Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76201 * 100.00032 * 2 1 4 4 C 1.39748 * 120.49503 * 180.02562 * 3 2 1 5 5 C 1.38048 * 118.48879 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.35152 * 180.02562 * 5 4 3 7 7 N 1.32543 * 119.29944 * 0.02562 * 5 4 3 8 8 C 1.32482 * 120.94618 * 359.97438 * 7 5 4 9 9 N 1.38401 * 119.17246 * 180.02562 * 8 7 5 10 10 C 1.46499 * 120.00242 * 359.97438 * 9 8 7 11 11 C 1.46502 * 119.99696 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47396 * 0.02562 * 11 9 8 13 13 C 1.53008 * 109.47134 * 119.99510 * 11 9 8 14 14 C 1.50699 * 109.47062 * 239.99385 * 11 9 8 15 15 H 1.07992 * 119.99978 * 0.02562 * 14 11 9 16 16 C 1.37876 * 119.99781 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99924 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00053 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.46757 * 90.00204 * 18 16 14 20 20 H 1.48492 * 109.47372 * 210.00144 * 18 16 14 21 21 H 1.48502 * 109.47053 * 330.00883 * 18 16 14 22 22 N 1.32450 * 121.64905 * 0.27567 * 8 7 5 23 23 H 1.09001 * 109.46869 * 299.99620 * 1 2 3 24 24 H 1.08998 * 109.47376 * 59.99674 * 1 2 3 25 25 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.08009 * 120.75735 * 0.02562 * 4 3 2 27 27 H 1.08999 * 109.46734 * 269.98138 * 6 5 4 28 28 H 1.08995 * 109.46749 * 29.97239 * 6 5 4 29 29 H 1.08993 * 109.47145 * 149.97506 * 6 5 4 30 30 H 1.09002 * 109.47391 * 270.00412 * 10 9 8 31 31 H 1.09001 * 109.46813 * 150.00468 * 10 9 8 32 32 H 1.09004 * 109.47041 * 30.00595 * 10 9 8 33 33 H 1.09000 * 109.46982 * 179.97438 * 13 11 9 34 34 H 1.09002 * 109.47164 * 300.00444 * 13 11 9 35 35 H 1.09003 * 109.46815 * 59.99801 * 13 11 9 36 36 H 0.97005 * 119.99751 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4249 2.2245 -0.0005 5 6 3.6169 3.5916 -0.0011 6 6 5.0107 4.1649 -0.0022 7 7 2.5625 4.3947 -0.0005 8 6 1.3321 3.9035 0.0000 9 7 0.2575 4.7758 0.0000 10 6 0.4883 6.2225 0.0000 11 6 -1.1108 4.2523 0.0012 12 1 -1.0830 3.1626 0.0024 13 6 -1.8441 4.7445 1.2506 14 6 -1.8345 4.7356 -1.2291 15 1 -1.3260 5.3689 -1.9409 16 6 -3.1456 4.3683 -1.4465 17 7 -3.7646 3.5966 -0.5800 18 14 -4.0425 4.9667 -2.9719 19 1 -3.8469 3.9923 -4.0754 20 1 -5.4920 5.0946 -2.6757 21 1 -3.5016 6.2889 -3.3775 22 7 1.1046 2.5987 0.0054 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 4.2673 1.5485 -0.0014 27 1 5.3473 4.3036 1.0252 28 1 5.6849 3.4796 -0.5159 29 1 5.0079 5.1257 -0.5167 30 1 0.5457 6.5813 1.0277 31 1 -0.3334 6.7214 -0.5137 32 1 1.4244 6.4410 -0.5139 33 1 -2.8623 4.3553 1.2512 34 1 -1.3206 4.3950 2.1405 35 1 -1.8719 5.8341 1.2499 36 1 -4.6869 3.3379 -0.7332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 53.848144 kcal Electronic energy + Delta-G solvation = -18513.287158 eV Core-core repulsion = 15738.131036 eV Total energy + Delta-G solvation = -2775.156121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29457 -36.59972 -33.82650 -33.16196 -31.21929 -29.00708 -28.65601 -28.19742 -25.86735 -25.25660 -22.95300 -22.42869 -19.71813 -17.52932 -16.93202 -16.24538 -15.70866 -15.02730 -14.91017 -14.66572 -13.74218 -13.48534 -13.34911 -13.26887 -13.14538 -12.54886 -12.42450 -12.38216 -11.88002 -11.64070 -11.33913 -11.04985 -10.91335 -10.72918 -10.59356 -10.49329 -10.36624 -10.21279 -10.13968 -9.63680 -9.07178 -8.59402 -8.38188 -7.60489 -6.97608 -6.11897 -4.20004 1.53506 1.76050 1.78599 2.42832 3.23536 3.30304 3.32780 3.63325 4.32764 4.39398 4.62025 5.15969 5.18756 5.37353 5.50010 5.60608 5.62812 5.65688 5.66318 5.94110 6.06790 6.12062 6.21233 6.30312 6.50036 6.61586 6.76947 6.84037 7.02524 7.30519 7.55012 7.60090 7.77716 8.00055 8.15136 8.45015 8.76398 9.00271 9.46212 10.92249 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.006813 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.415772 B = 4108.549676 C = 5038.190034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.080 6.080 3 C 0.210 3.790 4 C -0.297 4.297 5 C 0.224 3.776 6 C -0.099 4.099 7 N -0.588 5.588 8 C 0.585 3.415 9 N -0.555 5.555 10 C 0.107 3.893 11 C 0.268 3.732 12 H 0.070 0.930 13 C -0.147 4.147 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.564 5.564 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.009 0.991 35 H 0.030 0.970 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -2.929 2.114 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.156 5.844 3 C -0.051 4.051 4 C -0.331 4.331 5 C 0.074 3.926 6 C -0.157 4.157 7 N -0.315 5.315 8 C 0.227 3.773 9 N -0.265 5.265 10 C -0.037 4.037 11 C 0.168 3.832 12 H 0.088 0.912 13 C -0.206 4.206 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.292 5.292 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.153 0.847 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.055 -3.210 2.155 11.712 hybrid contribution -0.823 0.801 -0.814 1.408 sum 10.232 -2.409 1.340 10.597 Atomic orbital electron populations 1.23422 0.92537 1.05499 1.08119 1.85343 1.09382 0.98588 1.91055 1.23045 0.91434 0.98197 0.92415 1.21611 0.96566 0.96650 1.18244 1.21115 0.94555 0.89295 0.87629 1.20686 0.90131 1.01804 1.03053 1.67816 0.98036 1.39904 1.25728 1.19327 0.85934 0.85217 0.86850 1.46990 1.04286 1.03872 1.71384 1.21445 1.01888 0.80132 1.00270 1.19054 0.73594 0.96629 0.93927 0.91247 1.22118 1.03485 0.99203 0.95764 1.21352 0.96927 1.31883 1.06287 0.92297 1.24851 0.97129 0.94892 0.96697 1.69873 1.12161 1.35430 1.35158 0.86503 0.78789 0.79206 0.82967 1.20638 1.21059 1.19907 1.68301 1.33256 1.02455 1.25159 0.88993 0.88660 0.88598 0.84733 0.90211 0.90564 0.90381 0.94337 0.90508 0.91730 0.88682 0.97157 0.95107 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.68 101.05 0.98 -1.01 16 2 S -0.08 -1.23 22.74 -107.50 -2.44 -3.67 16 3 C 0.21 3.90 7.01 -16.49 -0.12 3.79 16 4 C -0.30 -4.83 9.61 -39.09 -0.38 -5.21 16 5 C 0.22 3.67 6.81 -82.35 -0.56 3.11 16 6 C -0.10 -1.11 10.21 36.01 0.37 -0.75 16 7 N -0.59 -11.60 9.04 -10.24 -0.09 -11.70 16 8 C 0.59 12.98 8.18 -322.89 -2.64 10.34 16 9 N -0.55 -12.65 2.85 -177.62 -0.51 -13.16 16 10 C 0.11 2.09 9.43 59.85 0.56 2.65 16 11 C 0.27 6.76 2.66 -69.08 -0.18 6.58 16 12 H 0.07 1.92 6.76 -51.93 -0.35 1.57 16 13 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 14 C -0.53 -14.13 7.99 -34.44 -0.28 -14.40 16 15 H 0.06 1.60 7.34 -52.49 -0.39 1.22 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -24.34 11.32 55.43 0.63 -23.72 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 N -0.56 -12.26 7.71 -12.71 -0.10 -12.36 16 23 H 0.09 1.57 8.13 -51.92 -0.42 1.14 16 24 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 25 H 0.10 1.20 8.14 -51.92 -0.42 0.77 16 26 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.53 7.02 -51.93 -0.36 1.16 16 32 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -29.26 314.00 -9.94 -39.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.13 Total: 1.20 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.00 Total: 3.59 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.07 Total: -60.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.44 Total: -3.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.26 -9.94 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.045 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds