Wall clock time and date at job start Mon Mar 30 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48498 * 109.47244 * 269.99729 * 3 2 1 5 5 H 1.48504 * 109.46973 * 29.99747 * 3 2 1 6 6 H 1.48500 * 109.46989 * 149.99468 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00036 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99950 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.87803 * 62.38676 * 9 7 2 11 11 C 1.55141 * 110.98826 * 298.54156 * 9 7 2 12 12 C 1.54313 * 103.02391 * 206.25524 * 11 9 7 13 13 N 1.47452 * 107.22949 * 22.28663 * 12 11 9 14 14 C 1.46897 * 110.99977 * 123.25690 * 13 12 11 15 15 C 1.50700 * 109.47300 * 69.87577 * 14 13 12 16 16 C 1.38230 * 119.98589 * 259.99915 * 15 14 13 17 17 C 1.38189 * 120.04916 * 179.97438 * 16 15 14 18 18 C 1.38495 * 120.02514 * 0.02562 * 17 16 15 19 19 F 1.35098 * 120.01184 * 179.97438 * 18 17 16 20 20 C 1.38397 * 119.97263 * 359.97438 * 18 17 16 21 21 C 1.38436 * 119.95229 * 359.97438 * 20 18 17 22 22 F 1.35100 * 120.01152 * 180.02562 * 21 20 18 23 23 C 1.47840 * 108.56672 * 0.99062 * 13 12 11 24 24 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.70251 * 87.87441 * 11 9 7 26 26 H 1.09000 * 110.70876 * 324.64276 * 11 9 7 27 27 H 1.08997 * 109.89392 * 262.88342 * 12 11 9 28 28 H 1.09004 * 110.02613 * 141.76172 * 12 11 9 29 29 H 1.09001 * 109.47410 * 309.87529 * 14 13 12 30 30 H 1.09003 * 109.47400 * 189.87104 * 14 13 12 31 31 H 1.08003 * 119.97556 * 359.97438 * 16 15 14 32 32 H 1.08008 * 119.98406 * 180.27419 * 17 16 15 33 33 H 1.08003 * 120.01699 * 179.97438 * 20 18 17 34 34 H 1.08998 * 110.37829 * 94.73309 * 23 13 12 35 35 H 1.09003 * 110.37521 * 217.07686 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8996 -0.7219 0.9035 11 6 4.0677 -0.5023 -1.2713 12 6 5.4512 -1.1623 -1.4493 13 7 5.4130 -2.4548 -0.7407 14 6 5.7431 -3.5623 -1.6476 15 6 7.2027 -3.4920 -2.0158 16 6 7.5839 -2.9504 -3.2291 17 6 8.9220 -2.8848 -3.5678 18 6 9.8828 -3.3623 -2.6920 19 9 11.1909 -3.2986 -3.0237 20 6 9.5022 -3.9048 -1.4770 21 6 8.1615 -3.9690 -1.1383 22 9 7.7887 -4.4979 0.0477 23 6 4.0664 -2.6318 -0.1566 24 1 -0.4850 0.8401 -0.0004 25 1 4.1704 0.5712 -1.1126 26 1 3.4297 -0.7066 -2.1311 27 1 6.2239 -0.5258 -1.0183 28 1 5.6533 -1.3257 -2.5079 29 1 5.1367 -3.4860 -2.5501 30 1 5.5388 -4.5112 -1.1517 31 1 6.8353 -2.5781 -3.9128 32 1 9.2189 -2.4574 -4.5142 33 1 10.2508 -4.2778 -0.7937 34 1 3.4340 -3.2110 -0.8294 35 1 4.1356 -3.1205 0.8153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260210747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:56 Heat of formation + Delta-G solvation = -59.795605 kcal Electronic energy + Delta-G solvation = -19962.276514 eV Core-core repulsion = 16596.059292 eV Total energy + Delta-G solvation = -3366.217222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.17907 -48.93937 -39.41276 -37.95944 -33.61584 -32.03295 -30.99725 -29.74505 -28.53106 -25.76372 -23.82814 -23.30509 -21.91550 -20.19173 -19.63660 -18.28520 -17.31129 -16.86366 -16.12741 -16.04189 -15.54243 -15.45174 -15.21081 -14.88514 -14.52454 -14.07393 -13.95164 -13.31881 -13.02172 -12.63315 -12.49727 -12.42701 -12.07591 -11.74276 -11.57007 -11.14269 -11.13014 -10.78701 -10.57332 -9.95383 -9.86223 -9.55221 -9.22742 -9.08535 -8.73621 -8.58877 -7.87200 -6.11635 -4.11479 0.79434 0.86005 3.18344 3.25517 3.35968 3.38222 3.73528 4.30223 4.37186 4.38829 4.49003 4.59225 4.73624 4.98691 5.19868 5.34446 5.41788 5.59751 5.66127 5.67747 5.79802 5.84522 5.87452 5.88432 6.12131 6.20781 6.23740 6.48595 6.61504 6.69038 6.78203 6.95210 7.35992 7.42589 7.54367 7.75401 8.46989 8.91058 9.50992 11.01453 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035384 B = 0.004459 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.123165 B = 6277.394567 C = 6643.851487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.012 3.988 10 H 0.040 0.960 11 C -0.150 4.150 12 C 0.044 3.956 13 N -0.529 5.529 14 C 0.088 3.912 15 C -0.113 4.113 16 C -0.057 4.057 17 C -0.165 4.165 18 C 0.122 3.878 19 F -0.136 7.136 20 C -0.197 4.197 21 C 0.153 3.847 22 F -0.122 7.122 23 C 0.058 3.942 24 H 0.264 0.736 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.045 0.955 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.986 -6.595 -6.974 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.007 4.007 10 H 0.058 0.942 11 C -0.189 4.189 12 C -0.084 4.084 13 N -0.253 5.253 14 C -0.040 4.040 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.184 4.184 18 C 0.102 3.898 19 F -0.114 7.114 20 C -0.216 4.216 21 C 0.133 3.867 22 F -0.100 7.100 23 C -0.068 4.068 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.064 0.936 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.216 -6.515 -6.534 20.419 hybrid contribution 0.041 0.924 -0.557 1.080 sum 18.257 -5.591 -7.091 20.368 Atomic orbital electron populations 1.69900 1.06305 1.27004 1.50662 1.24971 0.94632 0.99008 0.94281 0.86897 0.80087 0.83624 0.78324 1.20457 1.22105 1.18882 1.20910 0.88342 0.94561 1.51207 0.90752 1.20253 0.96410 0.90855 0.93200 0.94193 1.23221 0.94716 0.99179 1.01767 1.22822 0.98506 0.91017 0.96023 1.63681 1.30021 1.00861 1.30721 1.21101 0.89625 0.96780 0.96451 1.20076 0.96493 1.00587 0.94308 1.20862 0.95382 0.95922 0.95435 1.21142 0.92560 1.03900 1.00829 1.17271 0.78131 1.00356 0.94028 1.91514 1.33108 1.94303 1.92504 1.21005 0.95928 1.06547 0.98154 1.17082 0.91448 0.96138 0.82020 1.91550 1.91963 1.83238 1.43254 1.23016 0.85682 0.99728 0.98409 0.92613 0.92817 0.91383 0.91695 0.93754 0.93092 0.89727 0.84098 0.84198 0.83645 0.93612 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.88 21.53 24.53 -169.99 -4.17 17.36 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.23 6.48 56.52 0.37 -5.87 16 7 C -0.51 -14.06 9.13 -34.44 -0.31 -14.37 16 8 H 0.07 2.20 8.03 -52.49 -0.42 1.78 16 9 C 0.01 0.28 2.41 -89.63 -0.22 0.07 16 10 H 0.04 0.97 7.41 -51.93 -0.39 0.58 16 11 C -0.15 -3.11 5.09 -24.91 -0.13 -3.24 16 12 C 0.04 0.76 6.40 -2.83 -0.02 0.74 16 13 N -0.53 -9.15 5.15 -232.69 -1.20 -10.34 16 14 C 0.09 1.25 4.42 -4.98 -0.02 1.23 16 15 C -0.11 -1.42 4.95 -104.55 -0.52 -1.94 16 16 C -0.06 -0.60 8.82 -39.60 -0.35 -0.95 16 17 C -0.17 -1.60 10.03 -39.50 -0.40 -2.00 16 18 C 0.12 1.30 7.30 -39.43 -0.29 1.02 16 19 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 20 C -0.20 -2.18 10.01 -39.45 -0.39 -2.57 16 21 C 0.15 1.95 7.24 -39.43 -0.29 1.67 16 22 F -0.12 -1.72 16.66 2.25 0.04 -1.69 16 23 C 0.06 1.15 6.12 -2.30 -0.01 1.13 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.05 1.13 5.12 -51.93 -0.27 0.87 16 26 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.65 6.19 -51.93 -0.32 0.33 16 29 H 0.05 0.68 7.82 -51.93 -0.41 0.28 16 30 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 31 H 0.14 1.24 7.65 -52.48 -0.40 0.84 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -29.52 292.17 -7.44 -36.96 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.29 Total: -1.58 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -3.04 Total: -17.25 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.42 Total: -36.77 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.17 Total: 17.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.52 -7.44 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.834 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds