Wall clock time and date at job start Mon Mar 30 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99976 * 2 1 4 4 C 1.39755 * 110.99704 * 123.94969 * 2 1 3 5 5 C 1.38881 * 120.08111 * 300.02109 * 4 2 1 6 6 C 1.38111 * 119.93743 * 179.97438 * 5 4 2 7 7 C 1.50703 * 119.94894 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46889 * 176.25031 * 7 6 5 9 9 C 1.53004 * 109.46993 * 296.24755 * 7 6 5 10 10 C 1.50696 * 109.47680 * 56.24850 * 7 6 5 11 11 H 1.08006 * 119.99559 * 0.10250 * 10 7 6 12 12 C 1.37874 * 120.00680 * 180.10386 * 10 7 6 13 13 N 1.31515 * 119.99290 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00416 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47055 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46856 * 119.99737 * 14 12 10 17 17 H 1.48497 * 109.47175 * 239.99780 * 14 12 10 18 18 C 1.38288 * 120.09811 * 359.97438 * 6 5 4 19 19 C 1.38276 * 120.15630 * 359.97438 * 18 6 5 20 20 C 1.38208 * 120.05945 * 0.02562 * 19 18 6 21 21 Cl 1.73603 * 120.04694 * 180.27443 * 20 19 18 22 22 H 1.09001 * 109.47064 * 296.04925 * 1 2 3 23 23 H 1.09001 * 109.47152 * 56.05219 * 1 2 3 24 24 H 1.09004 * 109.47365 * 176.05221 * 1 2 3 25 25 H 1.09005 * 109.47066 * 183.95315 * 3 2 1 26 26 H 1.09001 * 109.46776 * 303.94931 * 3 2 1 27 27 H 1.08991 * 109.47592 * 63.95013 * 3 2 1 28 28 H 1.08001 * 120.02675 * 359.95610 * 5 4 2 29 29 H 1.08999 * 109.47099 * 59.99673 * 8 7 6 30 30 H 1.09006 * 109.46940 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.46823 * 299.99425 * 8 7 6 32 32 H 1.08998 * 109.46805 * 60.00393 * 9 7 6 33 33 H 1.09000 * 109.46957 * 180.02562 * 9 7 6 34 34 H 1.08999 * 109.47174 * 299.99869 * 9 7 6 35 35 H 0.97005 * 119.99228 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.92534 * 180.02562 * 18 6 5 37 37 H 1.07995 * 119.96802 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0823 5 6 1.6579 -0.3488 2.3812 6 6 2.1539 -1.0713 3.4486 7 6 1.8152 -0.6596 4.8582 8 6 2.4074 -1.6715 5.8413 9 6 2.3993 0.7263 5.1391 10 6 0.3179 -0.6164 5.0229 11 1 -0.3243 -0.8641 4.1906 12 6 -0.2324 -0.2607 6.2361 13 7 0.5496 0.0413 7.2494 14 14 -2.0884 -0.2065 6.4400 15 1 -2.7383 -0.5863 5.1599 16 1 -2.4975 -1.1585 7.5038 17 1 -2.5048 1.1677 6.8185 18 6 2.9601 -2.1725 3.2258 19 6 3.2723 -2.5549 1.9342 20 6 2.7795 -1.8366 0.8613 21 17 3.1658 -2.3212 -0.7604 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0709 26 1 1.5898 1.9162 -0.8525 27 1 1.7044 1.8723 0.9232 28 1 1.0282 0.5111 2.5564 29 1 3.4904 -1.7027 5.7222 30 1 2.1628 -1.3735 6.8609 31 1 1.9912 -2.6588 5.6412 32 1 1.9774 1.4471 4.4387 33 1 2.1547 1.0239 6.1588 34 1 3.4823 0.6951 5.0201 35 1 0.1625 0.2919 8.1028 36 1 3.3462 -2.7358 4.0626 37 1 3.9019 -3.4157 1.7637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:57 Heat of formation + Delta-G solvation = 7.957740 kcal Electronic energy + Delta-G solvation = -18734.273901 eV Core-core repulsion = 15922.791365 eV Total energy + Delta-G solvation = -2811.482536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03913 -38.38887 -37.35443 -36.22013 -33.40085 -31.15870 -30.00857 -28.49613 -27.75281 -27.22597 -25.23964 -23.81832 -22.30409 -20.35937 -18.30576 -17.90009 -16.77869 -16.70336 -16.42317 -15.99682 -15.29569 -14.95429 -14.74248 -14.52298 -13.97520 -13.58680 -13.43405 -13.22318 -13.14588 -13.04429 -12.93161 -12.65939 -12.62058 -12.44984 -12.34669 -12.19521 -11.95413 -11.62632 -11.42370 -11.28579 -10.79359 -10.39078 -9.69829 -9.50476 -9.21691 -8.02694 -6.18458 0.33508 0.42884 1.36982 1.38024 1.42772 1.51021 2.42260 2.79450 2.89329 3.20782 3.99012 4.14288 4.23840 4.41733 4.44924 4.47515 4.61696 4.62649 4.77829 4.78761 4.89159 4.95883 4.96388 4.97449 5.07113 5.12924 5.32285 5.37109 5.46371 5.57226 5.66114 5.80092 5.83128 5.90823 6.12101 6.25687 6.34465 6.43059 6.85932 7.48875 8.95997 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.006388 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.118617 B = 4382.095175 C = 4936.345267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.505 5.505 3 C 0.030 3.970 4 C 0.085 3.915 5 C -0.134 4.134 6 C -0.037 4.037 7 C 0.087 3.913 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.511 4.511 11 H 0.043 0.957 12 C 0.027 3.973 13 N -0.902 5.902 14 Si 0.940 3.060 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.129 4.129 19 C -0.103 4.103 20 C -0.041 4.041 21 Cl -0.061 7.061 22 H 0.021 0.979 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.023 0.977 28 H 0.111 0.889 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.140 0.860 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -1.240 -12.028 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.226 5.226 3 C -0.117 4.117 4 C -0.009 4.009 5 C -0.154 4.154 6 C -0.038 4.038 7 C 0.087 3.913 8 C -0.182 4.182 9 C -0.174 4.174 10 C -0.550 4.550 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.541 5.541 14 Si 0.767 3.233 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.147 4.147 19 C -0.122 4.122 20 C -0.068 4.068 21 Cl -0.032 7.032 22 H 0.040 0.960 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.041 0.959 28 H 0.129 0.871 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.102 -1.429 -12.448 13.184 hybrid contribution -1.413 0.532 1.166 1.907 sum 2.689 -0.897 -11.283 11.634 Atomic orbital electron populations 1.22471 0.85392 1.02595 1.01329 1.59774 1.08953 1.14673 1.39225 1.22475 1.00934 0.86912 1.01374 1.18621 0.97989 0.95115 0.89215 1.21326 1.01191 1.00991 0.91927 1.20494 0.92999 0.93641 0.96689 1.17264 0.94271 0.92701 0.87050 1.21761 0.96705 0.97596 1.02160 1.21654 0.96219 0.97395 1.02095 1.21267 0.91373 1.45806 0.96508 0.93909 1.25465 1.00931 0.95010 0.95814 1.69930 1.35111 1.46759 1.02281 0.85775 0.82090 0.77538 0.77854 1.19932 1.20788 1.20792 1.21376 0.99038 0.97343 0.96946 1.21178 1.00350 1.00172 0.90529 1.20802 1.02305 0.97336 0.86404 1.98307 1.92962 1.90797 1.21137 0.96018 0.88522 0.91876 0.91396 0.88656 0.95875 0.87130 0.94670 0.92098 0.95188 0.95964 0.91711 0.95710 0.93066 0.84226 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.34 127.69 1.19 1.97 16 2 N -0.51 -14.75 4.39 -744.96 -3.27 -18.02 16 3 C 0.03 0.74 9.38 127.69 1.20 1.94 16 4 C 0.09 2.89 4.73 38.21 0.18 3.07 16 5 C -0.13 -5.20 7.14 22.39 0.16 -5.04 16 6 C -0.04 -1.53 4.72 -19.88 -0.09 -1.62 16 7 C 0.09 4.07 0.58 -53.67 -0.03 4.03 16 8 C -0.12 -5.61 6.91 71.98 0.50 -5.11 16 9 C -0.12 -5.37 8.10 71.98 0.58 -4.79 16 10 C -0.51 -26.57 7.59 25.60 0.19 -26.38 16 11 H 0.04 2.28 7.49 -2.91 -0.02 2.26 16 12 C 0.03 1.42 5.15 84.65 0.44 1.86 16 13 N -0.90 -48.26 9.35 21.45 0.20 -48.06 16 14 Si 0.94 42.26 29.54 68.60 2.03 44.28 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 C -0.13 -4.56 8.98 22.29 0.20 -4.36 16 19 C -0.10 -3.18 9.82 22.27 0.22 -2.96 16 20 C -0.04 -1.31 6.34 22.44 0.14 -1.16 16 21 Cl -0.06 -1.69 28.44 -2.72 -0.08 -1.76 16 22 H 0.02 0.64 7.12 -2.39 -0.02 0.62 16 23 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 27 H 0.02 0.63 7.34 -2.39 -0.02 0.61 16 28 H 0.11 4.57 6.67 -2.91 -0.02 4.55 16 29 H 0.03 1.38 7.33 -2.39 -0.02 1.36 16 30 H 0.06 3.06 6.08 -2.38 -0.01 3.04 16 31 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 32 H 0.02 0.99 7.61 -2.39 -0.02 0.97 16 33 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.26 13.37 8.31 -92.70 -0.77 12.60 16 36 H 0.14 4.62 5.89 -2.91 -0.02 4.60 16 37 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -54.90 308.15 4.81 -50.08 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.05 Total: 12.04 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 4.88 Total: -38.56 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -3.07 Total: -66.08 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.76 kcal Total: -54.90 4.81 -50.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.039 kcal (2) G-P(sol) polarization free energy of solvation -54.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds