Wall clock time and date at job start Mon Mar 30 2020 07:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47460 * 54.67062 * 3 2 1 5 5 N 1.46902 * 109.47216 * 294.66425 * 3 2 1 6 6 C 1.46898 * 110.99993 * 151.57015 * 5 3 2 7 7 H 1.09002 * 109.46739 * 328.25195 * 6 5 3 8 8 C 1.53002 * 109.47294 * 88.24847 * 6 5 3 9 9 C 1.50694 * 109.47437 * 208.25463 * 6 5 3 10 10 H 1.07998 * 119.99789 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00429 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99759 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 120.00288 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47214 * 59.99573 * 13 11 9 15 15 H 1.48494 * 109.46945 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46751 * 299.99571 * 13 11 9 17 17 C 1.50703 * 109.46783 * 174.66946 * 3 2 1 18 18 C 1.38261 * 119.99537 * 80.27070 * 17 3 2 19 19 C 1.38222 * 120.02790 * 180.27572 * 18 17 3 20 20 C 1.38237 * 120.00871 * 359.70255 * 19 18 17 21 21 C 1.38332 * 119.99098 * 0.02940 * 20 19 18 22 22 Cl 1.73597 * 120.01348 * 180.02562 * 21 20 19 23 23 C 1.38195 * 119.98956 * 260.00076 * 17 3 2 24 24 H 1.09000 * 109.46932 * 295.31364 * 1 2 3 25 25 H 1.09001 * 109.47439 * 55.30917 * 1 2 3 26 26 H 1.08994 * 109.47382 * 175.31585 * 1 2 3 27 27 H 1.09000 * 109.46436 * 240.00000 * 2 1 3 28 28 H 1.08998 * 109.47053 * 120.00158 * 2 1 3 29 29 H 1.00900 * 110.99983 * 275.52487 * 5 3 2 30 30 H 1.08997 * 109.47353 * 179.97438 * 8 6 5 31 31 H 1.08999 * 109.47225 * 300.00501 * 8 6 5 32 32 H 1.09002 * 109.46679 * 59.99991 * 8 6 5 33 33 H 0.96995 * 119.99989 * 180.02562 * 12 11 9 34 34 H 1.07996 * 119.99109 * 359.97438 * 18 17 3 35 35 H 1.07995 * 119.99984 * 179.72823 * 19 18 17 36 36 H 1.08000 * 120.00498 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00726 * 0.02562 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9832 0.8384 5 7 1.6583 2.0969 -1.2586 6 6 1.4992 3.5452 -1.0719 7 1 1.1447 3.7443 -0.0605 8 6 2.8466 4.2380 -1.2856 9 6 0.4992 4.0734 -2.0678 10 1 0.0291 3.4004 -2.7696 11 6 0.1851 5.4158 -2.0837 12 7 0.7579 6.2353 -1.2294 13 14 -1.0540 6.0705 -3.3188 14 1 -2.3619 5.3985 -3.1115 15 1 -1.2149 7.5346 -3.1298 16 1 -0.5707 5.7989 -4.6963 17 6 3.5412 1.4446 0.1320 18 6 4.3329 1.2067 -0.9763 19 6 5.7098 1.2027 -0.8549 20 6 6.2961 1.4428 0.3738 21 6 5.5047 1.6863 1.4819 22 17 6.2405 1.9885 3.0249 23 6 4.1264 1.6897 1.3597 24 1 -0.3633 0.4394 0.9290 25 1 -0.3634 0.5849 -0.8450 26 1 -0.3634 -1.0242 -0.0839 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.3273 1.8975 -1.9872 30 1 2.7285 5.3128 -1.1475 31 1 3.5699 3.8560 -0.5652 32 1 3.2011 4.0388 -2.2969 33 1 0.5367 7.1796 -1.2404 34 1 3.8753 1.0191 -1.9363 35 1 6.3276 1.0125 -1.7200 36 1 7.3720 1.4393 0.4687 37 1 3.5080 1.8794 2.2245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:24 Heat of formation + Delta-G solvation = -7.908821 kcal Electronic energy + Delta-G solvation = -18359.480684 eV Core-core repulsion = 15547.310122 eV Total energy + Delta-G solvation = -2812.170562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79899 -38.23574 -37.21417 -35.49042 -33.29492 -31.98263 -31.55759 -29.44721 -27.17016 -26.21355 -23.81410 -23.13582 -22.13729 -21.23183 -18.49457 -17.98961 -16.92043 -16.51722 -16.40166 -15.76838 -15.39688 -15.15458 -14.55070 -14.49603 -14.39483 -14.13335 -13.51337 -13.27387 -13.02650 -12.88535 -12.82370 -12.65557 -12.38564 -12.28771 -12.22481 -12.06883 -12.04107 -11.71496 -11.59150 -11.54643 -10.97811 -10.44627 -9.82494 -9.59784 -8.96029 -8.05743 -6.16956 0.20809 0.33056 1.13626 1.44861 1.46156 1.53709 2.46047 2.68242 3.22312 3.63061 3.66999 3.90882 4.12540 4.22371 4.31259 4.44593 4.49562 4.60251 4.73342 4.80557 4.86180 4.96037 4.98288 5.08080 5.17809 5.21440 5.25683 5.34833 5.38182 5.45627 5.57272 5.66994 5.73332 5.86416 5.88497 6.31962 6.68418 6.86834 6.98876 7.52987 8.98933 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.005358 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.905237 B = 5224.783570 C = 5823.792635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C 0.124 3.876 4 H 0.058 0.942 5 N -0.668 5.668 6 C 0.223 3.777 7 H -0.004 1.004 8 C -0.147 4.147 9 C -0.511 4.511 10 H 0.057 0.943 11 C 0.008 3.992 12 N -0.924 5.924 13 Si 0.958 3.042 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.271 1.271 17 C -0.089 4.089 18 C -0.118 4.118 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.040 4.040 22 Cl -0.075 7.075 23 C -0.123 4.123 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.334 0.666 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.259 0.741 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 -12.235 3.308 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C 0.013 3.987 4 H 0.076 0.924 5 N -0.298 5.298 6 C 0.114 3.886 7 H 0.014 0.986 8 C -0.207 4.207 9 C -0.550 4.550 10 H 0.075 0.925 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.196 1.196 17 C -0.091 4.091 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.066 4.066 22 Cl -0.046 7.046 23 C -0.143 4.143 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.178 -12.153 3.559 15.640 hybrid contribution 0.264 1.263 -0.056 1.292 sum 9.442 -10.890 3.504 14.833 Atomic orbital electron populations 1.21616 0.95453 1.01271 1.01447 1.21413 0.96328 0.93380 1.01999 1.20740 0.87904 0.96722 0.93307 0.92414 1.60873 1.51527 1.11478 1.05923 1.18922 0.92147 0.82975 0.94566 0.98616 1.22195 0.97714 1.03178 0.97598 1.21447 1.23242 0.92773 1.17489 0.92508 1.25704 0.98252 0.97335 0.97710 1.70020 1.44343 1.04081 1.37998 0.85616 0.79613 0.76747 0.79638 1.19926 1.21369 1.19602 1.20778 0.97581 0.97520 0.93192 1.21241 0.94343 0.99529 0.98572 1.21390 0.94457 0.98122 0.97737 1.21289 1.00938 1.00610 0.91215 1.21031 0.93053 1.04944 0.87604 1.98349 1.82797 1.94468 1.29029 1.21013 0.93200 1.01723 0.98316 0.94093 0.93127 0.91707 0.91301 0.91222 0.84639 0.92748 0.95842 0.95203 0.93210 0.84747 0.82266 0.83073 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.86 71.98 0.71 -3.33 16 2 C -0.09 -2.57 5.59 30.60 0.17 -2.40 16 3 C 0.12 4.17 2.23 44.17 0.10 4.27 16 4 H 0.06 2.20 7.19 -2.39 -0.02 2.19 16 5 N -0.67 -26.47 5.43 -477.16 -2.59 -29.06 16 6 C 0.22 11.02 2.59 44.17 0.11 11.13 16 7 H 0.00 -0.23 7.33 -2.39 -0.02 -0.25 16 8 C -0.15 -7.06 8.70 71.98 0.63 -6.44 16 9 C -0.51 -27.96 8.84 25.60 0.23 -27.74 16 10 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 11 C 0.01 0.44 5.30 84.65 0.45 0.88 16 12 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 13 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 C -0.09 -2.68 3.23 -19.87 -0.06 -2.74 16 18 C -0.12 -3.15 8.82 22.27 0.20 -2.95 16 19 C -0.10 -2.21 10.05 22.27 0.22 -1.99 16 20 C -0.12 -2.80 9.83 22.29 0.22 -2.58 16 21 C -0.04 -1.06 6.32 22.33 0.14 -0.92 16 22 Cl -0.08 -1.84 28.96 -2.72 -0.08 -1.92 16 23 C -0.12 -3.65 9.45 22.29 0.21 -3.44 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.73 7.64 -2.39 -0.02 1.71 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.33 12.28 5.94 -89.69 -0.53 11.75 16 30 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 31 H 0.02 1.01 6.41 -2.39 -0.02 1.00 16 32 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.13 3.36 6.52 -2.91 -0.02 3.34 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.13 3.68 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -59.71 315.43 3.45 -56.26 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.53 Total: 20.40 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 3.32 Total: -38.24 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.35 Total: -82.49 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -59.71 3.45 -56.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -59.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds