Wall clock time and date at job start Mon Mar 30 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38300 * 119.95593 * 2 1 4 4 C 1.38258 * 120.16781 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.08676 * 0.04496 * 4 3 2 6 6 F 1.35104 * 120.04055 * 179.97438 * 5 4 3 7 7 C 1.38973 * 119.91475 * 359.97438 * 5 4 3 8 8 N 1.40021 * 120.08477 * 179.97438 * 7 5 4 9 9 C 1.46904 * 111.00120 * 59.99657 * 8 7 5 10 10 C 1.52998 * 109.47206 * 177.63335 * 9 8 7 11 11 C 1.50693 * 115.55186 * 65.10275 * 10 9 8 12 12 H 1.08005 * 120.00011 * 264.68670 * 11 10 9 13 13 C 1.37874 * 120.00411 * 84.69130 * 11 10 9 14 14 N 1.31515 * 119.99801 * 350.80646 * 13 11 10 15 15 Si 1.86795 * 120.00423 * 170.80478 * 13 11 10 16 16 H 1.48504 * 109.47321 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47275 * 119.99702 * 15 13 11 18 18 H 1.48496 * 109.47682 * 239.99967 * 15 13 11 19 19 C 1.53002 * 117.49388 * 279.42806 * 10 9 8 20 20 C 1.53008 * 117.49595 * 210.77317 * 10 9 8 21 21 C 1.38309 * 119.95720 * 180.29010 * 2 1 3 22 22 F 1.35103 * 120.04470 * 0.02562 * 21 2 1 23 23 H 1.08992 * 109.47706 * 89.99574 * 1 2 3 24 24 H 1.09003 * 109.46532 * 209.99840 * 1 2 3 25 25 H 1.09004 * 109.46617 * 329.98809 * 1 2 3 26 26 H 1.07998 * 119.91233 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.95004 * 180.02562 * 4 3 2 28 28 H 1.00896 * 110.99980 * 296.04574 * 8 7 5 29 29 H 1.08994 * 109.47417 * 57.62422 * 9 8 7 30 30 H 1.09011 * 109.47165 * 297.62847 * 9 8 7 31 31 H 0.96998 * 120.00444 * 185.02134 * 14 13 11 32 32 H 1.08998 * 117.50001 * 0.02562 * 19 10 9 33 33 H 1.09001 * 117.49457 * 145.02079 * 19 10 9 34 34 H 1.08997 * 117.49810 * 214.97767 * 20 10 9 35 35 H 1.08998 * 117.49840 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1982 0.0000 4 6 3.5802 1.2034 0.0005 5 6 4.2781 0.0089 0.0001 6 9 5.6292 0.0150 0.0001 7 6 3.5878 -1.1973 -0.0003 8 7 4.2906 -2.4083 -0.0012 9 6 5.1485 -2.5201 1.1861 10 6 5.8535 -3.8779 1.1798 11 6 6.8303 -4.0979 0.0537 12 1 6.5138 -4.6087 -0.8438 13 6 8.1283 -3.6473 0.1689 14 7 8.4681 -2.8715 1.1750 15 14 9.4041 -4.1388 -1.1038 16 1 8.7727 -5.0107 -2.1268 17 1 9.9461 -2.9205 -1.7575 18 1 10.5082 -4.8765 -0.4389 19 6 5.0584 -5.0889 1.6723 20 6 6.1828 -4.5091 2.5342 21 6 2.1977 -1.1983 -0.0061 22 9 1.5222 -2.3683 -0.0125 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5141 26 1 1.6555 2.1323 -0.0004 27 1 4.1159 2.1411 0.0010 28 1 4.8295 -2.5129 -0.8478 29 1 4.5383 -2.4315 2.0849 30 1 5.8931 -1.7240 1.1726 31 1 9.3611 -2.4952 1.2173 32 1 4.0331 -4.9182 2.0002 33 1 5.2423 -6.0448 1.1818 34 1 7.1058 -5.0838 2.6105 35 1 5.8975 -3.9568 3.4295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122045274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:06 Heat of formation + Delta-G solvation = -42.247237 kcal Electronic energy + Delta-G solvation = -20397.972289 eV Core-core repulsion = 17032.516021 eV Total energy + Delta-G solvation = -3365.456267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.64016 -48.56472 -38.99021 -36.93263 -34.63496 -31.95052 -31.86391 -29.28650 -26.57884 -25.68225 -24.57069 -22.24765 -21.26099 -20.89634 -19.14669 -17.84043 -17.17670 -16.28145 -15.88881 -15.51004 -15.17333 -14.95398 -14.61856 -14.52993 -14.09713 -13.94533 -13.54625 -13.36744 -12.88318 -12.63429 -12.20291 -11.88289 -11.71171 -11.42654 -11.32915 -11.26202 -10.98974 -10.85953 -10.42751 -10.13704 -9.49751 -8.75516 -8.63561 -8.45399 -8.41318 -8.12196 -7.78278 -6.02620 -4.08750 1.08370 1.15652 3.27888 3.36954 3.41013 3.45156 4.07109 4.40141 4.49431 4.61687 4.71351 4.97344 5.08183 5.25423 5.31805 5.49544 5.53456 5.69758 5.91466 5.98269 6.07911 6.12976 6.22622 6.27419 6.45379 6.56368 6.71089 6.80568 6.89318 6.98773 7.16548 7.50450 7.54480 7.80971 7.88881 8.06222 8.48618 8.94279 9.57205 11.05174 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.006092 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.845992 B = 4595.269557 C = 5201.205125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.080 4.080 4 C -0.160 4.160 5 C 0.087 3.913 6 F -0.119 7.119 7 C 0.045 3.955 8 N -0.633 5.633 9 C 0.101 3.899 10 C 0.049 3.951 11 C -0.498 4.498 12 H 0.061 0.939 13 C 0.073 3.927 14 N -0.876 5.876 15 Si 0.887 3.113 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.199 4.199 20 C -0.161 4.161 21 C 0.141 3.859 22 F -0.120 7.120 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.365 0.635 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 8.735 -1.769 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.098 4.098 4 C -0.179 4.179 5 C 0.065 3.935 6 F -0.097 7.097 7 C -0.054 4.054 8 N -0.267 5.267 9 C -0.026 4.026 10 C 0.048 3.952 11 C -0.536 4.536 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.512 5.512 15 Si 0.714 3.286 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.237 4.237 20 C -0.199 4.199 21 C 0.120 3.880 22 F -0.098 7.098 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.191 0.809 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.870 8.329 -1.386 15.392 hybrid contribution 1.780 0.232 -0.761 1.950 sum -11.090 8.561 -2.147 14.173 Atomic orbital electron populations 1.20668 0.89908 1.03245 1.02682 1.19887 0.97148 0.91614 1.05049 1.20623 0.92811 0.97151 0.99190 1.21129 0.94833 0.97179 1.04789 1.18499 0.78026 0.94529 1.02470 1.91591 1.27677 1.97136 1.93299 1.19100 0.92599 0.90047 1.03636 1.58096 1.33750 1.26640 1.08186 1.21717 0.92422 1.00180 0.88261 1.18700 0.95091 0.87517 0.93844 1.20469 0.93463 1.38345 1.01323 0.92053 1.24998 0.98141 0.94710 0.95208 1.69994 1.20018 1.30865 1.30307 0.86626 0.81800 0.78511 0.81632 1.19637 1.21128 1.20960 1.22893 0.94478 0.99664 1.06643 1.22545 0.98032 1.04713 0.94608 1.17144 0.87886 0.81188 1.01788 1.91493 1.79246 1.45779 1.93290 0.90917 0.91129 0.91079 0.84507 0.84563 0.80886 0.94325 0.92420 0.93065 0.91589 0.90705 0.90200 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.83 36.01 0.35 -0.66 16 2 C -0.14 -1.70 5.88 -104.57 -0.62 -2.32 16 3 C -0.08 -0.89 9.69 -39.55 -0.38 -1.27 16 4 C -0.16 -2.11 10.02 -39.53 -0.40 -2.50 16 5 C 0.09 1.50 7.00 -39.27 -0.27 1.22 16 6 F -0.12 -2.38 15.10 2.25 0.03 -2.35 16 7 C 0.04 0.82 5.61 -83.56 -0.47 0.35 16 8 N -0.63 -13.31 6.23 -58.22 -0.36 -13.67 16 9 C 0.10 2.35 5.18 -3.82 -0.02 2.33 16 10 C 0.05 1.23 1.54 -155.66 -0.24 0.99 16 11 C -0.50 -13.46 8.25 -34.44 -0.28 -13.75 16 12 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 13 C 0.07 1.99 5.37 -17.82 -0.10 1.90 16 14 N -0.88 -24.79 13.03 55.43 0.72 -24.07 16 15 Si 0.89 21.12 29.55 -169.99 -5.02 16.09 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.20 -4.57 9.96 -26.69 -0.27 -4.84 16 20 C -0.16 -3.89 9.54 -26.69 -0.25 -4.15 16 21 C 0.14 2.27 7.25 -39.27 -0.28 1.98 16 22 F -0.12 -2.06 16.29 2.25 0.04 -2.02 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.70 7.64 -51.93 -0.40 0.30 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.37 7.94 8.25 -39.29 -0.32 7.61 16 29 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.06 1.47 6.13 -51.92 -0.32 1.15 16 31 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -28.96 307.81 -7.57 -36.52 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.38 Total: 5.57 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -3.23 Total: -20.72 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.36 Total: -37.74 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.96 -7.57 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122045274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.724 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds