Wall clock time and date at job start Mon Mar 30 2020 07:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 C 1.50703 * 109.47178 * 239.99587 * 2 1 3 5 5 C 1.35163 * 125.60586 * 99.64775 * 4 2 1 6 6 C 1.40307 * 107.12490 * 179.97438 * 5 4 2 7 7 C 1.36641 * 106.70293 * 0.02562 * 6 5 4 8 8 C 1.46470 * 125.99568 * 179.97438 * 7 6 5 9 9 O 1.21624 * 120.00316 * 0.02562 * 8 7 6 10 10 O 1.34898 * 120.00095 * 180.02562 * 8 7 6 11 11 O 1.33910 * 125.60773 * 279.34646 * 4 2 1 12 12 N 1.46904 * 109.46931 * 120.00111 * 2 1 3 13 13 C 1.46904 * 110.99646 * 305.16877 * 12 2 1 14 14 C 1.46902 * 110.99971 * 181.21890 * 12 2 1 15 15 H 1.08995 * 109.46826 * 309.42468 * 14 12 2 16 16 C 1.52995 * 109.47119 * 69.42517 * 14 12 2 17 17 C 1.50698 * 109.47022 * 189.42787 * 14 12 2 18 18 H 1.07997 * 120.00017 * 359.97438 * 17 14 12 19 19 C 1.37880 * 120.00072 * 180.02562 * 17 14 12 20 20 N 1.31520 * 119.99723 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00131 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47094 * 59.99747 * 21 19 17 23 23 H 1.48500 * 109.47077 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47308 * 299.99879 * 21 19 17 25 25 H 1.09007 * 109.46813 * 306.35447 * 1 2 3 26 26 H 1.09002 * 109.47042 * 66.34913 * 1 2 3 27 27 H 1.08995 * 109.47760 * 186.35089 * 1 2 3 28 28 H 1.07997 * 126.44151 * 0.02562 * 5 4 2 29 29 H 1.08005 * 126.65092 * 180.02562 * 6 5 4 30 30 H 0.96699 * 116.99812 * 180.02562 * 10 8 7 31 31 H 1.08996 * 109.46893 * 66.85766 * 13 12 2 32 32 H 1.09006 * 109.46536 * 186.85361 * 13 12 2 33 33 H 1.08993 * 109.47333 * 306.85337 * 13 12 2 34 34 H 1.09004 * 109.47274 * 306.61941 * 16 14 12 35 35 H 1.09003 * 109.47635 * 66.62027 * 16 14 12 36 36 H 1.09004 * 109.47177 * 186.62068 * 16 14 12 37 37 H 0.96999 * 119.99770 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 2.4683 -0.1126 -2.3615 6 6 2.8422 -1.1321 -3.2500 7 6 2.6120 -2.3163 -2.6083 8 6 2.8561 -3.6531 -3.1547 9 8 3.3046 -3.7784 -4.2782 10 8 2.5834 -4.7456 -2.4117 11 8 2.1255 -2.0379 -1.3808 12 7 2.0196 -0.6925 1.1995 13 6 1.4503 -0.1014 2.4179 14 6 3.4878 -0.6869 1.2481 15 1 3.8842 -1.0395 0.2960 16 6 3.9839 0.7362 1.5115 17 6 3.9572 -1.5955 2.3550 18 1 3.2369 -2.1239 2.9619 19 6 5.3062 -1.7514 2.5936 20 7 6.1833 -1.1076 1.8548 21 14 5.8880 -2.8771 3.9661 22 1 5.4068 -4.2586 3.7107 23 1 7.3722 -2.8716 4.0152 24 1 5.3476 -2.3966 5.2630 25 1 -0.3633 0.6092 0.8277 26 1 -0.3633 0.4123 -0.9414 27 1 -0.3634 -1.0213 0.1137 28 1 2.5200 0.9502 -2.5464 29 1 3.2356 -1.0055 -4.2479 30 1 2.7613 -5.6063 -2.8149 31 1 0.3769 -0.2890 2.4453 32 1 1.9201 -0.5502 3.2931 33 1 1.6314 0.9734 2.4192 34 1 3.5486 1.4144 0.7776 35 1 3.6861 1.0453 2.5134 36 1 5.0707 0.7628 1.4311 37 1 7.1324 -1.2175 2.0224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252554335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:21 Heat of formation + Delta-G solvation = -64.696374 kcal Electronic energy + Delta-G solvation = -21110.226902 eV Core-core repulsion = 17854.884683 eV Total energy + Delta-G solvation = -3255.342220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.44405 -39.75092 -37.72814 -36.04009 -33.47231 -32.77668 -31.32271 -29.46112 -27.85425 -25.80196 -25.23470 -23.97730 -21.82031 -21.28152 -20.38353 -19.01452 -18.19647 -17.35482 -16.48849 -16.01573 -15.59327 -15.15659 -14.92588 -14.44472 -13.66992 -13.62054 -13.36220 -12.96082 -12.79247 -12.63285 -12.26855 -12.07655 -11.65789 -11.52470 -11.44712 -11.16407 -10.97485 -10.82463 -10.79532 -10.69677 -10.46182 -10.09634 -9.87739 -9.75860 -8.94415 -8.43350 -8.26255 -7.31643 -6.01699 -4.04792 1.09703 2.51218 2.70223 3.11669 3.32615 3.37013 3.40001 3.47475 4.38883 4.63734 4.96392 5.10061 5.30397 5.36936 5.41937 5.52409 5.76550 5.83361 5.91410 6.01228 6.10501 6.13276 6.27826 6.38155 6.43348 6.53106 6.60133 6.72563 6.81899 7.03446 7.21186 7.39719 7.61954 7.79994 7.95698 8.05702 8.28699 8.51316 8.99625 9.59596 11.06014 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.007435 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.179350 B = 3764.867007 C = 4810.208323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 H 0.072 0.928 4 C 0.086 3.914 5 C -0.242 4.242 6 C -0.098 4.098 7 C -0.087 4.087 8 C 0.578 3.422 9 O -0.509 6.509 10 O -0.499 6.499 11 O -0.120 6.120 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.210 3.790 15 H 0.039 0.961 16 C -0.169 4.169 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.414 0.586 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.017 0.983 34 H 0.005 0.995 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 1.381 -6.667 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.034 3.966 3 H 0.089 0.911 4 C 0.031 3.969 5 C -0.261 4.261 6 C -0.118 4.118 7 C -0.138 4.138 8 C 0.423 3.577 9 O -0.400 6.400 10 O -0.310 6.310 11 O -0.013 6.013 12 N -0.253 5.253 13 C -0.114 4.114 14 C 0.104 3.896 15 H 0.057 0.943 16 C -0.228 4.228 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.272 0.728 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.035 0.965 34 H 0.024 0.976 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.318 1.001 -6.604 11.465 hybrid contribution 1.070 -0.155 0.361 1.140 sum -8.249 0.846 -6.244 10.380 Atomic orbital electron populations 1.21913 0.93333 1.03242 1.01679 1.20374 0.95186 0.94281 0.86801 0.91060 1.22987 0.96956 0.80208 0.96764 1.21495 1.09555 1.00786 0.94268 1.21830 0.99219 0.89890 1.00824 1.20499 1.13948 0.92327 0.86993 1.18882 0.73636 0.83042 0.82100 1.90955 1.43281 1.86504 1.19288 1.84749 1.79647 1.17582 1.48996 1.84249 1.62620 1.24594 1.29851 1.62518 1.12007 1.51380 0.99367 1.22264 0.98334 0.96528 0.94282 1.19355 0.79562 0.92494 0.98150 0.94301 1.22397 1.04770 0.98109 0.97519 1.21008 0.91420 1.25827 1.15561 0.91885 1.24920 0.96726 0.95988 0.96576 1.69891 1.01550 1.42359 1.39491 0.86578 0.77337 0.81358 0.82240 1.20195 1.21420 1.20337 0.91529 0.92385 0.91261 0.82652 0.82292 0.72786 0.93244 0.90148 0.96495 0.97561 0.94702 0.89594 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.56 37.16 0.32 -1.63 16 2 C 0.14 2.45 2.33 -68.86 -0.16 2.29 16 3 H 0.07 1.19 6.42 -51.93 -0.33 0.85 16 4 C 0.09 1.56 4.58 -35.40 -0.16 1.39 16 5 C -0.24 -3.83 10.76 -39.90 -0.43 -4.26 16 6 C -0.10 -1.57 10.62 -39.38 -0.42 -1.99 16 7 C -0.09 -1.58 7.18 -36.85 -0.26 -1.84 16 8 C 0.58 9.68 8.30 34.05 0.28 9.96 16 9 O -0.51 -8.94 17.65 -19.36 -0.34 -9.28 16 10 O -0.50 -7.21 13.44 -42.48 -0.57 -7.79 16 11 O -0.12 -2.41 10.57 4.75 0.05 -2.36 16 12 N -0.53 -10.91 4.55 -229.69 -1.05 -11.96 16 13 C 0.03 0.62 7.85 60.07 0.47 1.09 16 14 C 0.21 5.18 2.16 -68.87 -0.15 5.03 16 15 H 0.04 1.09 6.76 -51.93 -0.35 0.74 16 16 C -0.17 -3.95 8.04 37.16 0.30 -3.65 16 17 C -0.50 -13.59 7.80 -34.44 -0.27 -13.86 16 18 H 0.06 1.71 7.15 -52.49 -0.38 1.34 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -25.50 11.40 55.43 0.63 -24.87 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.41 3.49 9.11 45.56 0.42 3.91 16 31 H 0.05 0.76 6.79 -51.93 -0.35 0.41 16 32 H 0.08 1.61 6.59 -51.93 -0.34 1.26 16 33 H 0.02 0.29 7.02 -51.93 -0.36 -0.08 16 34 H 0.01 0.12 6.40 -51.93 -0.33 -0.22 16 35 H 0.03 0.79 6.97 -51.93 -0.36 0.43 16 36 H 0.09 2.25 6.28 -51.93 -0.33 1.92 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -31.81 309.02 -6.12 -37.93 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.91 Total: 3.17 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.58 Total: -5.93 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.41 Total: -36.82 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.86 Total: -19.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.81 -6.12 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252554335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.766 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds