Wall clock time and date at job start Mon Mar 30 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48504 * 109.47127 * 266.16472 * 3 2 1 5 5 H 1.48503 * 109.46678 * 26.15998 * 3 2 1 6 6 H 1.48490 * 109.47521 * 146.16123 * 3 2 1 7 7 C 1.37877 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99952 * 6.09085 * 7 2 1 9 9 C 1.50708 * 120.00117 * 186.09089 * 7 2 1 10 10 H 1.08996 * 110.36615 * 333.07595 * 9 7 2 11 11 C 1.54262 * 110.32257 * 95.25898 * 9 7 2 12 12 C 1.54384 * 105.05818 * 118.89928 * 11 9 7 13 13 N 1.48558 * 104.59509 * 23.85036 * 12 11 9 14 14 C 1.46900 * 110.99702 * 200.96310 * 13 12 11 15 15 C 1.50697 * 109.47238 * 290.12262 * 14 13 12 16 16 C 1.38414 * 120.02952 * 269.73032 * 15 14 13 17 17 F 1.35105 * 120.00964 * 359.97438 * 16 15 14 18 18 C 1.38474 * 119.98004 * 179.78921 * 16 15 14 19 19 C 1.38209 * 120.01999 * 0.47992 * 18 16 15 20 20 C 1.38205 * 120.05294 * 359.75197 * 19 18 16 21 21 C 1.38419 * 120.02341 * 90.00011 * 15 14 13 22 22 F 1.35096 * 120.01353 * 0.02562 * 21 15 14 23 23 C 1.48564 * 104.22299 * 320.51412 * 13 12 11 24 24 H 0.96996 * 120.00009 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.32086 * 237.78928 * 11 9 7 26 26 H 1.08991 * 110.32397 * 359.90106 * 11 9 7 27 27 H 1.08999 * 110.40663 * 142.63116 * 12 11 9 28 28 H 1.09003 * 110.40384 * 265.07266 * 12 11 9 29 29 H 1.08992 * 109.47440 * 50.12835 * 14 13 12 30 30 H 1.09004 * 109.47201 * 170.12688 * 14 13 12 31 31 H 1.07999 * 119.99143 * 180.22816 * 18 16 15 32 32 H 1.08003 * 119.97321 * 179.76660 * 19 18 16 33 33 H 1.08005 * 119.99107 * 179.97438 * 20 19 18 34 34 H 1.08995 * 110.41462 * 280.70989 * 23 13 12 35 35 H 1.09008 * 110.41038 * 158.25706 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5779 1.9995 -1.3970 5 1 1.4084 2.6747 0.6173 6 1 3.5038 1.4649 0.7796 7 6 2.0045 -1.1941 0.0005 8 1 1.4690 -2.1268 -0.0983 9 6 3.5052 -1.1977 0.1390 10 1 3.9232 -0.2645 -0.2383 11 6 3.9066 -1.4072 1.6137 12 6 4.7207 -2.7189 1.6253 13 7 5.2387 -2.8503 0.2391 14 6 5.6015 -4.2426 -0.0574 15 6 6.8275 -4.6214 0.7327 16 6 8.0870 -4.4274 0.1926 17 9 8.2179 -3.8986 -1.0438 18 6 9.2130 -4.7718 0.9213 19 6 9.0792 -5.3184 2.1836 20 6 7.8220 -5.5171 2.7221 21 6 6.6947 -5.1690 1.9971 22 9 5.4659 -5.3645 2.5232 23 6 4.1104 -2.4005 -0.6163 24 1 -0.4850 0.8400 0.0004 25 1 4.5218 -0.5768 1.9602 26 1 3.0183 -1.5056 2.2375 27 1 5.5456 -2.6480 2.3343 28 1 4.0773 -3.5634 1.8724 29 1 4.7758 -4.8994 0.2159 30 1 5.8098 -4.3448 -1.1225 31 1 10.1960 -4.6171 0.5014 32 1 9.9579 -5.5903 2.7498 33 1 7.7186 -5.9447 3.7085 34 1 3.3715 -3.1951 -0.7199 35 1 4.4758 -2.0898 -1.5951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109136.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:19 Heat of formation + Delta-G solvation = -81.137148 kcal Electronic energy + Delta-G solvation = -20288.821698 eV Core-core repulsion = 16921.679037 eV Total energy + Delta-G solvation = -3367.142661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.04772 -49.94560 -40.28662 -39.28888 -35.38946 -33.88515 -31.40682 -31.22761 -30.10290 -27.34441 -25.59257 -23.82353 -23.08378 -21.77302 -21.09123 -19.19569 -19.02704 -18.29337 -17.42029 -17.03416 -16.61616 -16.53870 -16.35026 -16.26573 -15.60244 -15.53329 -15.15473 -14.74402 -14.60641 -14.05608 -13.69385 -13.30730 -13.13515 -12.98332 -12.91208 -12.61156 -12.59535 -12.15808 -12.15038 -12.10766 -11.73690 -11.44223 -10.97807 -10.69999 -9.96662 -9.71116 -9.48385 -8.31127 -6.34695 -0.00857 0.02277 1.35855 1.36606 1.48776 2.34817 2.38110 2.94429 3.03047 3.12671 3.43786 3.48793 3.67574 3.91457 3.92618 4.13849 4.25755 4.33267 4.40797 4.45833 4.51854 4.69846 4.84555 4.88167 4.92396 5.04584 5.07579 5.08544 5.12162 5.23300 5.28757 5.46125 5.60102 5.81856 5.86349 6.01143 6.30657 6.70586 7.30558 8.85643 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.004984 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.374398 B = 5617.012109 C = 5954.033372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.513 4.513 8 H 0.029 0.971 9 C 0.009 3.991 10 H 0.041 0.959 11 C -0.122 4.122 12 C 0.050 3.950 13 N -0.509 5.509 14 C 0.083 3.917 15 C -0.164 4.164 16 C 0.125 3.875 17 F -0.139 7.139 18 C -0.158 4.158 19 C -0.049 4.049 20 C -0.159 4.159 21 C 0.110 3.890 22 F -0.143 7.143 23 C 0.052 3.948 24 H 0.267 0.733 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.166 0.834 34 H 0.028 0.972 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.299 -11.137 5.132 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.183 4.183 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.552 4.552 8 H 0.047 0.953 9 C -0.010 4.010 10 H 0.059 0.941 11 C -0.161 4.161 12 C -0.078 4.078 13 N -0.233 5.233 14 C -0.045 4.045 15 C -0.166 4.166 16 C 0.105 3.895 17 F -0.117 7.117 18 C -0.177 4.177 19 C -0.067 4.067 20 C -0.178 4.178 21 C 0.091 3.909 22 F -0.122 7.122 23 C -0.076 4.076 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.186 0.814 32 H 0.203 0.797 33 H 0.183 0.817 34 H 0.046 0.954 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.569 -10.709 4.995 25.475 hybrid contribution -1.697 0.293 -0.299 1.748 sum 20.872 -10.416 4.696 23.794 Atomic orbital electron populations 1.70056 1.08272 1.28179 1.52346 1.25927 0.95430 1.03035 0.93909 0.85755 0.79343 0.78520 0.79471 1.19082 1.21261 1.17112 1.21215 0.91229 0.92987 1.49728 0.95277 1.19835 0.93580 0.94981 0.92642 0.94101 1.22588 0.98078 0.96510 0.98896 1.22988 0.97050 0.97043 0.90738 1.65496 1.35164 1.18776 1.03871 1.20969 0.93899 0.89697 0.99931 1.19785 0.95254 1.05427 0.96116 1.17477 0.93319 0.97434 0.81239 1.91498 1.96533 1.83932 1.39780 1.21580 0.98224 1.01851 0.96039 1.21328 0.97768 0.94043 0.93560 1.21553 0.90869 1.03231 1.02134 1.17606 0.80877 1.00635 0.91831 1.91498 1.41729 1.92885 1.86063 1.23067 0.90273 0.97208 0.97034 0.92445 0.92248 0.92905 0.90358 0.94647 0.94003 0.89209 0.81402 0.79674 0.81683 0.95366 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.95 44.90 27.07 68.60 1.86 46.76 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.25 -11.02 6.75 99.48 0.67 -10.34 16 7 C -0.51 -29.80 8.63 25.60 0.22 -29.58 16 8 H 0.03 1.88 7.90 -2.91 -0.02 1.86 16 9 C 0.01 0.44 2.61 -10.64 -0.03 0.41 16 10 H 0.04 1.95 5.41 -2.39 -0.01 1.94 16 11 C -0.12 -5.30 6.64 31.49 0.21 -5.10 16 12 C 0.05 1.88 4.93 86.45 0.43 2.30 16 13 N -0.51 -19.11 5.36 -886.03 -4.75 -23.86 16 14 C 0.08 2.68 4.64 85.56 0.40 3.08 16 15 C -0.16 -4.45 5.11 -19.78 -0.10 -4.55 16 16 C 0.13 2.97 7.24 22.37 0.16 3.13 16 17 F -0.14 -3.75 16.47 44.97 0.74 -3.01 16 18 C -0.16 -2.43 10.03 22.32 0.22 -2.21 16 19 C -0.05 -0.56 10.04 22.25 0.22 -0.34 16 20 C -0.16 -2.54 10.03 22.32 0.22 -2.32 16 21 C 0.11 2.69 6.52 22.37 0.15 2.84 16 22 F -0.14 -4.09 14.74 44.97 0.66 -3.42 16 23 C 0.05 2.21 6.02 86.45 0.52 2.73 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.05 2.45 7.70 -2.39 -0.02 2.44 16 27 H 0.08 2.68 7.82 -2.39 -0.02 2.66 16 28 H 0.04 1.39 6.88 -2.39 -0.02 1.37 16 29 H 0.04 1.41 7.38 -2.39 -0.02 1.39 16 30 H 0.09 2.78 7.62 -2.38 -0.02 2.76 16 31 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.19 0.53 8.06 -2.91 -0.02 0.50 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 35 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -68.82 293.53 2.96 -65.86 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.06 Total: 5.49 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.09 Total: -28.29 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -4.45 Total: -83.39 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 1.40 Total: -6.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.86 Total: 46.76 kcal Total: -68.82 2.96 -65.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109136.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.278 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds