Wall clock time and date at job start Mon Mar 30 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47117 * 2 1 4 4 C 1.50701 * 109.46693 * 240.00522 * 2 1 3 5 5 H 1.08000 * 119.99868 * 239.99665 * 4 2 1 6 6 C 1.37877 * 119.99996 * 59.72389 * 4 2 1 7 7 N 1.31516 * 120.00332 * 0.27536 * 6 4 2 8 8 Si 1.86806 * 120.00169 * 180.27253 * 6 4 2 9 9 H 1.48495 * 109.46842 * 90.00092 * 8 6 4 10 10 H 1.48500 * 109.47288 * 210.00413 * 8 6 4 11 11 H 1.48501 * 109.46757 * 330.00459 * 8 6 4 12 12 N 1.46895 * 109.47525 * 120.00818 * 2 1 3 13 13 C 1.46899 * 111.00256 * 176.04543 * 12 2 1 14 14 C 1.46906 * 110.99708 * 299.99688 * 12 2 1 15 15 H 1.08998 * 109.47427 * 318.16546 * 14 12 2 16 16 C 1.52994 * 109.47116 * 198.16077 * 14 12 2 17 17 C 1.50706 * 109.47021 * 78.16286 * 14 12 2 18 18 C 1.38244 * 119.98518 * 38.63815 * 17 14 12 19 19 C 1.38217 * 120.00885 * 179.72208 * 18 17 14 20 20 C 1.38356 * 119.98565 * 0.55332 * 19 18 17 21 21 Cl 1.73600 * 120.01031 * 179.70112 * 20 19 18 22 22 C 1.38346 * 119.97349 * 359.72393 * 20 19 18 23 23 C 1.38214 * 119.99096 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.46787 * 299.99503 * 1 2 3 25 25 H 1.09000 * 109.47332 * 59.99498 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00526 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47161 * 66.86579 * 13 12 2 29 29 H 1.09002 * 109.46845 * 186.86946 * 13 12 2 30 30 H 1.08999 * 109.46729 * 306.87015 * 13 12 2 31 31 H 1.09004 * 109.47333 * 180.02562 * 16 14 12 32 32 H 1.09002 * 109.47672 * 300.00125 * 16 14 12 33 33 H 1.08998 * 109.47142 * 60.00114 * 16 14 12 34 34 H 1.07994 * 119.99521 * 0.02562 * 18 17 14 35 35 H 1.08000 * 120.00454 * 180.27513 * 19 18 17 36 36 H 1.08007 * 120.00372 * 179.97438 * 22 20 19 37 37 H 1.08003 * 119.99708 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6944 -0.2425 -2.4828 7 7 0.9383 0.8268 -2.6034 8 14 2.3107 -1.1274 -4.0082 9 1 1.3304 -2.1696 -4.4056 10 1 2.4718 -0.1512 -5.1156 11 1 3.6197 -1.7647 -3.7157 12 7 2.0198 -0.6926 1.1993 13 6 3.4851 -0.7947 1.1868 14 6 1.5488 -0.0266 2.4210 15 1 1.6243 1.0538 2.2981 16 6 2.4105 -0.4665 3.6062 17 6 0.1123 -0.4038 2.6770 18 6 -0.3172 -1.6947 2.4317 19 6 -1.6332 -2.0427 2.6717 20 6 -2.5232 -1.0958 3.1466 21 17 -4.1780 -1.5303 3.4408 22 6 -2.0940 0.1973 3.3863 23 6 -0.7764 0.5426 3.1519 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7009 1.1562 -3.4843 28 1 3.9195 0.2005 1.2820 29 1 3.8132 -1.4156 2.0204 30 1 3.8100 -1.2446 0.2487 31 1 2.0608 0.0273 4.5129 32 1 2.3350 -1.5469 3.7293 33 1 3.4494 -0.1937 3.4211 34 1 0.3767 -2.4326 2.0572 35 1 -1.9676 -3.0524 2.4843 36 1 -2.7885 0.9370 3.7566 37 1 -0.4412 1.5520 3.3394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251438498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:37 Heat of formation + Delta-G solvation = 27.907616 kcal Electronic energy + Delta-G solvation = -18722.556600 eV Core-core repulsion = 15911.939155 eV Total energy + Delta-G solvation = -2810.617445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59723 -37.22586 -36.04906 -33.36216 -31.32529 -30.69886 -30.01731 -27.62691 -25.64986 -24.49741 -22.66700 -22.29994 -20.59130 -19.02848 -16.91383 -16.25878 -15.48337 -15.29425 -14.74467 -14.12790 -13.90873 -13.89551 -13.15647 -13.06952 -12.84831 -12.36034 -12.17124 -11.90851 -11.80510 -11.39657 -11.17700 -11.00825 -10.90602 -10.68674 -10.64042 -10.50965 -10.45574 -10.08162 -9.96889 -9.82432 -8.98109 -8.59924 -8.45539 -7.95845 -7.24366 -6.00549 -4.05950 1.50424 1.66883 2.37065 3.30085 3.36764 3.38954 3.98426 4.39455 4.81387 5.15043 5.16695 5.19949 5.31497 5.58633 5.64629 5.72073 5.80267 5.91482 6.05172 6.12708 6.17225 6.30155 6.33964 6.44406 6.54028 6.64852 6.75266 6.90929 7.00963 7.11840 7.16081 7.20546 7.52849 7.73892 7.82540 8.20003 8.33219 8.57229 9.00069 9.58981 11.05431 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.005968 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.335389 B = 4690.763171 C = 5549.018968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 H -0.004 1.004 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.033 3.967 14 C 0.112 3.888 15 H 0.044 0.956 16 C -0.145 4.145 17 C -0.034 4.034 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.045 4.045 21 Cl -0.091 7.091 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.020 0.980 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.010 0.990 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 -2.232 12.566 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.256 5.256 13 C -0.115 4.115 14 C 0.003 3.997 15 H 0.062 0.938 16 C -0.202 4.202 17 C -0.035 4.035 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.071 4.071 21 Cl -0.062 7.062 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.266 -2.623 12.431 13.118 hybrid contribution 0.313 0.463 -1.038 1.179 sum -2.953 -2.160 11.393 11.966 Atomic orbital electron populations 1.22113 0.97479 0.99578 1.00292 1.19284 0.92539 0.91738 0.85682 0.98597 1.21143 1.30998 1.12356 0.89760 0.91875 1.24925 0.95198 0.95067 0.98990 1.69899 1.36780 1.23023 1.23363 0.86549 0.79170 0.79347 0.82629 1.20699 1.21378 1.19955 1.62212 1.09335 1.52398 1.01670 1.22306 0.88550 0.98602 1.02034 1.20525 0.90619 0.96521 0.92022 0.93818 1.21991 0.99510 1.01977 0.96731 1.19875 0.95481 0.93381 0.94719 1.21009 0.94551 0.96944 0.96496 1.21032 0.93289 0.98963 1.00118 1.20803 0.85014 0.95400 1.05881 1.98331 1.19573 1.93411 1.94886 1.20827 0.96239 0.94451 1.01838 1.20904 0.92492 0.99360 1.00519 0.96135 0.90244 0.94708 0.93023 0.97140 0.93262 0.90275 0.92928 0.91912 0.92038 0.84193 0.85598 0.85716 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.61 37.16 0.28 -3.02 16 2 C 0.21 5.23 1.98 -68.87 -0.14 5.09 16 3 H 0.00 -0.10 8.08 -51.93 -0.42 -0.52 16 4 C -0.50 -13.46 7.85 -34.44 -0.27 -13.73 16 5 H 0.06 1.67 6.42 -52.49 -0.34 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.35 11.31 55.43 0.63 -24.73 16 8 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -10.70 3.77 -229.68 -0.87 -11.56 16 13 C 0.03 0.61 8.14 60.06 0.49 1.10 16 14 C 0.11 1.92 2.24 -68.86 -0.15 1.76 16 15 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 16 C -0.14 -1.99 8.10 37.15 0.30 -1.69 16 17 C -0.03 -0.56 2.44 -104.62 -0.26 -0.81 16 18 C -0.07 -1.18 7.58 -39.59 -0.30 -1.48 16 19 C -0.12 -1.75 9.83 -39.55 -0.39 -2.14 16 20 C -0.04 -0.66 6.32 -39.50 -0.25 -0.91 16 21 Cl -0.09 -1.21 28.96 -51.86 -1.50 -2.72 16 22 C -0.11 -1.65 9.83 -39.55 -0.39 -2.04 16 23 C -0.11 -1.72 8.53 -39.59 -0.34 -2.06 16 24 H 0.02 0.44 4.46 -51.93 -0.23 0.21 16 25 H 0.08 2.16 6.06 -51.93 -0.31 1.84 16 26 H 0.03 0.84 7.06 -51.93 -0.37 0.47 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.01 0.19 8.07 -51.93 -0.42 -0.23 16 29 H 0.05 0.76 6.51 -51.93 -0.34 0.43 16 30 H 0.08 1.60 6.01 -51.93 -0.31 1.28 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.81 6.45 -51.93 -0.33 0.47 16 34 H 0.14 2.38 7.67 -52.49 -0.40 1.98 16 35 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 37 H 0.12 1.66 8.04 -52.48 -0.42 1.24 16 LS Contribution 303.97 15.07 4.58 4.58 Total: -1.00 -27.79 303.97 -8.81 -36.60 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.13 Total: 0.07 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.50 Total: -18.39 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.24 Total: -36.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.79 -8.81 -36.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251438498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.510 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds