Wall clock time and date at job start Mon Mar 30 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38300 * 119.95593 * 2 1 4 4 C 1.38258 * 120.16781 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.08676 * 0.04496 * 4 3 2 6 6 F 1.35104 * 120.04055 * 179.97438 * 5 4 3 7 7 C 1.38973 * 119.91475 * 359.97438 * 5 4 3 8 8 N 1.40021 * 120.08477 * 179.97438 * 7 5 4 9 9 C 1.46904 * 111.00120 * 59.99657 * 8 7 5 10 10 C 1.52998 * 109.47206 * 177.63335 * 9 8 7 11 11 C 1.50693 * 115.55186 * 65.10275 * 10 9 8 12 12 H 1.08005 * 120.00011 * 264.68670 * 11 10 9 13 13 C 1.37874 * 120.00411 * 84.69130 * 11 10 9 14 14 N 1.31515 * 119.99801 * 350.80646 * 13 11 10 15 15 Si 1.86795 * 120.00423 * 170.80478 * 13 11 10 16 16 H 1.48504 * 109.47321 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47275 * 119.99702 * 15 13 11 18 18 H 1.48496 * 109.47682 * 239.99967 * 15 13 11 19 19 C 1.53002 * 117.49388 * 279.42806 * 10 9 8 20 20 C 1.53008 * 117.49595 * 210.77317 * 10 9 8 21 21 C 1.38309 * 119.95720 * 180.29010 * 2 1 3 22 22 F 1.35103 * 120.04470 * 0.02562 * 21 2 1 23 23 H 1.08992 * 109.47706 * 89.99574 * 1 2 3 24 24 H 1.09003 * 109.46532 * 209.99840 * 1 2 3 25 25 H 1.09004 * 109.46617 * 329.98809 * 1 2 3 26 26 H 1.07998 * 119.91233 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.95004 * 180.02562 * 4 3 2 28 28 H 1.00896 * 110.99980 * 296.04574 * 8 7 5 29 29 H 1.08994 * 109.47417 * 57.62422 * 9 8 7 30 30 H 1.09011 * 109.47165 * 297.62847 * 9 8 7 31 31 H 0.96998 * 120.00444 * 185.02134 * 14 13 11 32 32 H 1.08998 * 117.50001 * 0.02562 * 19 10 9 33 33 H 1.09001 * 117.49457 * 145.02079 * 19 10 9 34 34 H 1.08997 * 117.49810 * 214.97767 * 20 10 9 35 35 H 1.08998 * 117.49840 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1982 0.0000 4 6 3.5802 1.2034 0.0005 5 6 4.2781 0.0089 0.0001 6 9 5.6292 0.0150 0.0001 7 6 3.5878 -1.1973 -0.0003 8 7 4.2906 -2.4083 -0.0012 9 6 5.1485 -2.5201 1.1861 10 6 5.8535 -3.8779 1.1798 11 6 6.8303 -4.0979 0.0537 12 1 6.5138 -4.6087 -0.8438 13 6 8.1283 -3.6473 0.1689 14 7 8.4681 -2.8715 1.1750 15 14 9.4041 -4.1388 -1.1038 16 1 8.7727 -5.0107 -2.1268 17 1 9.9461 -2.9205 -1.7575 18 1 10.5082 -4.8765 -0.4389 19 6 5.0584 -5.0889 1.6723 20 6 6.1828 -4.5091 2.5342 21 6 2.1977 -1.1983 -0.0061 22 9 1.5222 -2.3683 -0.0125 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5141 26 1 1.6555 2.1323 -0.0004 27 1 4.1159 2.1411 0.0010 28 1 4.8295 -2.5129 -0.8478 29 1 4.5383 -2.4315 2.0849 30 1 5.8931 -1.7240 1.1726 31 1 9.3611 -2.4952 1.2173 32 1 4.0331 -4.9182 2.0002 33 1 5.2423 -6.0448 1.1818 34 1 7.1058 -5.0838 2.6105 35 1 5.8975 -3.9568 3.4295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122045274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:06 Heat of formation + Delta-G solvation = -58.113120 kcal Electronic energy + Delta-G solvation = -20398.660285 eV Core-core repulsion = 17032.516021 eV Total energy + Delta-G solvation = -3366.144264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.03826 -49.82567 -40.19856 -38.70988 -36.14862 -34.01340 -32.93047 -30.61603 -27.74917 -27.48784 -26.31728 -23.43510 -22.91311 -22.34944 -21.11527 -19.08913 -18.46973 -18.05512 -17.41563 -16.89721 -16.64211 -16.43851 -16.31909 -15.92420 -15.72151 -15.22627 -15.12996 -14.52035 -14.16583 -13.89616 -13.55618 -13.49939 -13.16042 -12.99007 -12.87597 -12.62793 -12.54835 -12.40378 -12.30182 -12.05977 -11.43270 -10.76515 -10.48745 -10.18115 -9.69993 -9.52608 -9.52026 -8.11896 -6.23400 -0.06188 0.01254 1.37127 1.40668 1.51211 2.34377 2.40379 2.87836 3.01984 3.15833 3.49877 3.60511 3.76731 3.88059 4.11710 4.21950 4.35642 4.53574 4.64022 4.75409 4.82063 4.84606 4.92665 4.98904 5.01244 5.02623 5.07907 5.21664 5.25420 5.27689 5.59324 5.60060 5.75153 5.75947 6.09054 6.41041 6.44220 6.83714 7.44857 8.95657 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.006092 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.845992 B = 4595.269557 C = 5201.205125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.058 4.058 4 C -0.147 4.147 5 C 0.054 3.946 6 F -0.146 7.146 7 C 0.009 3.991 8 N -0.634 5.634 9 C 0.120 3.880 10 C 0.024 3.976 11 C -0.508 4.508 12 H 0.053 0.947 13 C 0.029 3.971 14 N -0.904 5.904 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.178 4.178 20 C -0.164 4.164 21 C 0.120 3.880 22 F -0.132 7.132 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.190 0.810 27 H 0.163 0.837 28 H 0.353 0.647 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 10.505 -2.279 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.075 4.075 4 C -0.167 4.167 5 C 0.033 3.967 6 F -0.125 7.125 7 C -0.088 4.088 8 N -0.265 5.265 9 C -0.008 4.008 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.071 0.929 13 C -0.172 4.172 14 N -0.541 5.541 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.215 4.215 20 C -0.202 4.202 21 C 0.100 3.900 22 F -0.111 7.111 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.207 0.793 27 H 0.181 0.819 28 H 0.177 0.823 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.970 10.099 -1.896 18.157 hybrid contribution 2.290 -0.231 -0.610 2.382 sum -12.679 9.868 -2.506 16.261 Atomic orbital electron populations 1.20804 0.87118 1.04505 1.04053 1.20366 0.99050 0.90508 1.02326 1.21220 0.91882 0.98563 0.95860 1.21502 0.95878 0.96519 1.02764 1.18812 0.77106 0.95835 1.04962 1.91517 1.29777 1.97302 1.93867 1.19255 0.93428 0.89402 1.06765 1.57981 1.32682 1.29165 1.06693 1.21341 0.91852 0.98182 0.89377 1.18857 0.95968 0.89110 0.93720 1.20645 0.94261 1.38034 1.01607 0.92909 1.25657 0.99816 0.94628 0.97068 1.70101 1.20313 1.31828 1.31889 0.85672 0.79356 0.78140 0.79487 1.19142 1.20848 1.20705 1.22856 0.94743 0.98811 1.05135 1.22473 0.97917 1.04936 0.94906 1.17443 0.87206 0.82166 1.03219 1.91455 1.79245 1.46768 1.93589 0.89326 0.91903 0.87854 0.79334 0.81903 0.82283 0.94449 0.95300 0.93146 0.90035 0.90484 0.91965 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.83 71.24 0.70 -0.87 16 2 C -0.12 -2.65 5.88 -19.83 -0.12 -2.77 16 3 C -0.06 -1.02 9.69 22.29 0.22 -0.81 16 4 C -0.15 -3.51 10.02 22.30 0.22 -3.28 16 5 C 0.05 1.89 7.00 22.47 0.16 2.04 16 6 F -0.15 -6.14 15.10 44.97 0.68 -5.46 16 7 C 0.01 0.35 5.61 38.19 0.21 0.57 16 8 N -0.63 -27.71 6.23 -338.09 -2.11 -29.82 16 9 C 0.12 5.82 5.18 86.30 0.45 6.27 16 10 C 0.02 1.24 1.54 -52.93 -0.08 1.16 16 11 C -0.51 -28.18 8.25 25.60 0.21 -27.97 16 12 H 0.05 2.95 7.83 -2.91 -0.02 2.92 16 13 C 0.03 1.62 5.37 84.65 0.45 2.08 16 14 N -0.90 -52.61 13.03 21.45 0.28 -52.33 16 15 Si 0.95 44.19 29.55 68.60 2.03 46.22 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 C -0.18 -8.21 9.96 30.62 0.30 -7.90 16 20 C -0.16 -8.10 9.54 30.62 0.29 -7.81 16 21 C 0.12 3.78 7.25 22.47 0.16 3.95 16 22 F -0.13 -4.51 16.29 44.97 0.73 -3.78 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.05 7.64 -2.39 -0.02 1.03 16 25 H 0.10 0.88 8.08 -2.38 -0.02 0.86 16 26 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 27 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.35 16.28 8.25 -89.70 -0.74 15.54 16 29 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 30 H 0.03 1.55 6.13 -2.38 -0.01 1.54 16 31 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 32 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -65.41 307.81 5.17 -60.24 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.37 Total: 20.28 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.19 Total: -35.34 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.83 Total: -82.15 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 1.41 Total: -9.24 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.41 5.17 -60.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122045274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.124 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds