Wall clock time and date at job start Mon Mar 30 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52988 * 109.47590 * 239.99720 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09008 * 109.46861 * 35.00772 * 9 8 6 11 11 C 1.50700 * 109.46760 * 155.00060 * 9 8 6 12 12 H 1.07998 * 120.00298 * 0.02562 * 11 9 8 13 13 C 1.37881 * 119.99675 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00316 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99757 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46962 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47164 * 120.00122 * 15 13 11 18 18 H 1.48509 * 109.46731 * 240.00260 * 15 13 11 19 19 C 1.50701 * 109.47491 * 275.00673 * 9 8 6 20 20 C 1.34508 * 125.78948 * 139.71856 * 19 9 8 21 21 C 1.41386 * 106.84021 * 179.88669 * 20 19 9 22 22 C 1.34517 * 106.83564 * 0.37213 * 21 20 19 23 23 O 1.34296 * 108.42304 * 359.77198 * 22 21 20 24 24 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 25 25 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 26 26 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 29 29 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 30 30 H 1.09001 * 109.47346 * 300.00043 * 4 2 1 31 31 H 1.09005 * 109.47300 * 60.00004 * 4 2 1 32 32 H 1.09004 * 109.47621 * 180.02562 * 4 2 1 33 33 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 34 34 H 0.97000 * 120.00330 * 180.02562 * 14 13 11 35 35 H 1.08004 * 126.58071 * 0.02562 * 20 19 9 36 36 H 1.08000 * 126.57999 * 180.15986 * 21 20 19 37 37 H 1.08001 * 125.78293 * 179.75564 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 1.6183 -4.5485 1.6142 11 6 2.6734 -4.7717 3.4557 12 1 3.5262 -4.2332 3.8420 13 6 2.5080 -6.1073 3.7554 14 7 1.4698 -6.7632 3.2846 15 14 3.7585 -6.9853 4.8300 16 1 4.8253 -6.0319 5.2280 17 1 3.0852 -7.5107 6.0448 18 1 4.3596 -8.1113 4.0710 19 6 0.3087 -4.1237 3.2448 20 6 -0.6819 -4.9761 2.9262 21 6 -1.7648 -4.6861 3.7877 22 6 -1.3740 -3.6683 4.5757 23 8 -0.1173 -3.3318 4.2423 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7216 -1.2488 33 1 2.6225 -2.2349 3.0862 34 1 1.3532 -7.7028 3.4957 35 1 -0.6545 -5.7376 2.1608 36 1 -2.7231 -5.1837 3.8069 37 1 -1.9700 -3.2008 5.3456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258722605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:30 Heat of formation + Delta-G solvation = -91.759825 kcal Electronic energy + Delta-G solvation = -21154.485211 eV Core-core repulsion = 17897.969432 eV Total energy + Delta-G solvation = -3256.515779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.08402 -41.62710 -38.45555 -36.38726 -35.11412 -34.19963 -33.45839 -30.85617 -28.41430 -28.31669 -28.23538 -25.17881 -23.12756 -22.25856 -21.24074 -20.91620 -19.52020 -18.46133 -17.88295 -17.41468 -17.02588 -16.87106 -16.33112 -15.76308 -15.45991 -15.32749 -14.77593 -14.40866 -14.10839 -13.56561 -13.39397 -13.28891 -13.12411 -13.07734 -12.88004 -12.83716 -12.80156 -12.77908 -12.44233 -12.29476 -12.12812 -11.60919 -11.31695 -10.99277 -10.78817 -10.45200 -10.09821 -9.00151 -8.15149 -6.44697 1.13954 1.39280 1.44045 1.48766 1.57996 1.89998 2.16280 2.38998 2.52426 3.09648 3.43521 3.82819 3.85989 4.00837 4.28143 4.46543 4.56296 4.63213 4.65220 4.75062 4.80028 4.86557 4.92627 4.98788 5.12894 5.25555 5.30721 5.34379 5.42444 5.48156 5.53512 5.62003 5.66913 5.78876 5.98615 6.52043 6.70130 6.78562 7.24803 7.54951 8.80625 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.006373 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.981909 B = 4392.778465 C = 5184.466444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.598 6.598 8 N -0.690 5.690 9 C 0.372 3.628 10 H 0.043 0.957 11 C -0.559 4.559 12 H 0.081 0.919 13 C 0.026 3.974 14 N -0.890 5.890 15 Si 0.973 3.027 16 H -0.260 1.260 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.016 3.984 20 C -0.206 4.206 21 C -0.227 4.227 22 C -0.079 4.079 23 O -0.194 6.194 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 12.545 -2.669 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.083 3.917 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.397 3.603 7 O -0.490 6.490 8 N -0.347 5.347 9 C 0.269 3.731 10 H 0.061 0.939 11 C -0.596 4.596 12 H 0.099 0.901 13 C -0.178 4.178 14 N -0.524 5.524 15 Si 0.797 3.203 16 H -0.184 1.184 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.035 4.035 20 C -0.226 4.226 21 C -0.246 4.246 22 C -0.146 4.146 23 O -0.091 6.091 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.311 12.402 -3.020 12.832 hybrid contribution 0.312 -1.181 0.638 1.378 sum -1.000 11.221 -2.382 11.514 Atomic orbital electron populations 1.22455 0.94401 1.03207 1.03501 1.22469 0.94494 0.93073 0.81643 1.21863 1.02438 0.90069 1.04408 1.22464 1.01605 1.02003 0.97551 1.86301 1.71885 1.22809 1.47611 1.18299 0.78698 0.80818 0.82480 1.90848 1.42490 1.71030 1.44582 1.45069 1.54023 1.13053 1.22549 1.16932 0.85416 0.76072 0.94708 0.93927 1.21371 1.08525 0.95619 1.34085 0.90141 1.25771 0.97416 0.97799 0.96838 1.70182 1.28489 1.10124 1.43644 0.85276 0.78682 0.78372 0.77933 1.18379 1.20859 1.20295 1.23575 0.97186 0.92987 0.89794 1.21252 0.93915 1.02664 1.04760 1.22006 1.01016 1.01543 1.00083 1.24531 0.84416 1.01327 1.04293 1.83918 1.28858 1.51774 1.44595 0.92225 0.88504 0.92970 0.91094 0.87495 0.91254 0.92811 0.88539 0.91920 0.75629 0.92371 0.86413 0.82295 0.74939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.04 8.37 71.98 0.60 -4.44 16 2 C 0.12 3.36 1.13 -10.80 -0.01 3.35 16 3 C -0.13 -2.46 8.85 71.98 0.64 -1.83 16 4 C -0.18 -4.96 8.37 71.98 0.60 -4.36 16 5 O -0.37 -13.35 9.94 -55.47 -0.55 -13.90 16 6 C 0.64 28.01 8.01 129.79 1.04 29.05 16 7 O -0.60 -28.95 11.54 19.80 0.23 -28.73 16 8 N -0.69 -30.96 5.05 -577.33 -2.92 -33.88 16 9 C 0.37 19.42 2.42 43.50 0.11 19.52 16 10 H 0.04 2.54 7.57 -2.38 -0.02 2.52 16 11 C -0.56 -29.54 8.72 25.60 0.22 -29.32 16 12 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 13 C 0.03 1.36 5.30 84.66 0.45 1.81 16 14 N -0.89 -49.56 10.98 21.45 0.24 -49.32 16 15 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.02 0.85 5.47 24.83 0.14 0.98 16 20 C -0.21 -10.52 9.19 22.19 0.20 -10.31 16 21 C -0.23 -9.59 10.91 22.19 0.24 -9.34 16 22 C -0.08 -3.11 12.09 66.97 0.81 -2.30 16 23 O -0.19 -9.22 10.64 -2.39 -0.03 -9.25 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.05 1.91 5.88 -2.39 -0.01 1.89 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.92 5.88 -2.39 -0.01 1.90 16 31 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.41 16.37 8.65 -92.71 -0.80 15.57 16 34 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.12 6.39 7.88 -2.91 -0.02 6.37 16 36 H 0.16 5.53 8.06 -2.91 -0.02 5.51 16 37 H 0.23 6.35 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -66.50 312.86 4.31 -62.19 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.27 Total: 36.22 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.04 Total: -7.19 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.68 Total: -83.20 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.35 Total: -51.88 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -66.50 4.31 -62.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258722605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.568 kcal (2) G-P(sol) polarization free energy of solvation -66.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds