Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76194 * 99.99939 * 2 1 4 4 C 1.39757 * 120.49398 * 179.97438 * 3 2 1 5 5 C 1.38047 * 118.48879 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.35303 * 180.02562 * 5 4 3 7 7 N 1.32548 * 119.30036 * 0.02562 * 5 4 3 8 8 C 1.32484 * 120.94444 * 359.97438 * 7 5 4 9 9 N 1.38398 * 119.17169 * 179.97438 * 8 7 5 10 10 C 1.46505 * 120.00224 * 359.97438 * 9 8 7 11 11 C 1.46502 * 119.99716 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47294 * 89.99911 * 11 9 8 13 13 C 1.50702 * 109.47381 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00304 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99795 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00048 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46667 * 89.99990 * 17 15 13 19 19 H 1.48493 * 109.47090 * 209.99908 * 17 15 13 20 20 H 1.48503 * 109.46965 * 330.00565 * 17 15 13 21 21 N 1.32453 * 121.65165 * 359.97438 * 8 7 5 22 22 H 1.08996 * 109.47251 * 60.00206 * 1 2 3 23 23 H 1.09003 * 109.47144 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47110 * 299.99705 * 1 2 3 25 25 H 1.07997 * 120.75639 * 0.02562 * 4 3 2 26 26 H 1.09000 * 109.47305 * 269.97939 * 6 5 4 27 27 H 1.09003 * 109.46937 * 29.97653 * 6 5 4 28 28 H 1.09003 * 109.47728 * 149.97698 * 6 5 4 29 29 H 1.09000 * 109.46809 * 90.00285 * 10 9 8 30 30 H 1.09000 * 109.47115 * 209.99492 * 10 9 8 31 31 H 1.08997 * 109.46819 * 330.00281 * 10 9 8 32 32 H 1.09005 * 109.46987 * 209.99758 * 11 9 8 33 33 H 1.08999 * 109.47304 * 329.99660 * 11 9 8 34 34 H 1.08997 * 109.47127 * 300.00129 * 12 11 9 35 35 H 1.09004 * 109.47244 * 60.00390 * 12 11 9 36 36 H 0.96992 * 119.99543 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4251 2.2245 0.0005 5 6 3.6170 3.5915 0.0011 6 6 5.0107 4.1648 0.0011 7 7 2.5626 4.3947 0.0016 8 6 1.3322 3.9035 0.0010 9 7 0.2576 4.7757 0.0021 10 6 0.4885 6.2225 0.0044 11 6 -1.1107 4.2522 0.0021 12 6 -1.5865 4.0688 1.4446 13 6 -2.9943 3.5309 1.4446 14 1 -3.4989 3.3387 0.5092 15 6 -3.6377 3.2832 2.6387 16 7 -3.0229 3.5167 3.7776 17 14 -5.3824 2.6157 2.6387 18 1 -5.3444 1.1312 2.6368 19 1 -6.0942 3.0912 3.8520 20 1 -6.0953 3.0941 1.4269 21 7 1.1046 2.5987 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.2673 1.5485 0.0005 26 1 5.3468 4.3030 1.0287 27 1 5.6853 3.4799 -0.5128 28 1 5.0083 5.1261 -0.5127 29 1 0.5459 6.5828 -1.0227 30 1 -0.3333 6.7207 0.5187 31 1 1.4245 6.4402 0.5187 32 1 -1.7682 4.9541 -0.5109 33 1 -1.1322 3.2917 -0.5125 34 1 -0.9290 3.3670 1.9576 35 1 -1.5651 5.0294 1.9592 36 1 -3.4757 3.3428 4.6176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232894.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = 30.610666 kcal Electronic energy + Delta-G solvation = -18160.079828 eV Core-core repulsion = 15383.916054 eV Total energy + Delta-G solvation = -2776.163774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83471 -38.17667 -35.27992 -35.24221 -33.04889 -31.46211 -29.93189 -29.48048 -27.78019 -26.51933 -24.37920 -23.82306 -21.77469 -19.06289 -18.76325 -18.19243 -17.12476 -16.74280 -16.39026 -16.35098 -15.57403 -15.10567 -14.97119 -14.60556 -14.52154 -14.24309 -14.16921 -13.70828 -13.43657 -13.37508 -13.08665 -12.92040 -12.84242 -12.56137 -12.06749 -11.96925 -11.87611 -11.77766 -11.74615 -11.36412 -10.95375 -10.58876 -10.06849 -9.06796 -8.61615 -8.21567 -6.34604 0.03820 0.27705 0.45075 1.09764 1.39405 1.40910 1.52116 1.83911 2.40313 2.83485 3.11758 3.27371 3.67427 3.95801 4.24094 4.28632 4.30154 4.35842 4.41487 4.51608 4.53265 4.76592 4.81057 4.85865 4.88385 4.93548 4.98463 5.02411 5.38394 5.43931 5.52924 5.70660 5.88618 5.94064 6.20378 6.51067 6.81635 7.31153 7.35360 8.90080 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.005997 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.263227 B = 4667.682169 C = 5748.169517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.031 6.031 3 C 0.176 3.824 4 C -0.279 4.279 5 C 0.214 3.786 6 C -0.094 4.094 7 N -0.593 5.593 8 C 0.564 3.436 9 N -0.591 5.591 10 C 0.107 3.893 11 C 0.152 3.848 12 C 0.032 3.968 13 C -0.535 4.535 14 H 0.067 0.933 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.259 1.259 21 N -0.594 5.594 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.064 0.936 25 H 0.173 0.827 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.067 0.933 34 H -0.022 1.022 35 H -0.014 1.014 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.632 -2.575 -9.649 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.206 5.794 3 C -0.082 4.082 4 C -0.311 4.311 5 C 0.066 3.934 6 C -0.152 4.152 7 N -0.320 5.320 8 C 0.205 3.795 9 N -0.306 5.306 10 C -0.036 4.036 11 C 0.029 3.971 12 C -0.007 4.007 13 C -0.574 4.574 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.182 1.182 21 N -0.322 5.322 22 H 0.101 0.899 23 H 0.146 0.854 24 H 0.083 0.917 25 H 0.190 0.810 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.085 0.915 34 H -0.003 1.003 35 H 0.004 0.996 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.336 -2.819 -9.491 16.609 hybrid contribution -1.356 0.296 0.647 1.531 sum 11.980 -2.523 -8.844 15.103 Atomic orbital electron populations 1.23415 0.93363 1.07068 1.05992 1.85142 1.08372 0.95738 1.90125 1.23754 0.92163 0.99590 0.92717 1.22168 0.96768 0.97478 1.14656 1.22061 0.95863 0.89522 0.85938 1.20858 0.87081 1.02572 1.04654 1.67852 0.97840 1.40689 1.25595 1.19446 0.86633 0.85403 0.88004 1.46501 1.03142 1.05441 1.75542 1.21653 1.02515 0.77240 1.02172 1.21438 0.78822 0.98846 0.97953 1.19149 0.94973 0.94302 0.92250 1.21487 0.99539 1.43354 0.92972 0.91525 1.25972 1.02795 0.95708 0.95036 1.70135 1.39519 1.49792 0.98086 0.85417 0.78800 0.78645 0.78009 1.19803 1.20958 1.18243 1.68256 1.35126 1.02777 1.26013 0.89884 0.85426 0.91713 0.80988 0.88588 0.87336 0.89849 0.91425 0.91201 0.90706 0.90150 0.91495 1.00344 0.99597 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.68 113.37 1.10 -2.80 16 2 S -0.03 -0.88 22.74 -56.49 -1.28 -2.16 16 3 C 0.18 6.04 7.01 84.89 0.59 6.63 16 4 C -0.28 -7.87 9.61 22.59 0.22 -7.65 16 5 C 0.21 6.08 6.81 42.40 0.29 6.37 16 6 C -0.09 -1.61 10.21 71.23 0.73 -0.88 16 7 N -0.59 -21.07 9.04 -186.33 -1.69 -22.75 16 8 C 0.56 22.95 8.18 261.51 2.14 25.09 16 9 N -0.59 -23.84 2.97 -735.89 -2.19 -26.03 16 10 C 0.11 3.45 10.44 127.77 1.33 4.79 16 11 C 0.15 6.69 5.35 86.38 0.46 7.15 16 12 C 0.03 1.73 5.30 29.85 0.16 1.89 16 13 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 14 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 17 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 N -0.59 -24.26 7.97 -194.12 -1.55 -25.81 16 22 H 0.08 2.59 8.14 -2.40 -0.02 2.58 16 23 H 0.13 2.96 8.14 -2.39 -0.02 2.95 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.07 2.38 7.33 -2.39 -0.02 2.36 16 32 H 0.08 3.22 8.07 -2.38 -0.02 3.20 16 33 H 0.07 3.02 7.33 -2.39 -0.02 3.00 16 34 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 35 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -71.57 322.15 4.37 -67.20 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.06 Total: 10.08 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.71 Total: 11.03 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -5.14 Total: -132.30 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.28 Total: -2.16 kcal Total: -71.57 4.37 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232894.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.811 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds