Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46820 * 2 1 4 4 C 1.50698 * 109.47301 * 119.99489 * 2 1 3 5 5 C 1.38268 * 119.98738 * 300.24030 * 4 2 1 6 6 C 1.38196 * 120.01087 * 180.27541 * 5 4 2 7 7 C 1.38370 * 119.98471 * 359.74194 * 6 5 4 8 8 Cl 1.73602 * 120.00913 * 179.97438 * 7 6 5 9 9 C 1.38328 * 119.97793 * 0.02562 * 7 6 5 10 10 C 1.38224 * 119.98557 * 120.00192 * 4 2 1 11 11 C 1.50694 * 119.99207 * 0.02562 * 10 4 2 12 12 H 1.09000 * 109.47358 * 324.71770 * 11 10 4 13 13 N 1.46900 * 109.47123 * 204.72400 * 11 10 4 14 14 C 1.53001 * 109.47459 * 84.72296 * 11 10 4 15 15 C 1.50697 * 109.46995 * 185.00036 * 14 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.08999 * 109.47010 * 60.00391 * 1 2 3 24 24 H 1.09004 * 109.46694 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47452 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47452 * 240.00238 * 2 1 3 27 27 H 1.08995 * 109.47426 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47131 * 299.99905 * 3 2 1 29 29 H 1.08998 * 109.47581 * 59.99577 * 3 2 1 30 30 H 1.07999 * 119.99484 * 0.02562 * 5 4 2 31 31 H 1.07994 * 120.00568 * 179.76640 * 6 5 4 32 32 H 1.07998 * 120.00946 * 179.97438 * 9 7 6 33 33 H 1.00909 * 110.99902 * 300.00226 * 13 11 10 34 34 H 1.00898 * 111.00392 * 63.94827 * 13 11 10 35 35 H 1.08998 * 109.47065 * 64.99462 * 14 11 10 36 36 H 1.09001 * 109.46892 * 304.99726 * 14 11 10 37 37 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6941 -0.2405 2.4861 6 6 2.1592 -0.8881 3.6149 7 6 2.9591 -2.0100 3.4882 8 17 3.5443 -2.8237 4.9057 9 6 3.2932 -2.4824 2.2318 10 6 2.8270 -1.8341 1.1034 11 6 3.1913 -2.3482 -0.2655 12 1 2.3546 -2.1926 -0.9466 13 7 3.4963 -3.7829 -0.1845 14 6 4.4178 -1.5946 -0.7838 15 6 4.7081 -2.0210 -2.1997 16 1 4.0834 -2.7593 -2.6802 17 6 5.7746 -1.4723 -2.8799 18 7 6.5351 -0.5728 -2.2950 19 14 6.1391 -2.0066 -4.6324 20 1 5.1435 -3.0230 -5.0573 21 1 6.0619 -0.8299 -5.5348 22 1 7.5023 -2.5920 -4.6979 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1298 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.0696 0.6351 2.5848 31 1 1.8980 -0.5189 4.5956 32 1 3.9179 -3.3578 2.1323 33 1 4.2691 -3.9535 0.4415 34 1 2.6825 -4.3105 0.0938 35 1 5.2770 -1.8212 -0.1525 36 1 4.2222 -0.5225 -0.7601 37 1 7.2851 -0.1866 -2.7737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260631122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = -5.558002 kcal Electronic energy + Delta-G solvation = -18407.715800 eV Core-core repulsion = 15595.647177 eV Total energy + Delta-G solvation = -2812.068623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89034 -36.66227 -35.40264 -34.88746 -32.48444 -29.92287 -29.44194 -28.25518 -26.90309 -24.60626 -23.18337 -22.13558 -19.98354 -19.51302 -17.01487 -16.09633 -15.91156 -14.99911 -14.91983 -14.31418 -13.98295 -13.74262 -13.59382 -13.46941 -12.91206 -12.81845 -12.28156 -12.16739 -12.05070 -11.55600 -11.40139 -11.09360 -10.95334 -10.85052 -10.79546 -10.54535 -10.51909 -10.38216 -10.07679 -9.65849 -9.07547 -8.59010 -8.31894 -8.17030 -8.00376 -5.92750 -3.91666 1.35705 1.50094 2.25584 3.36314 3.44102 3.49520 3.80627 4.53290 4.88750 4.89974 5.01795 5.22882 5.27590 5.42902 5.44951 5.50315 5.58900 5.63156 5.80738 5.95625 5.99641 6.03839 6.05591 6.18333 6.26674 6.39415 6.43897 6.51239 6.57334 6.75443 6.92796 7.04698 7.51880 7.68672 7.95056 8.07274 8.13178 8.50305 9.14773 9.70588 11.18814 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.006020 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.172214 B = 4650.261635 C = 5549.366008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.061 4.061 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.034 4.034 8 Cl -0.085 7.085 9 C -0.115 4.115 10 C -0.083 4.083 11 C 0.130 3.870 12 H 0.085 0.915 13 N -0.822 5.822 14 C 0.038 3.962 15 C -0.494 4.494 16 H 0.063 0.937 17 C 0.052 3.948 18 N -0.901 5.901 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.334 0.666 34 H 0.323 0.677 35 H 0.015 0.985 36 H 0.024 0.976 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 0.372 10.617 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.062 4.062 5 C -0.122 4.122 6 C -0.144 4.144 7 C -0.061 4.061 8 Cl -0.057 7.057 9 C -0.134 4.134 10 C -0.086 4.086 11 C 0.018 3.982 12 H 0.103 0.897 13 N -0.350 5.350 14 C 0.001 3.999 15 C -0.532 4.532 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.541 5.541 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.704 0.442 9.906 14.592 hybrid contribution 0.264 -0.176 0.410 0.518 sum -10.441 0.266 10.317 14.680 Atomic orbital electron populations 1.21843 0.94819 1.01620 1.01506 1.20289 0.95240 0.96580 0.96505 1.21808 1.02290 0.94585 1.01053 1.19836 0.96684 0.94912 0.94776 1.20894 1.00174 0.99692 0.91427 1.20868 0.99079 0.95191 0.99277 1.20813 1.01267 0.96546 0.87460 1.98342 1.87864 1.79091 1.40359 1.20840 1.01009 1.01378 0.90205 1.21287 0.94686 0.94694 0.97897 1.20911 1.01201 0.87588 0.88470 0.89684 1.58831 1.09838 1.07383 1.58940 1.19154 0.89963 0.94548 0.96264 1.21179 1.12253 1.22286 0.97527 0.91902 1.25011 0.96414 0.95365 0.98028 1.69981 1.18151 1.28895 1.37093 0.86550 0.78102 0.78323 0.85100 1.19719 1.21347 1.21290 0.92352 0.92821 0.92980 0.88308 0.91689 0.92421 0.93283 0.85626 0.85649 0.85423 0.85142 0.86610 0.96674 0.95740 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.00 37.16 0.33 -1.33 16 2 C -0.07 -0.99 2.66 -91.77 -0.24 -1.24 16 3 C -0.14 -1.99 9.01 37.16 0.33 -1.65 16 4 C -0.06 -0.95 4.78 -104.62 -0.50 -1.45 16 5 C -0.10 -1.40 8.71 -39.59 -0.34 -1.75 16 6 C -0.13 -1.69 9.83 -39.55 -0.39 -2.08 16 7 C -0.03 -0.51 6.32 -39.50 -0.25 -0.76 16 8 Cl -0.09 -1.13 28.96 -51.86 -1.50 -2.63 16 9 C -0.12 -1.84 9.05 -39.55 -0.36 -2.20 16 10 C -0.08 -1.41 5.05 -104.63 -0.53 -1.94 16 11 C 0.13 2.51 2.22 -68.87 -0.15 2.36 16 12 H 0.09 1.66 6.40 -51.93 -0.33 1.33 16 13 N -0.82 -14.79 8.54 -5.66 -0.05 -14.84 16 14 C 0.04 0.93 4.44 -27.88 -0.12 0.81 16 15 C -0.49 -13.53 8.84 -34.44 -0.30 -13.84 16 16 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 17 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 18 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.55 7.37 -51.93 -0.38 0.16 16 26 H 0.10 1.68 5.28 -51.93 -0.27 1.41 16 27 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.60 7.40 -51.93 -0.38 0.21 16 30 H 0.13 1.41 7.10 -52.49 -0.37 1.03 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.13 1.95 6.29 -52.49 -0.33 1.62 16 33 H 0.33 5.84 7.21 -39.29 -0.28 5.55 16 34 H 0.32 4.89 9.06 -39.29 -0.36 4.54 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.64 7.65 -51.93 -0.40 0.24 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -29.36 315.50 -8.89 -38.25 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.19 Total: 7.43 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.62 Total: -23.69 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.69 Total: -40.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.36 -8.89 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.689 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds