 6 2.9360 -3.8084 -1.1437 21 6 2.6683 -2.8185 -2.2791 22 6 2.1335 -4.2491 -2.3696 23 1 -0.4849 0.8400 -0.0004 24 1 0.6887 -2.5941 -0.9283 25 1 0.5630 -2.5215 0.8457 26 1 0.8928 -5.2047 -0.2966 27 1 0.8975 -4.6488 1.3944 28 1 2.6505 -5.3377 2.9237 29 1 4.3251 -7.0518 3.4870 30 1 2.6398 -6.6694 -1.1277 31 1 3.9502 -4.1944 -1.0408 32 1 1.9475 -2.0222 -2.0930 33 1 3.5064 -2.5527 -2.9234 34 1 2.6198 -4.9246 -3.0733 35 1 1.0606 -4.3947 -2.2431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110363645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:43 Heat of formation + Delta-G solvation = -43.776405 kcal Electronic energy + Delta-G solvation = -20029.213165 eV Core-core repulsion = 16663.690588 eV Total energy + Delta-G solvation = -3365.522577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.47593 -49.55941 -40.63705 -39.17316 -34.99790 -34.45893 -32.11231 -31.55946 -28.99461 -26.20415 -24.65860 -24.17234 -23.19402 -22.52842 -20.48302 -18.88532 -18.40359 -18.14870 -17.85151 -17.42041 -17.26266 -16.66323 -15.99225 -15.75277 -15.56271 -15.43110 -15.19416 -14.80633 -14.29464 -14.15832 -13.54320 -13.33923 -13.15878 -13.03150 -12.67110 -12.61767 -12.42990 -12.22258 -11.92959 -11.73934 -11.38294 -11.25661 -10.83500 -10.56028 -10.02234 -9.63599 -8.93189 -8.13733 -6.19301 -0.07472 0.06781 1.42586 1.45403 1.56975 2.34796 2.46707 2.81084 3.05272 3.18131 3.30194 3.42430 3.61330 3.72445 4.03260 4.15476 4.17085 4.21953 4.26656 4.50518 4.71667 4.78910 4.81754 4.91195 4.95476 5.07975 5.09656 5.11321 5.26080 5.32362 5.51589 5.61797 5.73430 5.79302 6.11906 6.40193 6.62796 6.94199 7.47372 8.96340 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.004670 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.261299 B = 5994.177878 C = 6340.737872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.204 3.796 10 N -0.507 5.507 11 C 0.091 3.909 12 C -0.047 4.047 13 C -0.078 4.078 14 C -0.115 4.115 15 C 0.048 3.952 16 F -0.139 7.139 17 C 0.051 3.949 18 F -0.141 7.141 19 C -0.114 4.114 20 C 0.032 3.968 21 C -0.188 4.188 22 C -0.205 4.205 23 H 0.262 0.738 24 H -0.022 1.022 25 H 0.008 0.992 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -13.794 1.735 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.230 5.230 11 C -0.036 4.036 12 C -0.048 4.048 13 C -0.097 4.097 14 C -0.133 4.133 15 C 0.028 3.972 16 F -0.118 7.118 17 C 0.031 3.969 18 F -0.119 7.119 19 C -0.134 4.134 20 C -0.078 4.078 21 C -0.225 4.225 22 C -0.244 4.244 23 H 0.071 0.929 24 H -0.004 1.004 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.194 -13.617 2.096 15.106 hybrid contribution -0.238 0.545 -0.911 1.088 sum 5.956 -13.071 1.185 14.413 Atomic orbital electron populations 1.70065 1.07413 1.27481 1.52600 1.25707 0.95521 1.02458 0.95531 0.85515 0.79119 0.79666 0.77426 1.19054 1.20869 1.20822 1.21327 0.93343 0.90628 1.48146 0.92393 1.19515 0.90131 0.88473 0.94082 1.62125 1.28471 1.03678 1.28713 1.21078 0.93311 0.88406 1.00788 1.19706 0.97143 0.94612 0.93352 1.21237 0.95161 0.96724 0.96553 1.21301 0.97729 0.94285 1.00020 1.17879 0.93578 0.92678 0.93081 1.91487 1.63667 1.63148 1.93512 1.17756 1.00108 0.94047 0.84983 1.91483 1.87949 1.69854 1.62637 1.21036 0.96627 0.94138 1.01571 1.22603 0.97960 1.03568 0.83630 1.23383 1.04113 0.93780 1.01234 1.23355 0.99759 0.98376 1.02928 0.92946 1.00401 0.97398 0.93743 0.89654 0.82718 0.81075 0.83415 0.86596 0.88759 0.88351 0.86950 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.29 21.45 0.28 -53.47 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.50 -26.24 6.85 25.60 0.18 -26.06 16 8 H 0.06 3.10 7.80 -2.92 -0.02 3.08 16 9 C 0.20 9.88 4.27 85.56 0.37 10.25 16 10 N -0.51 -19.67 4.66 -880.05 -4.10 -23.77 16 11 C 0.09 2.83 5.01 85.56 0.43 3.26 16 12 C -0.05 -1.23 5.03 -19.87 -0.10 -1.33 16 13 C -0.08 -1.76 9.70 22.27 0.22 -1.54 16 14 C -0.11 -2.33 10.02 22.31 0.22 -2.11 16 15 C 0.05 1.17 7.31 22.41 0.16 1.33 16 16 F -0.14 -3.55 17.18 44.97 0.77 -2.78 16 17 C 0.05 1.32 7.31 22.41 0.16 1.48 16 18 F -0.14 -3.85 17.18 44.97 0.77 -3.07 16 19 C -0.11 -2.86 8.81 22.31 0.20 -2.67 16 20 C 0.03 1.10 4.77 44.92 0.21 1.32 16 21 C -0.19 -7.01 8.87 30.60 0.27 -6.74 16 22 C -0.21 -6.39 8.69 30.60 0.27 -6.12 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H -0.02 -1.12 6.03 -2.39 -0.01 -1.14 16 25 H 0.01 0.42 7.78 -2.39 -0.02 0.40 16 26 H 0.04 1.35 6.80 -2.38 -0.02 1.33 16 27 H 0.09 2.61 7.79 -2.39 -0.02 2.59 16 28 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 3.48 7.44 -2.91 -0.02 3.46 16 31 H 0.12 3.80 8.12 -2.39 -0.02 3.78 16 32 H 0.09 4.36 4.91 -2.38 -0.01 4.34 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.08 2.57 7.14 -2.39 -0.02 2.56 16 Total: -1.00 -59.15 299.79 3.90 -55.25 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.10 Total: 10.92 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.05 Total: -28.17 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -3.82 Total: -77.24 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.55 Total: -5.86 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -59.15 3.90 -55.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110363645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.473 kcal (2) G-P(sol) polarization free energy of solvation -59.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds