Wall clock time and date at job start Mon Mar 30 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99976 * 2 1 4 4 C 1.39755 * 110.99704 * 123.94969 * 2 1 3 5 5 C 1.38881 * 120.08111 * 300.02109 * 4 2 1 6 6 C 1.38111 * 119.93743 * 179.97438 * 5 4 2 7 7 C 1.50703 * 119.94894 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46889 * 176.25031 * 7 6 5 9 9 C 1.53004 * 109.46993 * 296.24755 * 7 6 5 10 10 C 1.50696 * 109.47680 * 56.24850 * 7 6 5 11 11 H 1.08006 * 119.99559 * 0.10250 * 10 7 6 12 12 C 1.37874 * 120.00680 * 180.10386 * 10 7 6 13 13 N 1.31515 * 119.99290 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00416 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47055 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46856 * 119.99737 * 14 12 10 17 17 H 1.48497 * 109.47175 * 239.99780 * 14 12 10 18 18 C 1.38288 * 120.09811 * 359.97438 * 6 5 4 19 19 C 1.38276 * 120.15630 * 359.97438 * 18 6 5 20 20 C 1.38208 * 120.05945 * 0.02562 * 19 18 6 21 21 Cl 1.73603 * 120.04694 * 180.27443 * 20 19 18 22 22 H 1.09001 * 109.47064 * 296.04925 * 1 2 3 23 23 H 1.09001 * 109.47152 * 56.05219 * 1 2 3 24 24 H 1.09004 * 109.47365 * 176.05221 * 1 2 3 25 25 H 1.09005 * 109.47066 * 183.95315 * 3 2 1 26 26 H 1.09001 * 109.46776 * 303.94931 * 3 2 1 27 27 H 1.08991 * 109.47592 * 63.95013 * 3 2 1 28 28 H 1.08001 * 120.02675 * 359.95610 * 5 4 2 29 29 H 1.08999 * 109.47099 * 59.99673 * 8 7 6 30 30 H 1.09006 * 109.46940 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.46823 * 299.99425 * 8 7 6 32 32 H 1.08998 * 109.46805 * 60.00393 * 9 7 6 33 33 H 1.09000 * 109.46957 * 180.02562 * 9 7 6 34 34 H 1.08999 * 109.47174 * 299.99869 * 9 7 6 35 35 H 0.97005 * 119.99228 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.92534 * 180.02562 * 18 6 5 37 37 H 1.07995 * 119.96802 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0823 5 6 1.6579 -0.3488 2.3812 6 6 2.1539 -1.0713 3.4486 7 6 1.8152 -0.6596 4.8582 8 6 2.4074 -1.6715 5.8413 9 6 2.3993 0.7263 5.1391 10 6 0.3179 -0.6164 5.0229 11 1 -0.3243 -0.8641 4.1906 12 6 -0.2324 -0.2607 6.2361 13 7 0.5496 0.0413 7.2494 14 14 -2.0884 -0.2065 6.4400 15 1 -2.7383 -0.5863 5.1599 16 1 -2.4975 -1.1585 7.5038 17 1 -2.5048 1.1677 6.8185 18 6 2.9601 -2.1725 3.2258 19 6 3.2723 -2.5549 1.9342 20 6 2.7795 -1.8366 0.8613 21 17 3.1658 -2.3212 -0.7604 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0709 26 1 1.5898 1.9162 -0.8525 27 1 1.7044 1.8723 0.9232 28 1 1.0282 0.5111 2.5564 29 1 3.4904 -1.7027 5.7222 30 1 2.1628 -1.3735 6.8609 31 1 1.9912 -2.6588 5.6412 32 1 1.9774 1.4471 4.4387 33 1 2.1547 1.0239 6.1588 34 1 3.4823 0.6951 5.0201 35 1 0.1625 0.2919 8.1028 36 1 3.3462 -2.7358 4.0626 37 1 3.9019 -3.4157 1.7637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:57 Heat of formation + Delta-G solvation = 19.718471 kcal Electronic energy + Delta-G solvation = -18733.763918 eV Core-core repulsion = 15922.791365 eV Total energy + Delta-G solvation = -2810.972552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64420 -36.93047 -36.06744 -34.64640 -31.56293 -29.75914 -28.48718 -27.39146 -26.01845 -25.26979 -23.92368 -22.28398 -20.89180 -18.73593 -16.81346 -16.13375 -15.39253 -15.11146 -14.82802 -14.80875 -13.76933 -13.48527 -13.23840 -13.00558 -12.55935 -12.12683 -12.04230 -11.83114 -11.69051 -11.52815 -11.27680 -11.14558 -11.10386 -10.84681 -10.60794 -10.48475 -10.29903 -10.17349 -9.69557 -9.56844 -8.94710 -8.43735 -8.32195 -8.24275 -7.75586 -6.07013 -4.17495 1.73529 1.84940 2.69191 3.21956 3.31132 3.34775 4.08671 4.19122 4.37428 5.19391 5.30142 5.34921 5.54160 5.63838 5.65786 5.76471 5.85222 5.92234 6.02444 6.09184 6.12947 6.33083 6.61705 6.70665 6.71048 6.76904 6.91122 6.98750 7.05760 7.17886 7.24927 7.29722 7.54942 7.63859 7.70364 7.96605 8.09102 8.33469 8.82566 9.48207 10.93966 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.006388 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.118617 B = 4382.095175 C = 4936.345267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.503 5.503 3 C 0.030 3.970 4 C 0.083 3.917 5 C -0.125 4.125 6 C -0.014 4.014 7 C 0.093 3.907 8 C -0.134 4.134 9 C -0.126 4.126 10 C -0.501 4.501 11 H 0.056 0.944 12 C 0.066 3.934 13 N -0.884 5.884 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.124 4.124 19 C -0.114 4.114 20 C -0.035 4.035 21 Cl -0.081 7.081 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.127 0.873 29 H 0.013 0.987 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.260 0.740 36 H 0.132 0.868 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -0.669 -10.283 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.224 5.224 3 C -0.117 4.117 4 C -0.012 4.012 5 C -0.145 4.145 6 C -0.015 4.015 7 C 0.093 3.907 8 C -0.192 4.192 9 C -0.183 4.183 10 C -0.539 4.539 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.063 4.063 21 Cl -0.053 7.053 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.145 0.855 29 H 0.032 0.968 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.700 -0.861 -10.695 11.350 hybrid contribution -1.316 0.358 0.730 1.547 sum 2.383 -0.503 -9.966 10.259 Atomic orbital electron populations 1.22432 0.86100 1.02540 1.00824 1.59631 1.08314 1.13807 1.40599 1.22410 1.00801 0.87807 1.00721 1.18513 0.98392 0.94867 0.89408 1.21461 1.00793 1.01210 0.91080 1.20652 0.90981 0.91945 0.97894 1.17304 0.95646 0.92652 0.85090 1.21907 0.95393 0.97938 1.03932 1.21800 0.95413 0.97248 1.03860 1.21071 0.89788 1.46093 0.96985 0.92546 1.24896 0.97827 0.94924 0.95844 1.69816 1.34073 1.46257 1.02150 0.86556 0.85750 0.77660 0.78211 1.19821 1.20945 1.21008 1.21300 0.99258 0.97953 0.95686 1.20916 1.00997 0.99828 0.91547 1.20621 1.02820 0.97652 0.85169 1.98300 1.93195 1.91071 1.22685 0.94551 0.91349 0.91331 0.91416 0.91317 0.94822 0.85477 0.96785 0.89496 0.95124 0.95546 0.89318 0.97090 0.92960 0.85049 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.34 60.06 0.56 0.96 16 2 N -0.50 -7.78 4.39 -186.82 -0.82 -8.60 16 3 C 0.03 0.40 9.38 60.06 0.56 0.96 16 4 C 0.08 1.45 4.73 -83.73 -0.40 1.06 16 5 C -0.13 -2.43 7.14 -39.39 -0.28 -2.72 16 6 C -0.01 -0.29 4.72 -104.65 -0.49 -0.78 16 7 C 0.09 2.15 0.58 -156.81 -0.09 2.06 16 8 C -0.13 -3.02 6.91 37.16 0.26 -2.76 16 9 C -0.13 -2.87 8.10 37.16 0.30 -2.57 16 10 C -0.50 -12.80 7.59 -34.44 -0.26 -13.06 16 11 H 0.06 1.47 7.49 -52.48 -0.39 1.08 16 12 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 13 N -0.88 -23.26 9.35 55.43 0.52 -22.74 16 14 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.12 -2.29 8.98 -39.55 -0.36 -2.64 16 19 C -0.11 -1.89 9.82 -39.58 -0.39 -2.28 16 20 C -0.04 -0.60 6.34 -39.31 -0.25 -0.85 16 21 Cl -0.08 -1.24 28.44 -51.86 -1.47 -2.72 16 22 H 0.04 0.54 7.12 -51.93 -0.37 0.17 16 23 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.03 0.47 7.34 -51.93 -0.38 0.09 16 28 H 0.13 2.55 6.67 -52.49 -0.35 2.20 16 29 H 0.01 0.27 7.33 -51.93 -0.38 -0.11 16 30 H 0.09 2.16 6.08 -51.93 -0.32 1.84 16 31 H 0.03 0.66 7.68 -51.93 -0.40 0.27 16 32 H 0.03 0.58 7.61 -51.93 -0.40 0.18 16 33 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 36 H 0.13 2.29 5.89 -52.48 -0.31 1.98 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -26.00 308.15 -8.36 -34.36 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.28 Total: 0.70 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.93 Total: -21.01 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: -0.30 Total: -31.34 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.47 Total: -2.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.00 -8.36 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.075 kcal (2) G-P(sol) polarization free energy of solvation -25.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds