Wall clock time and date at job start Mon Mar 30 2020 07:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 C 1.50705 * 109.47135 * 239.99513 * 2 1 3 5 5 H 1.07997 * 120.00402 * 240.00215 * 4 2 1 6 6 C 1.37873 * 119.99546 * 60.00797 * 4 2 1 7 7 N 1.31520 * 120.00248 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99921 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47497 * 89.99520 * 8 6 4 10 10 H 1.48508 * 109.47060 * 209.99717 * 8 6 4 11 11 H 1.48501 * 109.46885 * 329.99231 * 8 6 4 12 12 N 1.46902 * 109.46817 * 120.00183 * 2 1 3 13 13 C 1.46894 * 111.00398 * 58.95524 * 12 2 1 14 14 C 1.46899 * 110.99980 * 294.99709 * 12 2 1 15 15 H 1.09002 * 109.47043 * 60.00322 * 14 12 2 16 16 C 1.52997 * 109.47254 * 300.00251 * 14 12 2 17 17 C 1.50699 * 109.47244 * 180.02562 * 14 12 2 18 18 C 1.38264 * 119.99106 * 39.72485 * 17 14 12 19 19 C 1.38229 * 120.02397 * 179.76670 * 18 17 14 20 20 C 1.38229 * 120.01095 * 0.50557 * 19 18 17 21 21 C 1.38327 * 119.99004 * 359.75315 * 20 19 18 22 22 Cl 1.73603 * 120.01464 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99344 * 219.99741 * 17 14 12 24 24 H 1.08999 * 109.47293 * 300.00304 * 1 2 3 25 25 H 1.09001 * 109.47121 * 60.00410 * 1 2 3 26 26 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99748 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46987 * 296.04599 * 13 12 2 29 29 H 1.09004 * 109.47461 * 56.04278 * 13 12 2 30 30 H 1.08999 * 109.47654 * 176.04709 * 13 12 2 31 31 H 1.09002 * 109.47153 * 300.00004 * 16 14 12 32 32 H 1.08998 * 109.47533 * 59.99633 * 16 14 12 33 33 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 34 34 H 1.07998 * 119.99275 * 359.97438 * 18 17 14 35 35 H 1.07999 * 119.98869 * 180.25747 * 19 18 17 36 36 H 1.08003 * 120.00843 * 179.72143 * 20 19 18 37 37 H 1.07999 * 120.00596 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4867 -0.1415 -5.1123 11 1 3.6293 -1.7585 -3.7121 12 7 2.0196 -0.6926 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 1 0.5631 0.1176 2.4785 16 6 2.2599 1.4411 2.3772 17 6 2.1673 -0.6995 3.6249 18 6 3.4177 -1.2885 3.5902 19 6 3.8961 -1.9619 4.6984 20 6 3.1202 -2.0559 5.8386 21 6 1.8669 -1.4714 5.8721 22 17 0.8921 -1.5884 7.3039 23 6 1.3907 -0.7927 4.7642 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7084 1.1609 -3.4844 28 1 0.4419 -2.0731 1.3347 29 1 1.8167 -2.5951 0.3318 30 1 1.9616 -2.5869 2.1059 31 1 3.3454 1.3626 2.3168 32 1 1.8852 1.9756 1.5043 33 1 1.9843 1.9842 3.2811 34 1 4.0223 -1.2195 2.6980 35 1 4.8746 -2.4182 4.6721 36 1 3.4921 -2.5860 6.7029 37 1 0.4120 -0.3367 4.7895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251612708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:48 Heat of formation + Delta-G solvation = 22.130428 kcal Electronic energy + Delta-G solvation = -18423.896437 eV Core-core repulsion = 15613.028475 eV Total energy + Delta-G solvation = -2810.867962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63341 -37.40790 -36.30691 -33.34489 -31.59011 -30.58406 -29.29057 -28.38584 -25.26248 -24.35271 -23.47192 -22.52856 -20.88773 -18.64766 -16.86659 -16.19378 -15.76043 -15.28205 -14.82234 -14.27405 -14.05945 -13.73039 -13.48325 -13.16004 -13.03063 -12.49960 -11.92432 -11.60585 -11.58847 -11.48945 -11.29720 -11.16869 -11.05487 -10.89844 -10.78123 -10.71398 -10.50477 -10.31125 -10.02797 -9.69224 -8.89061 -8.76843 -8.46799 -8.37648 -7.19000 -6.02505 -4.05864 1.30983 1.37996 2.15102 3.29736 3.36746 3.40280 3.76693 4.39712 4.77862 4.91169 5.01120 5.21797 5.29946 5.49290 5.52808 5.66093 5.81511 5.92544 5.97945 6.09811 6.24215 6.30585 6.36894 6.44294 6.52832 6.64561 6.71440 6.78227 6.84147 6.89064 6.96991 7.12291 7.48432 7.70358 7.81895 8.10738 8.36248 8.57335 8.99773 9.59039 11.04596 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036433 B = 0.004441 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.339595 B = 6303.130903 C = 6551.456795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.208 3.792 3 H 0.047 0.953 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.526 5.526 13 C 0.032 3.968 14 C 0.113 3.887 15 H 0.045 0.955 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.037 4.037 22 Cl -0.085 7.085 23 C -0.113 4.113 24 H 0.007 0.993 25 H 0.088 0.912 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.015 0.985 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -3.231 14.997 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.102 3.898 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.117 4.117 14 C 0.004 3.996 15 H 0.063 0.937 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.103 4.103 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.063 4.063 22 Cl -0.056 7.056 23 C -0.132 4.132 24 H 0.026 0.974 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.724 -3.129 14.943 15.508 hybrid contribution -0.852 -0.474 -0.671 1.183 sum 1.872 -3.603 14.272 14.838 Atomic orbital electron populations 1.22408 1.01025 0.99374 1.00487 1.19374 0.89653 0.95033 0.85691 0.93512 1.21111 1.30585 1.12427 0.89658 0.91958 1.24913 0.95256 0.95108 0.98961 1.69882 1.37055 1.23045 1.23383 0.86543 0.79230 0.79287 0.82613 1.20882 1.21326 1.19862 1.62443 1.59305 1.01801 1.01474 1.22268 0.96894 0.91114 1.01395 1.20549 0.97119 0.93447 0.88512 0.93713 1.21830 1.01626 0.94661 1.01427 1.20017 0.94056 0.96555 0.94349 1.21318 0.95536 0.95119 0.98362 1.21148 0.99765 0.99675 0.92693 1.20952 0.92968 1.00879 0.99284 1.20806 0.93491 1.03348 0.88701 1.98346 1.71099 1.97257 1.38886 1.20938 1.00533 0.99842 0.91869 0.97364 0.89347 0.95162 0.93027 0.96657 0.90653 0.93738 0.91975 0.91154 0.93355 0.84079 0.85403 0.85605 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.27 37.16 0.31 -3.79 16 2 C 0.21 4.98 2.09 -68.86 -0.14 4.84 16 3 H 0.05 1.21 6.05 -51.93 -0.31 0.90 16 4 C -0.50 -13.17 7.88 -34.44 -0.27 -13.44 16 5 H 0.06 1.65 6.77 -52.49 -0.36 1.29 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.53 -10.62 3.94 -229.69 -0.91 -11.53 16 13 C 0.03 0.61 8.36 60.06 0.50 1.11 16 14 C 0.11 1.96 1.99 -68.87 -0.14 1.82 16 15 H 0.05 0.82 6.30 -51.93 -0.33 0.49 16 16 C -0.14 -2.27 8.95 37.16 0.33 -1.94 16 17 C -0.05 -0.74 3.79 -104.63 -0.40 -1.14 16 18 C -0.09 -1.21 8.05 -39.58 -0.32 -1.53 16 19 C -0.11 -1.38 10.05 -39.59 -0.40 -1.78 16 20 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 21 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 22 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 16 23 C -0.11 -1.58 9.45 -39.55 -0.37 -1.96 16 24 H 0.01 0.16 6.52 -51.93 -0.34 -0.18 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.03 0.70 6.48 -51.93 -0.34 0.36 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.01 0.30 6.51 -51.93 -0.34 -0.04 16 29 H 0.07 1.56 6.41 -51.93 -0.33 1.22 16 30 H 0.04 0.77 6.10 -51.93 -0.32 0.45 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.28 6.30 -51.93 -0.33 0.95 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.14 2.13 7.71 -52.49 -0.40 1.73 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -26.80 305.36 -8.78 -35.58 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.95 Total: 1.08 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.63 Total: -18.91 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.28 Total: -35.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.80 -8.78 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251612708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.714 kcal (2) G-P(sol) polarization free energy of solvation -26.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds