Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46820 * 2 1 4 4 C 1.50698 * 109.47301 * 119.99489 * 2 1 3 5 5 C 1.38268 * 119.98738 * 300.24030 * 4 2 1 6 6 C 1.38196 * 120.01087 * 180.27541 * 5 4 2 7 7 C 1.38370 * 119.98471 * 359.74194 * 6 5 4 8 8 Cl 1.73602 * 120.00913 * 179.97438 * 7 6 5 9 9 C 1.38328 * 119.97793 * 0.02562 * 7 6 5 10 10 C 1.38224 * 119.98557 * 120.00192 * 4 2 1 11 11 C 1.50694 * 119.99207 * 0.02562 * 10 4 2 12 12 H 1.09000 * 109.47358 * 324.71770 * 11 10 4 13 13 N 1.46900 * 109.47123 * 204.72400 * 11 10 4 14 14 C 1.53001 * 109.47459 * 84.72296 * 11 10 4 15 15 C 1.50697 * 109.46995 * 185.00036 * 14 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.08999 * 109.47010 * 60.00391 * 1 2 3 24 24 H 1.09004 * 109.46694 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47452 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47452 * 240.00238 * 2 1 3 27 27 H 1.08995 * 109.47426 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47131 * 299.99905 * 3 2 1 29 29 H 1.08998 * 109.47581 * 59.99577 * 3 2 1 30 30 H 1.07999 * 119.99484 * 0.02562 * 5 4 2 31 31 H 1.07994 * 120.00568 * 179.76640 * 6 5 4 32 32 H 1.07998 * 120.00946 * 179.97438 * 9 7 6 33 33 H 1.00909 * 110.99902 * 300.00226 * 13 11 10 34 34 H 1.00898 * 111.00392 * 63.94827 * 13 11 10 35 35 H 1.08998 * 109.47065 * 64.99462 * 14 11 10 36 36 H 1.09001 * 109.46892 * 304.99726 * 14 11 10 37 37 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6941 -0.2405 2.4861 6 6 2.1592 -0.8881 3.6149 7 6 2.9591 -2.0100 3.4882 8 17 3.5443 -2.8237 4.9057 9 6 3.2932 -2.4824 2.2318 10 6 2.8270 -1.8341 1.1034 11 6 3.1913 -2.3482 -0.2655 12 1 2.3546 -2.1926 -0.9466 13 7 3.4963 -3.7829 -0.1845 14 6 4.4178 -1.5946 -0.7838 15 6 4.7081 -2.0210 -2.1997 16 1 4.0834 -2.7593 -2.6802 17 6 5.7746 -1.4723 -2.8799 18 7 6.5351 -0.5728 -2.2950 19 14 6.1391 -2.0066 -4.6324 20 1 5.1435 -3.0230 -5.0573 21 1 6.0619 -0.8299 -5.5348 22 1 7.5023 -2.5920 -4.6979 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1298 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.0696 0.6351 2.5848 31 1 1.8980 -0.5189 4.5956 32 1 3.9179 -3.3578 2.1323 33 1 4.2691 -3.9535 0.4415 34 1 2.6825 -4.3105 0.0938 35 1 5.2770 -1.8212 -0.1525 36 1 4.2222 -0.5225 -0.7601 37 1 7.2851 -0.1866 -2.7737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260631122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = -22.191366 kcal Electronic energy + Delta-G solvation = -18408.437077 eV Core-core repulsion = 15595.647177 eV Total energy + Delta-G solvation = -2812.789899 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10543 -37.79930 -36.89046 -36.02158 -34.54256 -31.17989 -30.68328 -30.08045 -27.94327 -26.35552 -24.38013 -23.72836 -21.36385 -20.77687 -18.63077 -17.79602 -17.24030 -16.64269 -16.13872 -16.07650 -15.17493 -15.06764 -14.74200 -14.63748 -14.43272 -14.13275 -13.89061 -13.43948 -13.18994 -13.02048 -12.82102 -12.75535 -12.52363 -12.33313 -12.23087 -11.95409 -11.88865 -11.63523 -11.44610 -11.42224 -11.10506 -10.51196 -9.82370 -9.47334 -9.37611 -8.11116 -6.17030 0.19735 0.32691 1.14059 1.41482 1.43054 1.56034 2.46523 2.64023 3.22302 3.70286 3.78496 3.86504 3.90745 4.09496 4.32460 4.36608 4.40562 4.49599 4.61294 4.82332 4.84861 4.88220 4.91167 5.01122 5.07134 5.16817 5.22014 5.33284 5.39880 5.42279 5.53770 5.64203 5.76484 5.87301 5.89082 6.29651 6.48497 6.76670 6.97212 7.49513 9.00630 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.006020 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.172214 B = 4650.261635 C = 5549.366008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.068 4.068 5 C -0.099 4.099 6 C -0.116 4.116 7 C -0.044 4.044 8 Cl -0.073 7.073 9 C -0.124 4.124 10 C -0.107 4.107 11 C 0.147 3.853 12 H 0.080 0.920 13 N -0.831 5.831 14 C 0.051 3.949 15 C -0.503 4.503 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.957 3.043 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.284 1.284 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.336 0.664 34 H 0.341 0.659 35 H -0.019 1.019 36 H 0.001 0.999 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 0.597 11.453 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.069 4.069 5 C -0.117 4.117 6 C -0.135 4.135 7 C -0.071 4.071 8 Cl -0.044 7.044 9 C -0.143 4.143 10 C -0.109 4.109 11 C 0.035 3.965 12 H 0.098 0.902 13 N -0.360 5.360 14 C 0.013 3.987 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.211 1.211 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.000 1.000 36 H 0.020 0.980 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.439 0.650 10.748 16.452 hybrid contribution 0.795 -0.240 0.228 0.861 sum -11.644 0.409 10.976 16.007 Atomic orbital electron populations 1.21789 0.92185 1.02033 1.03020 1.20254 0.97360 0.96172 0.94925 1.21778 0.99906 0.94857 1.02809 1.20026 0.96433 0.94387 0.96077 1.21199 0.99897 1.00295 0.90318 1.21252 0.97512 0.94086 1.00639 1.20932 1.01590 0.97159 0.87392 1.98344 1.87784 1.78967 1.39344 1.20868 1.01150 1.01546 0.90711 1.21014 0.96894 0.96340 0.96688 1.20398 0.98291 0.87770 0.90066 0.90227 1.58729 1.10912 1.06952 1.59445 1.18899 0.91141 0.93865 0.94765 1.21504 1.12006 1.21784 0.98850 0.92219 1.25857 0.96393 0.95454 1.02259 1.70111 1.18778 1.30186 1.38842 0.85506 0.77889 0.78147 0.80132 1.18862 1.20645 1.21054 0.91452 0.92973 0.90834 0.91642 0.95293 0.91593 0.90599 0.82492 0.82752 0.85601 0.84948 0.84605 1.00047 0.98046 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.00 71.98 0.65 -2.21 16 2 C -0.07 -1.98 2.66 -11.54 -0.03 -2.01 16 3 C -0.14 -3.80 9.01 71.98 0.65 -3.15 16 4 C -0.07 -2.06 4.78 -19.86 -0.09 -2.15 16 5 C -0.10 -2.40 8.71 22.27 0.19 -2.21 16 6 C -0.12 -2.79 9.83 22.29 0.22 -2.57 16 7 C -0.04 -1.23 6.32 22.32 0.14 -1.09 16 8 Cl -0.07 -1.82 28.96 -2.72 -0.08 -1.90 16 9 C -0.12 -3.92 9.05 22.29 0.20 -3.72 16 10 C -0.11 -3.67 5.05 -19.87 -0.10 -3.77 16 11 C 0.15 5.86 2.22 44.17 0.10 5.96 16 12 H 0.08 3.23 6.40 -2.39 -0.02 3.22 16 13 N -0.83 -30.45 8.54 -171.81 -1.47 -31.92 16 14 C 0.05 2.61 4.44 29.85 0.13 2.75 16 15 C -0.50 -28.40 8.84 25.60 0.23 -28.18 16 16 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 17 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 18 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 19 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.27 7.37 -2.39 -0.02 1.25 16 26 H 0.07 2.31 5.28 -2.39 -0.01 2.30 16 27 H 0.03 0.99 8.04 -2.39 -0.02 0.97 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.66 7.40 -2.39 -0.02 1.65 16 30 H 0.16 2.80 7.10 -2.91 -0.02 2.78 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.13 3.91 6.29 -2.91 -0.02 3.89 16 33 H 0.34 12.08 7.21 -89.69 -0.65 11.43 16 34 H 0.34 10.32 9.06 -89.70 -0.81 9.50 16 35 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.00 0.07 7.65 -2.39 -0.02 0.05 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -64.60 315.50 3.14 -61.46 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.37 Total: 24.18 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.75 Total: -42.07 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.18 Total: -89.01 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -64.60 3.14 -61.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.272 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds