Wall clock time and date at job start Mon Mar 30 2020 07:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47535 * 2 1 4 4 H 1.09001 * 109.47190 * 305.32259 * 3 2 1 5 5 N 1.46907 * 109.47224 * 65.31857 * 3 2 1 6 6 C 1.46902 * 111.00003 * 206.25629 * 5 3 2 7 7 H 1.09000 * 109.46753 * 327.22695 * 6 5 3 8 8 C 1.52990 * 109.47286 * 87.22524 * 6 5 3 9 9 C 1.50695 * 109.46797 * 207.22801 * 6 5 3 10 10 H 1.07998 * 120.00264 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99739 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99976 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 119.99955 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.47538 * 89.99683 * 13 11 9 15 15 H 1.48499 * 109.47200 * 209.99885 * 13 11 9 16 16 H 1.48503 * 109.47229 * 329.99704 * 13 11 9 17 17 C 1.50696 * 109.47237 * 185.32070 * 3 2 1 18 18 C 1.38261 * 119.99486 * 280.01558 * 17 3 2 19 19 C 1.38216 * 120.02784 * 179.97438 * 18 17 3 20 20 C 1.38232 * 120.01500 * 0.02562 * 19 18 17 21 21 C 1.38335 * 119.98461 * 359.76752 * 20 19 18 22 22 Cl 1.73598 * 120.01187 * 180.27513 * 21 20 19 23 23 C 1.38196 * 119.99363 * 100.00298 * 17 3 2 24 24 H 1.08995 * 109.47556 * 182.31717 * 1 2 3 25 25 H 1.09004 * 109.47395 * 302.31754 * 1 2 3 26 26 H 1.09000 * 109.47000 * 62.31523 * 1 2 3 27 27 H 1.08999 * 109.47315 * 239.99333 * 2 1 3 28 28 H 1.09007 * 109.47044 * 119.99872 * 2 1 3 29 29 H 1.00899 * 110.99633 * 82.29817 * 5 3 2 30 30 H 1.08999 * 109.47312 * 65.52184 * 8 6 5 31 31 H 1.09003 * 109.47182 * 185.51965 * 8 6 5 32 32 H 1.09001 * 109.47588 * 305.52431 * 8 6 5 33 33 H 0.97009 * 119.99715 * 179.97438 * 12 11 9 34 34 H 1.08006 * 119.98808 * 359.97438 * 18 17 3 35 35 H 1.08002 * 119.99282 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00962 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00773 * 0.02562 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6010 1.9831 -0.8385 5 7 1.6580 2.0969 1.2585 6 6 1.5494 3.5514 1.0836 7 1 2.2758 3.8834 0.3417 8 6 0.1384 3.9041 0.6092 9 6 1.8238 4.2371 2.3972 10 1 2.0561 3.6511 3.2741 11 6 1.7794 5.6128 2.4792 12 7 1.4980 6.3264 1.4110 13 14 2.1202 6.4628 4.1073 14 1 3.5725 6.7510 4.2208 15 1 1.3567 7.7349 4.1709 16 1 1.7023 5.5783 5.2246 17 6 3.5412 1.4444 -0.1317 18 6 4.3326 1.2007 0.9755 19 6 5.7095 1.2018 0.8553 20 6 6.2963 1.4471 -0.3720 21 6 5.5050 1.6868 -1.4811 22 17 6.2411 1.9879 -3.0242 23 6 4.1267 1.6895 -1.3593 24 1 -0.3634 -1.0267 0.0415 25 1 -0.3634 0.5494 0.8685 26 1 -0.3633 0.4775 -0.9100 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.3075 1.8688 1.9963 30 1 -0.5796 3.6616 1.3926 31 1 0.0859 4.9697 0.3855 32 1 -0.0967 3.3324 -0.2886 33 1 1.4664 7.2943 1.4688 34 1 3.8746 1.0093 1.9348 35 1 6.3271 1.0109 1.7205 36 1 7.3722 1.4475 -0.4659 37 1 3.5085 1.8801 -2.2242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:26 Heat of formation + Delta-G solvation = -10.951664 kcal Electronic energy + Delta-G solvation = -18330.566189 eV Core-core repulsion = 15518.263679 eV Total energy + Delta-G solvation = -2812.302509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73255 -38.22707 -37.23623 -35.48492 -33.19015 -32.00889 -31.64595 -29.51387 -27.32196 -26.21761 -23.72774 -23.15065 -22.11732 -20.97604 -18.67949 -17.95043 -17.02277 -16.49906 -16.36292 -15.64118 -15.52322 -15.18812 -14.71967 -14.53985 -14.44750 -14.03493 -13.63399 -13.13393 -12.98527 -12.91358 -12.78939 -12.51089 -12.40055 -12.32345 -12.18197 -12.16743 -12.10397 -11.67605 -11.56071 -11.53537 -10.84180 -10.56460 -9.84039 -9.61939 -9.03201 -8.11321 -6.24220 0.20532 0.32422 1.12217 1.41393 1.42915 1.52816 2.42077 2.67676 3.18370 3.62732 3.67859 3.90149 4.12011 4.21554 4.31037 4.44143 4.49021 4.59962 4.75543 4.85831 4.89386 4.97077 5.08508 5.12911 5.20159 5.23734 5.27824 5.34597 5.37394 5.48791 5.58701 5.65634 5.73143 5.86928 5.91123 6.23394 6.49952 6.80387 7.05036 7.45950 8.94610 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.006280 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.562030 B = 4457.431254 C = 5330.315179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C 0.125 3.875 4 H 0.061 0.939 5 N -0.668 5.668 6 C 0.222 3.778 7 H -0.033 1.033 8 C -0.109 4.109 9 C -0.533 4.533 10 H 0.060 0.940 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.096 4.096 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.122 4.122 21 C -0.042 4.042 22 Cl -0.074 7.074 23 C -0.122 4.122 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.334 0.666 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.260 0.740 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -12.451 -3.914 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C 0.014 3.986 4 H 0.080 0.920 5 N -0.299 5.299 6 C 0.114 3.886 7 H -0.015 1.015 8 C -0.168 4.168 9 C -0.571 4.571 10 H 0.078 0.922 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.783 3.217 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.098 4.098 18 C -0.137 4.137 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.068 4.068 22 Cl -0.045 7.045 23 C -0.141 4.141 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.170 0.830 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.410 -12.345 -4.185 14.526 hybrid contribution 1.001 1.327 0.286 1.687 sum 7.411 -11.018 -3.899 13.839 Atomic orbital electron populations 1.21611 0.95085 1.01314 1.01596 1.21413 0.96611 0.93194 1.01984 1.20717 0.87565 0.96728 0.93589 0.92044 1.60882 1.53229 1.10262 1.05530 1.18811 0.92267 0.83357 0.94185 1.01539 1.21516 0.97904 1.00222 0.97112 1.21584 1.47464 0.91948 0.96103 0.92175 1.25692 0.94972 0.98264 0.99601 1.70049 1.49645 1.06069 1.30012 0.85573 0.77965 0.77903 0.80296 1.20378 1.21157 1.18968 1.20868 0.98015 0.97696 0.93229 1.21262 0.94428 0.99343 0.98623 1.21396 0.94518 0.98259 0.97787 1.21291 1.00958 1.00595 0.91222 1.21035 0.93104 1.05042 0.87636 1.98344 1.82778 1.94504 1.28879 1.21031 0.93212 1.01538 0.98330 0.91691 0.92970 0.93859 0.91243 0.91459 0.84569 0.95412 0.93220 0.95903 0.93067 0.84800 0.82343 0.83021 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.83 71.98 0.71 -3.03 16 2 C -0.09 -2.56 5.59 30.59 0.17 -2.38 16 3 C 0.12 4.23 2.01 44.16 0.09 4.32 16 4 H 0.06 2.31 7.13 -2.39 -0.02 2.29 16 5 N -0.67 -26.68 5.48 -477.18 -2.61 -29.30 16 6 C 0.22 11.08 2.39 44.16 0.11 11.19 16 7 H -0.03 -1.87 7.66 -2.39 -0.02 -1.88 16 8 C -0.11 -5.42 9.13 71.98 0.66 -4.76 16 9 C -0.53 -28.69 8.59 25.60 0.22 -28.47 16 10 H 0.06 3.14 7.58 -2.91 -0.02 3.12 16 11 C 0.01 0.76 5.30 84.65 0.45 1.21 16 12 N -0.92 -53.21 11.38 21.45 0.24 -52.97 16 13 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C -0.10 -3.10 4.69 -19.87 -0.09 -3.20 16 18 C -0.12 -3.47 9.10 22.27 0.20 -3.26 16 19 C -0.10 -2.54 10.04 22.26 0.22 -2.31 16 20 C -0.12 -3.07 9.83 22.29 0.22 -2.85 16 21 C -0.04 -1.19 6.32 22.32 0.14 -1.04 16 22 Cl -0.07 -1.90 28.96 -2.72 -0.08 -1.98 16 23 C -0.12 -3.82 9.45 22.29 0.21 -3.61 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.64 7.70 -2.39 -0.02 1.62 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.33 12.94 5.76 -89.69 -0.52 12.42 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 2.72 6.24 -2.39 -0.01 2.71 16 32 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 33 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 34 H 0.13 3.71 6.52 -2.91 -0.02 3.69 16 35 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.13 3.87 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -59.56 318.29 3.42 -56.14 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.54 Total: 20.97 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 3.30 Total: -38.21 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -2.37 Total: -82.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -59.56 3.42 -56.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.191 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds