Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76194 * 99.99939 * 2 1 4 4 C 1.39757 * 120.49398 * 179.97438 * 3 2 1 5 5 C 1.38047 * 118.48879 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.35303 * 180.02562 * 5 4 3 7 7 N 1.32548 * 119.30036 * 0.02562 * 5 4 3 8 8 C 1.32484 * 120.94444 * 359.97438 * 7 5 4 9 9 N 1.38398 * 119.17169 * 179.97438 * 8 7 5 10 10 C 1.46505 * 120.00224 * 359.97438 * 9 8 7 11 11 C 1.46502 * 119.99716 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47294 * 89.99911 * 11 9 8 13 13 C 1.50702 * 109.47381 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00304 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99795 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00048 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46667 * 89.99990 * 17 15 13 19 19 H 1.48493 * 109.47090 * 209.99908 * 17 15 13 20 20 H 1.48503 * 109.46965 * 330.00565 * 17 15 13 21 21 N 1.32453 * 121.65165 * 359.97438 * 8 7 5 22 22 H 1.08996 * 109.47251 * 60.00206 * 1 2 3 23 23 H 1.09003 * 109.47144 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47110 * 299.99705 * 1 2 3 25 25 H 1.07997 * 120.75639 * 0.02562 * 4 3 2 26 26 H 1.09000 * 109.47305 * 269.97939 * 6 5 4 27 27 H 1.09003 * 109.46937 * 29.97653 * 6 5 4 28 28 H 1.09003 * 109.47728 * 149.97698 * 6 5 4 29 29 H 1.09000 * 109.46809 * 90.00285 * 10 9 8 30 30 H 1.09000 * 109.47115 * 209.99492 * 10 9 8 31 31 H 1.08997 * 109.46819 * 330.00281 * 10 9 8 32 32 H 1.09005 * 109.46987 * 209.99758 * 11 9 8 33 33 H 1.08999 * 109.47304 * 329.99660 * 11 9 8 34 34 H 1.08997 * 109.47127 * 300.00129 * 12 11 9 35 35 H 1.09004 * 109.47244 * 60.00390 * 12 11 9 36 36 H 0.96992 * 119.99543 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4251 2.2245 0.0005 5 6 3.6170 3.5915 0.0011 6 6 5.0107 4.1648 0.0011 7 7 2.5626 4.3947 0.0016 8 6 1.3322 3.9035 0.0010 9 7 0.2576 4.7757 0.0021 10 6 0.4885 6.2225 0.0044 11 6 -1.1107 4.2522 0.0021 12 6 -1.5865 4.0688 1.4446 13 6 -2.9943 3.5309 1.4446 14 1 -3.4989 3.3387 0.5092 15 6 -3.6377 3.2832 2.6387 16 7 -3.0229 3.5167 3.7776 17 14 -5.3824 2.6157 2.6387 18 1 -5.3444 1.1312 2.6368 19 1 -6.0942 3.0912 3.8520 20 1 -6.0953 3.0941 1.4269 21 7 1.1046 2.5987 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.2673 1.5485 0.0005 26 1 5.3468 4.3030 1.0287 27 1 5.6853 3.4799 -0.5128 28 1 5.0083 5.1261 -0.5127 29 1 0.5459 6.5828 -1.0227 30 1 -0.3333 6.7207 0.5187 31 1 1.4245 6.4402 0.5187 32 1 -1.7682 4.9541 -0.5109 33 1 -1.1322 3.2917 -0.5125 34 1 -0.9290 3.3670 1.9576 35 1 -1.5651 5.0294 1.9592 36 1 -3.4757 3.3428 4.6176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232894.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = 47.438959 kcal Electronic energy + Delta-G solvation = -18159.350098 eV Core-core repulsion = 15383.916054 eV Total energy + Delta-G solvation = -2775.434044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52157 -36.68049 -33.99744 -33.22236 -31.55604 -29.69929 -28.74051 -28.33908 -26.26858 -24.75635 -23.13762 -22.06908 -20.17636 -17.73930 -17.13859 -16.39990 -15.73146 -15.21198 -15.17442 -14.50873 -14.01744 -13.85401 -13.62211 -13.35201 -13.25779 -12.64705 -12.57177 -12.47036 -12.27476 -12.00306 -11.70660 -11.34979 -10.96687 -10.78056 -10.70498 -10.61367 -10.47452 -10.09391 -9.90988 -9.48643 -9.22906 -8.72606 -8.38749 -7.74719 -7.27290 -6.03625 -4.07283 1.33831 1.54690 1.66495 2.33274 3.23320 3.28917 3.35769 3.38804 4.16015 4.42063 4.42576 4.95098 5.15213 5.32305 5.41018 5.42537 5.48545 5.55378 5.59028 5.71050 5.82475 5.84399 5.86845 6.09131 6.14155 6.25635 6.47407 6.57477 6.84467 7.17191 7.26751 7.61754 7.71287 7.94716 7.98714 8.33968 8.67875 8.99692 9.56673 11.07579 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.005997 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.263227 B = 4667.682169 C = 5748.169517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.072 6.072 3 C 0.210 3.790 4 C -0.286 4.286 5 C 0.224 3.776 6 C -0.100 4.100 7 N -0.584 5.584 8 C 0.587 3.413 9 N -0.577 5.577 10 C 0.104 3.896 11 C 0.131 3.869 12 C 0.015 3.985 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 N -0.562 5.562 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.139 0.861 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.020 0.980 35 H 0.013 0.987 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -1.847 -8.476 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.165 5.835 3 C -0.051 4.051 4 C -0.319 4.319 5 C 0.075 3.925 6 C -0.158 4.158 7 N -0.310 5.310 8 C 0.229 3.771 9 N -0.291 5.291 10 C -0.039 4.039 11 C 0.010 3.990 12 C -0.023 4.023 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.289 5.289 22 H 0.108 0.892 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.156 0.844 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.475 -2.076 -8.296 15.125 hybrid contribution -1.254 0.117 0.263 1.287 sum 11.220 -1.959 -8.033 13.938 Atomic orbital electron populations 1.23470 0.92386 1.05809 1.08203 1.85425 1.09560 0.97889 1.90615 1.23119 0.91331 0.98435 0.92175 1.21718 0.96747 0.96740 1.16720 1.21149 0.94571 0.89265 0.87532 1.20711 0.89892 1.01841 1.03351 1.67771 0.97956 1.40019 1.25240 1.19179 0.85823 0.85117 0.86984 1.46525 1.03856 1.04243 1.74458 1.21558 1.02633 0.78951 1.00790 1.21903 0.77170 0.98493 1.01463 1.19382 0.95926 0.97208 0.89753 1.21067 0.98769 1.43565 0.92388 0.92572 1.24991 0.98004 0.95602 0.95583 1.69980 1.37385 1.48491 0.97296 0.86590 0.84629 0.79226 0.77535 1.20620 1.21234 1.19821 1.68282 1.33597 1.02263 1.24744 0.89211 0.88416 0.88099 0.84358 0.89940 0.90407 0.90285 0.93662 0.91060 0.90739 0.91811 0.90785 0.96154 0.96817 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.68 101.05 0.98 -0.96 16 2 S -0.07 -1.05 22.74 -107.50 -2.44 -3.49 16 3 C 0.21 3.63 7.01 -16.49 -0.12 3.52 16 4 C -0.29 -4.31 9.61 -39.08 -0.38 -4.68 16 5 C 0.22 3.37 6.81 -82.36 -0.56 2.80 16 6 C -0.10 -1.01 10.21 36.00 0.37 -0.64 16 7 N -0.58 -10.47 9.04 -10.25 -0.09 -10.57 16 8 C 0.59 11.73 8.18 -322.88 -2.64 9.09 16 9 N -0.58 -11.36 2.97 -183.95 -0.55 -11.91 16 10 C 0.10 1.68 10.44 59.85 0.62 2.30 16 11 C 0.13 2.80 5.35 -4.04 -0.02 2.78 16 12 C 0.02 0.40 5.30 -27.89 -0.15 0.26 16 13 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 N -0.56 -11.19 7.97 -12.71 -0.10 -11.29 16 22 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 23 H 0.10 1.18 8.14 -51.91 -0.42 0.76 16 24 H 0.10 1.81 8.14 -51.91 -0.42 1.38 16 25 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.07 1.18 7.33 -51.93 -0.38 0.80 16 32 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.07 1.61 7.33 -51.93 -0.38 1.23 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -31.94 322.15 -10.28 -42.22 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.37 Total: -1.37 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.30 Total: 1.32 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.00 Total: -59.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.44 Total: -3.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.94 -10.28 -42.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232894.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.661 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds