Wall clock time and date at job start Mon Mar 30 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48498 * 109.47244 * 269.99729 * 3 2 1 5 5 H 1.48504 * 109.46973 * 29.99747 * 3 2 1 6 6 H 1.48500 * 109.46989 * 149.99468 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00036 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99950 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.87803 * 62.38676 * 9 7 2 11 11 C 1.55141 * 110.98826 * 298.54156 * 9 7 2 12 12 C 1.54313 * 103.02391 * 206.25524 * 11 9 7 13 13 N 1.47452 * 107.22949 * 22.28663 * 12 11 9 14 14 C 1.46897 * 110.99977 * 123.25690 * 13 12 11 15 15 C 1.50700 * 109.47300 * 69.87577 * 14 13 12 16 16 C 1.38230 * 119.98589 * 259.99915 * 15 14 13 17 17 C 1.38189 * 120.04916 * 179.97438 * 16 15 14 18 18 C 1.38495 * 120.02514 * 0.02562 * 17 16 15 19 19 F 1.35098 * 120.01184 * 179.97438 * 18 17 16 20 20 C 1.38397 * 119.97263 * 359.97438 * 18 17 16 21 21 C 1.38436 * 119.95229 * 359.97438 * 20 18 17 22 22 F 1.35100 * 120.01152 * 180.02562 * 21 20 18 23 23 C 1.47840 * 108.56672 * 0.99062 * 13 12 11 24 24 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.70251 * 87.87441 * 11 9 7 26 26 H 1.09000 * 110.70876 * 324.64276 * 11 9 7 27 27 H 1.08997 * 109.89392 * 262.88342 * 12 11 9 28 28 H 1.09004 * 110.02613 * 141.76172 * 12 11 9 29 29 H 1.09001 * 109.47410 * 309.87529 * 14 13 12 30 30 H 1.09003 * 109.47400 * 189.87104 * 14 13 12 31 31 H 1.08003 * 119.97556 * 359.97438 * 16 15 14 32 32 H 1.08008 * 119.98406 * 180.27419 * 17 16 15 33 33 H 1.08003 * 120.01699 * 179.97438 * 20 18 17 34 34 H 1.08998 * 110.37829 * 94.73309 * 23 13 12 35 35 H 1.09003 * 110.37521 * 217.07686 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8996 -0.7219 0.9035 11 6 4.0677 -0.5023 -1.2713 12 6 5.4512 -1.1623 -1.4493 13 7 5.4130 -2.4548 -0.7407 14 6 5.7431 -3.5623 -1.6476 15 6 7.2027 -3.4920 -2.0158 16 6 7.5839 -2.9504 -3.2291 17 6 8.9220 -2.8848 -3.5678 18 6 9.8828 -3.3623 -2.6920 19 9 11.1909 -3.2986 -3.0237 20 6 9.5022 -3.9048 -1.4770 21 6 8.1615 -3.9690 -1.1383 22 9 7.7887 -4.4979 0.0477 23 6 4.0664 -2.6318 -0.1566 24 1 -0.4850 0.8401 -0.0004 25 1 4.1704 0.5712 -1.1126 26 1 3.4297 -0.7066 -2.1311 27 1 6.2239 -0.5258 -1.0183 28 1 5.6533 -1.3257 -2.5079 29 1 5.1367 -3.4860 -2.5501 30 1 5.5388 -4.5112 -1.1517 31 1 6.8353 -2.5781 -3.9128 32 1 9.2189 -2.4574 -4.5142 33 1 10.2508 -4.2778 -0.7937 34 1 3.4340 -3.2110 -0.8294 35 1 4.1356 -3.1205 0.8153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260210747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:56 Heat of formation + Delta-G solvation = -78.012298 kcal Electronic energy + Delta-G solvation = -19963.066449 eV Core-core repulsion = 16596.059292 eV Total energy + Delta-G solvation = -3367.007157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.99907 -49.92370 -40.49413 -39.22701 -35.30299 -33.69223 -31.85814 -31.06343 -30.11629 -27.16143 -25.47550 -24.16477 -22.95985 -21.54378 -21.42605 -19.16584 -18.83956 -18.20661 -17.17504 -16.95393 -16.88605 -16.50835 -16.39224 -16.24081 -15.69553 -15.42470 -14.92034 -14.80900 -14.50611 -14.28637 -13.89212 -13.55733 -13.20140 -12.97515 -12.89226 -12.65930 -12.46341 -12.25471 -12.18224 -11.70504 -11.55773 -11.35735 -11.10699 -10.73108 -10.05355 -9.63662 -9.23106 -8.30750 -6.35099 -0.06759 0.04380 1.31730 1.37192 1.47212 2.32873 2.33571 2.89380 3.04440 3.19305 3.45864 3.58751 3.63837 3.93068 3.96664 4.05489 4.15337 4.34873 4.45610 4.54449 4.62913 4.74279 4.83872 4.86342 4.88919 4.98056 5.01745 5.06809 5.16749 5.24960 5.31568 5.57251 5.65147 5.78187 5.99449 6.18177 6.31256 6.70867 7.31114 8.85931 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035384 B = 0.004459 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.123165 B = 6277.394567 C = 6643.851487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.516 4.516 8 H 0.035 0.965 9 C 0.004 3.996 10 H 0.031 0.969 11 C -0.147 4.147 12 C 0.052 3.948 13 N -0.533 5.533 14 C 0.089 3.911 15 C -0.124 4.124 16 C -0.053 4.053 17 C -0.153 4.153 18 C 0.118 3.882 19 F -0.137 7.137 20 C -0.197 4.197 21 C 0.133 3.867 22 F -0.137 7.137 23 C 0.068 3.932 24 H 0.266 0.734 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.039 0.961 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.632 -5.725 -8.640 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.174 1.174 7 C -0.554 4.554 8 H 0.053 0.947 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.186 4.186 12 C -0.076 4.076 13 N -0.257 5.257 14 C -0.039 4.039 15 C -0.125 4.125 16 C -0.071 4.071 17 C -0.172 4.172 18 C 0.098 3.902 19 F -0.115 7.115 20 C -0.216 4.216 21 C 0.113 3.887 22 F -0.116 7.116 23 C -0.059 4.059 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.174 0.826 34 H 0.057 0.943 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.891 -5.665 -8.210 23.150 hybrid contribution -0.777 0.541 -0.049 0.949 sum 20.114 -5.123 -8.259 22.339 Atomic orbital electron populations 1.70047 1.08224 1.28073 1.52643 1.25824 0.95332 1.02909 0.94027 0.85885 0.79086 0.78730 0.79287 1.18614 1.22364 1.17365 1.21181 0.90898 0.93074 1.50245 0.94688 1.20178 0.93502 0.93605 0.94243 0.95125 1.23092 0.96629 0.99200 0.99670 1.22801 0.96216 0.90526 0.98024 1.63643 1.27778 1.02094 1.32190 1.21117 0.91156 0.95441 0.96181 1.19996 0.95193 1.01962 0.95389 1.21085 0.96258 0.95072 0.94736 1.21432 0.91865 1.02461 1.01420 1.17413 0.78337 1.00343 0.94088 1.91518 1.33252 1.94294 1.92463 1.21117 0.95556 1.06259 0.98690 1.17292 0.92267 0.97258 0.81874 1.91510 1.92160 1.83688 1.44208 1.22773 0.87015 0.97480 0.98605 0.92503 0.92786 0.92247 0.90855 0.90680 0.91934 0.90060 0.81961 0.81440 0.82557 0.94291 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.94 44.11 24.53 68.60 1.68 45.79 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.25 -10.98 6.48 99.48 0.64 -10.34 16 7 C -0.52 -29.06 9.13 25.60 0.23 -28.82 16 8 H 0.03 2.18 8.03 -2.91 -0.02 2.15 16 9 C 0.00 0.19 2.41 -10.15 -0.02 0.17 16 10 H 0.03 1.46 7.41 -2.39 -0.02 1.45 16 11 C -0.15 -5.81 5.09 31.77 0.16 -5.64 16 12 C 0.05 1.61 6.40 86.64 0.55 2.17 16 13 N -0.53 -17.44 5.15 -890.09 -4.58 -22.02 16 14 C 0.09 2.32 4.42 85.56 0.38 2.70 16 15 C -0.12 -2.78 4.95 -19.82 -0.10 -2.88 16 16 C -0.05 -0.90 8.82 22.26 0.20 -0.70 16 17 C -0.15 -2.33 10.03 22.32 0.22 -2.11 16 18 C 0.12 2.16 7.30 22.37 0.16 2.32 16 19 F -0.14 -2.59 17.27 44.97 0.78 -1.81 16 20 C -0.20 -3.94 10.01 22.35 0.22 -3.72 16 21 C 0.13 3.16 7.24 22.37 0.16 3.32 16 22 F -0.14 -3.80 16.66 44.97 0.75 -3.05 16 23 C 0.07 2.69 6.12 86.78 0.53 3.22 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.05 2.11 5.12 -2.39 -0.01 2.10 16 26 H 0.06 2.42 8.03 -2.39 -0.02 2.40 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 1.88 6.19 -2.38 -0.01 1.87 16 29 H 0.06 1.50 7.82 -2.39 -0.02 1.48 16 30 H 0.08 2.17 7.88 -2.39 -0.02 2.15 16 31 H 0.16 2.04 7.65 -2.91 -0.02 2.02 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.04 1.56 7.70 -2.39 -0.02 1.54 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -64.72 292.17 3.13 -61.59 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.04 Total: 6.69 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.17 Total: -28.57 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -4.28 Total: -80.65 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 1.53 Total: -4.86 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.68 Total: 45.79 kcal Total: -64.72 3.13 -61.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.420 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds