Wall clock time and date at job start Mon Mar 30 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.50705 * 109.46697 * 119.99918 * 2 1 3 5 5 C 1.38267 * 119.98679 * 300.02030 * 4 2 1 6 6 C 1.38188 * 120.00941 * 179.97438 * 5 4 2 7 7 C 1.38372 * 119.98943 * 0.02562 * 6 5 4 8 8 Cl 1.73608 * 120.01068 * 179.97438 * 7 6 5 9 9 C 1.38328 * 119.97677 * 359.74962 * 7 6 5 10 10 C 1.38215 * 119.98533 * 120.00373 * 4 2 1 11 11 C 1.50697 * 119.99658 * 359.97438 * 10 4 2 12 12 H 1.09001 * 109.47066 * 40.00367 * 11 10 4 13 13 N 1.46898 * 109.47356 * 160.00403 * 11 10 4 14 14 C 1.53006 * 109.47239 * 280.00476 * 11 10 4 15 15 C 1.50695 * 109.47196 * 174.99908 * 14 11 10 16 16 H 1.07999 * 120.00313 * 359.97438 * 15 14 11 17 17 C 1.37883 * 120.00213 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99492 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00314 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47100 * 89.99877 * 19 17 15 21 21 H 1.48497 * 109.46882 * 210.00015 * 19 17 15 22 22 H 1.48500 * 109.46884 * 329.99769 * 19 17 15 23 23 H 1.09000 * 109.46872 * 300.00120 * 1 2 3 24 24 H 1.09004 * 109.46711 * 60.00131 * 1 2 3 25 25 H 1.08994 * 109.46850 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47448 * 239.99523 * 2 1 3 27 27 H 1.09000 * 109.47325 * 60.00157 * 3 2 1 28 28 H 1.09004 * 109.47010 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47065 * 299.99658 * 3 2 1 30 30 H 1.07999 * 119.99333 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00434 * 180.02562 * 6 5 4 32 32 H 1.07999 * 120.01241 * 180.25439 * 9 7 6 33 33 H 1.00899 * 111.00281 * 59.99948 * 13 11 10 34 34 H 1.00905 * 110.99687 * 183.95659 * 13 11 10 35 35 H 1.09007 * 109.46744 * 294.99553 * 14 11 10 36 36 H 1.08995 * 109.46794 * 54.99799 * 14 11 10 37 37 H 0.97003 * 119.99950 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6977 -0.2380 2.4862 6 6 2.1575 -0.8894 3.6148 7 6 2.9534 -2.0142 3.4882 8 17 3.5319 -2.8326 4.9058 9 6 3.2840 -2.4891 2.2318 10 6 2.8269 -1.8341 1.1034 11 6 3.1904 -2.3490 -0.2654 12 1 3.4044 -1.5079 -0.9249 13 7 4.3779 -3.2079 -0.1662 14 6 2.0221 -3.1576 -0.8330 15 6 2.3363 -3.5686 -2.2484 16 1 3.2751 -3.2815 -2.6983 17 6 1.4251 -4.3113 -2.9691 18 7 0.2821 -4.6615 -2.4210 19 14 1.8143 -4.8202 -4.7238 20 1 2.5053 -6.1345 -4.7163 21 1 0.5524 -4.9287 -5.4991 22 1 2.6945 -3.8017 -5.3508 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.0769 0.6402 2.5849 31 1 1.8958 -0.5206 4.5956 32 1 3.9017 -3.3694 2.1323 33 1 4.2049 -3.9956 0.4402 34 1 4.6802 -3.5138 -1.0790 35 1 1.8654 -4.0471 -0.2227 36 1 1.1193 -2.5470 -0.8239 37 1 -0.3588 -5.1843 -2.9278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260631127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:30 Heat of formation + Delta-G solvation = -10.448320 kcal Electronic energy + Delta-G solvation = -18429.400227 eV Core-core repulsion = 15617.119545 eV Total energy + Delta-G solvation = -2812.280683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75329 -36.55998 -35.41338 -34.80648 -32.55533 -30.00457 -29.33381 -28.02635 -26.83597 -24.71116 -23.09190 -22.13157 -19.97969 -19.44578 -17.15367 -16.22212 -15.73213 -14.86949 -14.66717 -14.44283 -13.86289 -13.58077 -13.53863 -13.17852 -12.78608 -12.55087 -12.47986 -12.12226 -11.99440 -11.76607 -11.39060 -11.16554 -11.05133 -10.85323 -10.71208 -10.62959 -10.50462 -10.33970 -10.07853 -9.93466 -9.18241 -8.54988 -8.47330 -8.20712 -7.72405 -6.11843 -4.16583 1.48932 1.65989 2.38113 3.24085 3.31621 3.33834 3.94947 4.35692 4.97391 5.02562 5.13492 5.22365 5.30324 5.37885 5.51064 5.68104 5.74421 5.80093 5.88246 6.05269 6.08265 6.11414 6.15065 6.28879 6.40312 6.48746 6.56276 6.60300 6.65954 6.73116 7.06109 7.15707 7.43012 7.54438 7.81622 7.99652 8.15619 8.27398 8.89887 9.48829 10.98543 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.005992 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.463179 B = 4672.028343 C = 5556.906148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.066 4.066 5 C -0.106 4.106 6 C -0.127 4.127 7 C -0.039 4.039 8 Cl -0.088 7.088 9 C -0.097 4.097 10 C -0.038 4.038 11 C 0.124 3.876 12 H 0.083 0.917 13 N -0.842 5.842 14 C 0.001 3.999 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.329 0.671 34 H 0.348 0.652 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 8.561 9.196 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.198 4.198 4 C -0.066 4.066 5 C -0.124 4.124 6 C -0.145 4.145 7 C -0.065 4.065 8 Cl -0.059 7.059 9 C -0.116 4.116 10 C -0.039 4.039 11 C 0.013 3.987 12 H 0.101 0.899 13 N -0.371 5.371 14 C -0.038 4.038 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.091 9.040 9.589 13.536 hybrid contribution -0.545 -1.272 -1.180 1.818 sum 2.546 7.768 8.410 11.728 Atomic orbital electron populations 1.21810 0.94254 1.02669 1.00956 1.20271 0.96171 0.95502 0.96546 1.21839 1.01058 0.95505 1.01382 1.19776 0.96918 0.95152 0.94786 1.20807 1.00297 1.00000 0.91328 1.20837 0.99159 0.95382 0.99160 1.20850 1.01704 0.96478 0.87498 1.98333 1.88083 1.79037 1.40494 1.20853 1.00290 1.00790 0.89693 1.20025 0.94720 0.93438 0.95738 1.20578 0.91625 0.96353 0.90193 0.89897 1.59299 1.34856 1.24804 1.18120 1.19832 0.93256 0.95017 0.95668 1.21131 1.03162 1.34119 0.98076 0.92541 1.24996 0.94995 0.95849 0.98198 1.69967 1.07922 1.37684 1.37168 0.86608 0.77798 0.79001 0.84704 1.20664 1.21217 1.19791 0.93279 0.92565 0.91764 0.88440 0.92989 0.92726 0.92500 0.85726 0.85790 0.84858 0.85880 0.83860 0.96590 0.95470 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.01 37.16 0.33 -1.73 16 2 C -0.07 -1.02 2.31 -91.77 -0.21 -1.24 16 3 C -0.14 -1.77 9.01 37.16 0.33 -1.44 16 4 C -0.07 -1.06 4.78 -104.62 -0.50 -1.56 16 5 C -0.11 -1.51 8.71 -39.59 -0.34 -1.85 16 6 C -0.13 -1.79 9.83 -39.55 -0.39 -2.18 16 7 C -0.04 -0.60 6.32 -39.50 -0.25 -0.85 16 8 Cl -0.09 -1.22 28.96 -51.86 -1.50 -2.73 16 9 C -0.10 -1.65 9.04 -39.55 -0.36 -2.01 16 10 C -0.04 -0.69 5.09 -104.63 -0.53 -1.22 16 11 C 0.12 2.42 2.28 -68.86 -0.16 2.27 16 12 H 0.08 1.66 6.69 -51.93 -0.35 1.31 16 13 N -0.84 -15.31 8.68 -5.65 -0.05 -15.36 16 14 C 0.00 0.01 4.32 -27.88 -0.12 -0.11 16 15 C -0.53 -13.70 8.55 -34.44 -0.29 -13.99 16 16 H 0.06 1.42 7.15 -52.49 -0.38 1.05 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.05 0.62 7.39 -51.93 -0.38 0.24 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 26 H 0.10 1.73 5.09 -51.93 -0.26 1.47 16 27 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 1.47 7.10 -52.49 -0.37 1.10 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 2.21 6.25 -52.49 -0.33 1.88 16 33 H 0.33 5.80 7.28 -39.29 -0.29 5.52 16 34 H 0.35 6.42 7.90 -39.29 -0.31 6.11 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.03 0.69 6.67 -51.93 -0.35 0.34 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -27.63 311.99 -8.76 -36.40 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.04 Total: 10.42 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.58 Total: -24.33 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.69 Total: -40.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.63 -8.76 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.949 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds