Wall clock time and date at job start Mon Mar 30 2020 07:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47535 * 2 1 4 4 H 1.09001 * 109.47190 * 305.32259 * 3 2 1 5 5 N 1.46907 * 109.47224 * 65.31857 * 3 2 1 6 6 C 1.46902 * 111.00003 * 206.25629 * 5 3 2 7 7 H 1.09000 * 109.46753 * 327.22695 * 6 5 3 8 8 C 1.52990 * 109.47286 * 87.22524 * 6 5 3 9 9 C 1.50695 * 109.46797 * 207.22801 * 6 5 3 10 10 H 1.07998 * 120.00264 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99739 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99976 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 119.99955 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.47538 * 89.99683 * 13 11 9 15 15 H 1.48499 * 109.47200 * 209.99885 * 13 11 9 16 16 H 1.48503 * 109.47229 * 329.99704 * 13 11 9 17 17 C 1.50696 * 109.47237 * 185.32070 * 3 2 1 18 18 C 1.38261 * 119.99486 * 280.01558 * 17 3 2 19 19 C 1.38216 * 120.02784 * 179.97438 * 18 17 3 20 20 C 1.38232 * 120.01500 * 0.02562 * 19 18 17 21 21 C 1.38335 * 119.98461 * 359.76752 * 20 19 18 22 22 Cl 1.73598 * 120.01187 * 180.27513 * 21 20 19 23 23 C 1.38196 * 119.99363 * 100.00298 * 17 3 2 24 24 H 1.08995 * 109.47556 * 182.31717 * 1 2 3 25 25 H 1.09004 * 109.47395 * 302.31754 * 1 2 3 26 26 H 1.09000 * 109.47000 * 62.31523 * 1 2 3 27 27 H 1.08999 * 109.47315 * 239.99333 * 2 1 3 28 28 H 1.09007 * 109.47044 * 119.99872 * 2 1 3 29 29 H 1.00899 * 110.99633 * 82.29817 * 5 3 2 30 30 H 1.08999 * 109.47312 * 65.52184 * 8 6 5 31 31 H 1.09003 * 109.47182 * 185.51965 * 8 6 5 32 32 H 1.09001 * 109.47588 * 305.52431 * 8 6 5 33 33 H 0.97009 * 119.99715 * 179.97438 * 12 11 9 34 34 H 1.08006 * 119.98808 * 359.97438 * 18 17 3 35 35 H 1.08002 * 119.99282 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00962 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00773 * 0.02562 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6010 1.9831 -0.8385 5 7 1.6580 2.0969 1.2585 6 6 1.5494 3.5514 1.0836 7 1 2.2758 3.8834 0.3417 8 6 0.1384 3.9041 0.6092 9 6 1.8238 4.2371 2.3972 10 1 2.0561 3.6511 3.2741 11 6 1.7794 5.6128 2.4792 12 7 1.4980 6.3264 1.4110 13 14 2.1202 6.4628 4.1073 14 1 3.5725 6.7510 4.2208 15 1 1.3567 7.7349 4.1709 16 1 1.7023 5.5783 5.2246 17 6 3.5412 1.4444 -0.1317 18 6 4.3326 1.2007 0.9755 19 6 5.7095 1.2018 0.8553 20 6 6.2963 1.4471 -0.3720 21 6 5.5050 1.6868 -1.4811 22 17 6.2411 1.9879 -3.0242 23 6 4.1267 1.6895 -1.3593 24 1 -0.3634 -1.0267 0.0415 25 1 -0.3634 0.5494 0.8685 26 1 -0.3633 0.4775 -0.9100 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.3075 1.8688 1.9963 30 1 -0.5796 3.6616 1.3926 31 1 0.0859 4.9697 0.3855 32 1 -0.0967 3.3324 -0.2886 33 1 1.4664 7.2943 1.4688 34 1 3.8746 1.0093 1.9348 35 1 6.3271 1.0109 1.7205 36 1 7.3722 1.4475 -0.4659 37 1 3.5085 1.8801 -2.2242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:27 Heat of formation + Delta-G solvation = 3.093933 kcal Electronic energy + Delta-G solvation = -18329.957126 eV Core-core repulsion = 15518.263679 eV Total energy + Delta-G solvation = -2811.693447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51791 -36.87673 -35.98757 -33.73622 -31.46290 -30.84488 -30.40561 -27.84083 -25.39547 -24.71594 -22.55454 -22.00512 -20.41551 -19.45744 -17.19078 -16.27559 -15.51249 -15.29532 -14.72158 -14.26233 -14.11338 -13.75631 -13.45913 -13.30679 -12.98583 -12.35503 -12.12093 -11.85658 -11.45097 -11.38775 -11.23336 -11.09141 -10.97258 -10.88624 -10.72110 -10.57266 -10.31139 -10.25269 -10.12875 -9.89807 -8.83219 -8.68513 -8.51859 -8.42605 -7.35373 -6.03182 -4.09117 1.36220 1.47109 2.24272 3.28379 3.35401 3.38336 3.83068 4.39321 4.86285 4.97476 5.14929 5.22027 5.29905 5.38475 5.54564 5.59277 5.65839 5.78805 5.92634 6.07616 6.13809 6.28680 6.32593 6.37962 6.49028 6.55301 6.76685 6.81671 6.89061 6.99614 7.13396 7.24145 7.50989 7.76742 7.89251 8.23111 8.34550 8.63184 9.00476 9.56628 11.03497 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.006280 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.562030 B = 4457.431254 C = 5330.315179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.122 3.878 4 H 0.081 0.919 5 N -0.674 5.674 6 C 0.212 3.788 7 H 0.003 0.997 8 C -0.121 4.121 9 C -0.519 4.519 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.079 4.079 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.032 4.032 22 Cl -0.083 7.083 23 C -0.106 4.106 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.331 0.669 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -11.291 -4.745 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.099 0.901 5 N -0.305 5.305 6 C 0.105 3.895 7 H 0.021 0.979 8 C -0.180 4.180 9 C -0.558 4.558 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.081 4.081 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.142 4.142 21 C -0.059 4.059 22 Cl -0.055 7.055 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.290 -11.159 -5.012 13.328 hybrid contribution 1.307 1.005 0.611 1.758 sum 6.597 -10.154 -4.401 12.884 Atomic orbital electron populations 1.21645 0.95246 1.00192 1.02814 1.21463 0.96602 0.95145 1.00823 1.20740 0.86592 0.95667 0.95921 0.90078 1.60975 1.52614 1.13061 1.03886 1.19105 0.93482 0.80851 0.96083 0.97904 1.21701 0.97925 1.01750 0.96585 1.21228 1.47825 0.91464 0.95237 0.92396 1.24895 0.95055 0.97449 0.96431 1.69909 1.48702 1.05963 1.28096 0.86572 0.78140 0.79060 0.84074 1.20822 1.21213 1.19856 1.20933 0.98535 0.96253 0.92392 1.21085 0.93465 0.98911 0.98832 1.21036 0.94946 0.99623 0.96714 1.20935 0.99692 1.01838 0.91691 1.20883 0.93242 1.05051 0.86684 1.98344 1.83105 1.94569 1.29454 1.20954 0.92412 1.00798 0.98346 0.94062 0.90777 0.93569 0.92902 0.92256 0.84906 0.94925 0.90582 0.97607 0.92965 0.85259 0.85376 0.85516 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.83 37.16 0.37 -1.63 16 2 C -0.10 -1.45 5.59 -26.74 -0.15 -1.60 16 3 C 0.12 2.07 2.01 -68.87 -0.14 1.93 16 4 H 0.08 1.49 7.13 -51.93 -0.37 1.11 16 5 N -0.67 -13.43 5.48 -102.18 -0.56 -13.99 16 6 C 0.21 5.19 2.39 -68.87 -0.16 5.02 16 7 H 0.00 0.09 7.66 -51.93 -0.40 -0.31 16 8 C -0.12 -2.95 9.13 37.15 0.34 -2.61 16 9 C -0.52 -13.91 8.59 -34.44 -0.30 -14.20 16 10 H 0.06 1.53 7.58 -52.49 -0.40 1.13 16 11 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 12 N -0.89 -25.29 11.38 55.43 0.63 -24.66 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.08 -1.29 4.69 -104.63 -0.49 -1.78 16 18 C -0.10 -1.60 9.10 -39.58 -0.36 -1.96 16 19 C -0.10 -1.43 10.04 -39.59 -0.40 -1.83 16 20 C -0.12 -1.68 9.83 -39.55 -0.39 -2.07 16 21 C -0.03 -0.48 6.32 -39.50 -0.25 -0.73 16 22 Cl -0.08 -1.12 28.96 -51.86 -1.50 -2.62 16 23 C -0.11 -1.67 9.45 -39.55 -0.37 -2.04 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.33 6.46 5.76 -39.29 -0.23 6.23 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 2.03 6.24 -51.93 -0.32 1.70 16 32 H 0.00 0.11 7.57 -51.93 -0.39 -0.28 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.13 1.87 6.52 -52.48 -0.34 1.53 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.91 8.04 -52.49 -0.42 1.48 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -27.87 318.29 -9.42 -37.29 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.37 Total: 4.87 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.40 Total: -21.84 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.07 Total: -38.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.87 -9.42 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds