Wall clock time and date at job start Mon Mar 30 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47117 * 2 1 4 4 C 1.50701 * 109.46693 * 240.00522 * 2 1 3 5 5 H 1.08000 * 119.99868 * 239.99665 * 4 2 1 6 6 C 1.37877 * 119.99996 * 59.72389 * 4 2 1 7 7 N 1.31516 * 120.00332 * 0.27536 * 6 4 2 8 8 Si 1.86806 * 120.00169 * 180.27253 * 6 4 2 9 9 H 1.48495 * 109.46842 * 90.00092 * 8 6 4 10 10 H 1.48500 * 109.47288 * 210.00413 * 8 6 4 11 11 H 1.48501 * 109.46757 * 330.00459 * 8 6 4 12 12 N 1.46895 * 109.47525 * 120.00818 * 2 1 3 13 13 C 1.46899 * 111.00256 * 176.04543 * 12 2 1 14 14 C 1.46906 * 110.99708 * 299.99688 * 12 2 1 15 15 H 1.08998 * 109.47427 * 318.16546 * 14 12 2 16 16 C 1.52994 * 109.47116 * 198.16077 * 14 12 2 17 17 C 1.50706 * 109.47021 * 78.16286 * 14 12 2 18 18 C 1.38244 * 119.98518 * 38.63815 * 17 14 12 19 19 C 1.38217 * 120.00885 * 179.72208 * 18 17 14 20 20 C 1.38356 * 119.98565 * 0.55332 * 19 18 17 21 21 Cl 1.73600 * 120.01031 * 179.70112 * 20 19 18 22 22 C 1.38346 * 119.97349 * 359.72393 * 20 19 18 23 23 C 1.38214 * 119.99096 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.46787 * 299.99503 * 1 2 3 25 25 H 1.09000 * 109.47332 * 59.99498 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00526 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47161 * 66.86579 * 13 12 2 29 29 H 1.09002 * 109.46845 * 186.86946 * 13 12 2 30 30 H 1.08999 * 109.46729 * 306.87015 * 13 12 2 31 31 H 1.09004 * 109.47333 * 180.02562 * 16 14 12 32 32 H 1.09002 * 109.47672 * 300.00125 * 16 14 12 33 33 H 1.08998 * 109.47142 * 60.00114 * 16 14 12 34 34 H 1.07994 * 119.99521 * 0.02562 * 18 17 14 35 35 H 1.08000 * 120.00454 * 180.27513 * 19 18 17 36 36 H 1.08007 * 120.00372 * 179.97438 * 22 20 19 37 37 H 1.08003 * 119.99708 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6944 -0.2425 -2.4828 7 7 0.9383 0.8268 -2.6034 8 14 2.3107 -1.1274 -4.0082 9 1 1.3304 -2.1696 -4.4056 10 1 2.4718 -0.1512 -5.1156 11 1 3.6197 -1.7647 -3.7157 12 7 2.0198 -0.6926 1.1993 13 6 3.4851 -0.7947 1.1868 14 6 1.5488 -0.0266 2.4210 15 1 1.6243 1.0538 2.2981 16 6 2.4105 -0.4665 3.6062 17 6 0.1123 -0.4038 2.6770 18 6 -0.3172 -1.6947 2.4317 19 6 -1.6332 -2.0427 2.6717 20 6 -2.5232 -1.0958 3.1466 21 17 -4.1780 -1.5303 3.4408 22 6 -2.0940 0.1973 3.3863 23 6 -0.7764 0.5426 3.1519 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7009 1.1562 -3.4843 28 1 3.9195 0.2005 1.2820 29 1 3.8132 -1.4156 2.0204 30 1 3.8100 -1.2446 0.2487 31 1 2.0608 0.0273 4.5129 32 1 2.3350 -1.5469 3.7293 33 1 3.4494 -0.1937 3.4211 34 1 0.3767 -2.4326 2.0572 35 1 -1.9676 -3.0524 2.4843 36 1 -2.7885 0.9370 3.7566 37 1 -0.4412 1.5520 3.3394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251438498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:37 Heat of formation + Delta-G solvation = 13.637622 kcal Electronic energy + Delta-G solvation = -18723.175393 eV Core-core repulsion = 15911.939155 eV Total energy + Delta-G solvation = -2811.236238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89907 -38.64096 -37.23539 -35.22487 -32.84427 -31.88880 -31.67122 -29.02155 -27.46683 -26.22674 -23.92879 -23.61107 -22.23736 -20.52689 -18.45618 -17.91869 -17.08429 -16.62985 -16.34063 -15.60860 -15.46192 -15.23028 -14.54719 -14.37247 -14.28589 -13.84025 -13.59678 -13.53282 -13.25246 -12.83584 -12.66083 -12.54840 -12.50138 -12.29735 -12.06647 -11.94950 -11.91451 -11.84844 -11.65442 -11.44867 -10.89725 -10.49353 -9.81945 -9.26129 -8.90807 -8.08302 -6.20646 0.29872 0.48093 1.23327 1.41962 1.43224 1.52590 2.42645 2.77313 3.18882 3.35728 3.89559 3.98379 4.07412 4.34855 4.37616 4.53953 4.58394 4.64453 4.75651 4.83507 4.91020 4.96869 5.02112 5.12760 5.14999 5.16412 5.24457 5.35836 5.38827 5.43448 5.54660 5.70006 5.78948 5.88404 5.98285 6.30634 6.43388 6.77471 6.95315 7.48447 8.96406 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.005968 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.335389 B = 4690.763171 C = 5549.018968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.221 3.779 3 H -0.043 1.043 4 C -0.515 4.515 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.533 5.533 13 C 0.035 3.965 14 C 0.110 3.890 15 H 0.031 0.969 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.051 4.051 21 Cl -0.077 7.077 22 C -0.113 4.113 23 C -0.119 4.119 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.259 0.741 28 H 0.008 0.992 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -2.891 13.719 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 H -0.025 1.025 4 C -0.554 4.554 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.258 5.258 13 C -0.113 4.113 14 C 0.002 3.998 15 H 0.049 0.951 16 C -0.194 4.194 17 C -0.051 4.051 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.077 4.077 21 Cl -0.048 7.048 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.373 -3.294 13.605 14.399 hybrid contribution 0.299 0.672 -1.314 1.506 sum -3.074 -2.622 12.291 12.938 Atomic orbital electron populations 1.21874 0.97279 0.98812 0.99590 1.19022 0.92599 0.89741 0.87251 1.02515 1.21463 1.30751 1.12266 0.90889 0.91987 1.25701 0.95458 0.95774 1.01907 1.70040 1.37896 1.24362 1.23831 0.85578 0.78917 0.78190 0.79074 1.20438 1.21234 1.19016 1.62121 1.10311 1.51957 1.01388 1.22323 0.87577 0.98982 1.02374 1.20624 0.91932 0.95537 0.91750 0.95146 1.21936 0.99155 1.02402 0.95873 1.19909 0.95375 0.93859 0.95914 1.20968 0.95063 0.96848 0.97279 1.21186 0.92936 0.99831 0.99827 1.20951 0.85711 0.95579 1.05468 1.98336 1.18382 1.93347 1.94753 1.21105 0.96314 0.94785 1.00968 1.21117 0.92666 0.99822 1.00182 0.94164 0.93543 0.95311 0.93160 0.97319 0.89768 0.92372 0.90879 0.91456 0.91384 0.85210 0.84311 0.83496 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 7.61 71.98 0.55 -5.24 16 2 C 0.22 11.05 1.98 44.17 0.09 11.14 16 3 H -0.04 -2.42 8.08 -2.39 -0.02 -2.44 16 4 C -0.52 -27.93 7.85 25.60 0.20 -27.73 16 5 H 0.06 3.31 6.42 -2.91 -0.02 3.29 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.56 11.31 21.45 0.24 -53.32 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 N -0.53 -21.40 3.77 -880.58 -3.32 -24.72 16 13 C 0.04 1.28 8.14 127.69 1.04 2.32 16 14 C 0.11 3.67 2.24 44.17 0.10 3.77 16 15 H 0.03 1.10 7.79 -2.39 -0.02 1.08 16 16 C -0.14 -3.44 8.10 71.98 0.58 -2.85 16 17 C -0.05 -1.59 2.44 -19.86 -0.05 -1.63 16 18 C -0.08 -2.66 7.58 22.27 0.17 -2.49 16 19 C -0.12 -3.46 9.83 22.29 0.22 -3.24 16 20 C -0.05 -1.40 6.32 22.32 0.14 -1.26 16 21 Cl -0.08 -1.90 28.96 -2.72 -0.08 -1.98 16 22 C -0.11 -3.01 9.83 22.29 0.22 -2.79 16 23 C -0.12 -3.40 8.53 22.26 0.19 -3.21 16 24 H 0.04 1.77 4.46 -2.38 -0.01 1.76 16 25 H 0.05 2.58 6.06 -2.39 -0.01 2.57 16 26 H 0.03 1.39 7.06 -2.39 -0.02 1.38 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16 29 H 0.08 2.44 6.51 -2.39 -0.02 2.43 16 30 H 0.06 2.34 6.01 -2.39 -0.01 2.32 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.07 1.62 6.45 -2.39 -0.02 1.60 16 34 H 0.13 4.36 7.67 -2.91 -0.02 4.34 16 35 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.14 3.46 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -59.78 303.97 3.82 -55.97 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.06 Total: 10.54 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.90 Total: -32.21 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.08 Total: -78.03 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -59.78 3.82 -55.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251438498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.603 kcal (2) G-P(sol) polarization free energy of solvation -59.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds