Wall clock time and date at job start Mon Mar 30 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.50705 * 109.46697 * 119.99918 * 2 1 3 5 5 C 1.38267 * 119.98679 * 300.02030 * 4 2 1 6 6 C 1.38188 * 120.00941 * 179.97438 * 5 4 2 7 7 C 1.38372 * 119.98943 * 0.02562 * 6 5 4 8 8 Cl 1.73608 * 120.01068 * 179.97438 * 7 6 5 9 9 C 1.38328 * 119.97677 * 359.74962 * 7 6 5 10 10 C 1.38215 * 119.98533 * 120.00373 * 4 2 1 11 11 C 1.50697 * 119.99658 * 359.97438 * 10 4 2 12 12 H 1.09001 * 109.47066 * 40.00367 * 11 10 4 13 13 N 1.46898 * 109.47356 * 160.00403 * 11 10 4 14 14 C 1.53006 * 109.47239 * 280.00476 * 11 10 4 15 15 C 1.50695 * 109.47196 * 174.99908 * 14 11 10 16 16 H 1.07999 * 120.00313 * 359.97438 * 15 14 11 17 17 C 1.37883 * 120.00213 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99492 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00314 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47100 * 89.99877 * 19 17 15 21 21 H 1.48497 * 109.46882 * 210.00015 * 19 17 15 22 22 H 1.48500 * 109.46884 * 329.99769 * 19 17 15 23 23 H 1.09000 * 109.46872 * 300.00120 * 1 2 3 24 24 H 1.09004 * 109.46711 * 60.00131 * 1 2 3 25 25 H 1.08994 * 109.46850 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47448 * 239.99523 * 2 1 3 27 27 H 1.09000 * 109.47325 * 60.00157 * 3 2 1 28 28 H 1.09004 * 109.47010 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47065 * 299.99658 * 3 2 1 30 30 H 1.07999 * 119.99333 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00434 * 180.02562 * 6 5 4 32 32 H 1.07999 * 120.01241 * 180.25439 * 9 7 6 33 33 H 1.00899 * 111.00281 * 59.99948 * 13 11 10 34 34 H 1.00905 * 110.99687 * 183.95659 * 13 11 10 35 35 H 1.09007 * 109.46744 * 294.99553 * 14 11 10 36 36 H 1.08995 * 109.46794 * 54.99799 * 14 11 10 37 37 H 0.97003 * 119.99950 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6977 -0.2380 2.4862 6 6 2.1575 -0.8894 3.6148 7 6 2.9534 -2.0142 3.4882 8 17 3.5319 -2.8326 4.9058 9 6 3.2840 -2.4891 2.2318 10 6 2.8269 -1.8341 1.1034 11 6 3.1904 -2.3490 -0.2654 12 1 3.4044 -1.5079 -0.9249 13 7 4.3779 -3.2079 -0.1662 14 6 2.0221 -3.1576 -0.8330 15 6 2.3363 -3.5686 -2.2484 16 1 3.2751 -3.2815 -2.6983 17 6 1.4251 -4.3113 -2.9691 18 7 0.2821 -4.6615 -2.4210 19 14 1.8143 -4.8202 -4.7238 20 1 2.5053 -6.1345 -4.7163 21 1 0.5524 -4.9287 -5.4991 22 1 2.6945 -3.8017 -5.3508 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.0769 0.6402 2.5849 31 1 1.8958 -0.5206 4.5956 32 1 3.9017 -3.3694 2.1323 33 1 4.2049 -3.9956 0.4402 34 1 4.6802 -3.5138 -1.0790 35 1 1.8654 -4.0471 -0.2227 36 1 1.1193 -2.5470 -0.8239 37 1 -0.3588 -5.1843 -2.9278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260631127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:29 Heat of formation + Delta-G solvation = -25.428679 kcal Electronic energy + Delta-G solvation = -18430.049825 eV Core-core repulsion = 15617.119545 eV Total energy + Delta-G solvation = -2812.930280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02323 -37.76665 -36.95416 -35.98592 -34.53464 -31.32815 -30.57965 -29.85628 -27.93385 -26.43423 -24.30682 -23.76782 -21.38918 -20.74181 -18.84587 -17.85750 -17.02088 -16.62004 -16.14788 -15.79053 -15.12095 -14.89393 -14.85862 -14.58784 -14.30209 -14.09020 -13.82958 -13.60015 -13.34637 -13.00940 -12.89165 -12.76683 -12.44638 -12.35222 -12.25708 -11.97971 -11.84311 -11.73847 -11.57806 -11.48021 -10.99749 -10.60650 -9.80236 -9.53085 -9.22322 -8.21017 -6.32441 0.26550 0.42783 1.20631 1.39244 1.40101 1.50495 2.38488 2.71704 3.12526 3.71171 3.85248 3.87385 4.00155 4.18006 4.36394 4.42045 4.47408 4.57930 4.64847 4.85043 4.85586 4.91005 4.96964 5.02080 5.09441 5.19051 5.25455 5.37001 5.41966 5.44011 5.49967 5.55190 5.76834 5.83870 5.94393 6.16297 6.37866 6.66596 6.83655 7.37196 8.89779 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.005992 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.463179 B = 4672.028343 C = 5556.906148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.073 4.073 5 C -0.101 4.101 6 C -0.117 4.117 7 C -0.048 4.048 8 Cl -0.075 7.075 9 C -0.109 4.109 10 C -0.067 4.067 11 C 0.140 3.860 12 H 0.077 0.923 13 N -0.832 5.832 14 C 0.015 3.985 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.262 1.262 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.332 0.668 34 H 0.346 0.654 35 H -0.018 1.018 36 H 0.004 0.996 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 10.168 9.949 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.190 4.190 4 C -0.074 4.074 5 C -0.119 4.119 6 C -0.136 4.136 7 C -0.075 4.075 8 Cl -0.046 7.046 9 C -0.128 4.128 10 C -0.068 4.068 11 C 0.028 3.972 12 H 0.095 0.905 13 N -0.360 5.360 14 C -0.024 4.024 15 C -0.572 4.572 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.186 1.186 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.000 1.000 36 H 0.022 0.978 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.479 10.651 10.349 15.253 hybrid contribution -0.665 -1.767 -1.326 2.307 sum 2.814 8.884 9.023 12.971 Atomic orbital electron populations 1.21769 0.93915 1.00800 1.02719 1.20231 0.96385 0.97012 0.94918 1.21787 1.00782 0.93486 1.02987 1.19982 0.96519 0.94764 0.96142 1.21134 0.99901 1.00673 0.90214 1.21227 0.97537 0.94251 1.00573 1.20965 1.02001 0.97089 0.87411 1.98335 1.87975 1.78909 1.39380 1.20871 1.00747 1.00855 0.90372 1.19932 0.96948 0.95103 0.94836 1.20247 0.89993 0.95492 0.91469 0.90536 1.59304 1.33927 1.24851 1.17929 1.19641 0.94295 0.93755 0.94680 1.21525 1.03211 1.33429 0.99031 0.91829 1.25869 0.94824 0.96038 1.02470 1.70107 1.09082 1.38810 1.38897 0.85532 0.77583 0.78849 0.79598 1.20091 1.21243 1.18634 0.90522 0.91779 0.95349 0.91810 0.90764 0.93112 0.91500 0.82497 0.82767 0.85319 0.85528 0.84110 0.99976 0.97802 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.01 71.98 0.65 -3.26 16 2 C -0.07 -2.03 2.31 -11.54 -0.03 -2.06 16 3 C -0.13 -3.07 9.01 71.98 0.65 -2.42 16 4 C -0.07 -2.33 4.78 -19.86 -0.09 -2.42 16 5 C -0.10 -2.60 8.71 22.26 0.19 -2.41 16 6 C -0.12 -2.98 9.83 22.29 0.22 -2.76 16 7 C -0.05 -1.42 6.32 22.32 0.14 -1.28 16 8 Cl -0.07 -1.95 28.96 -2.72 -0.08 -2.03 16 9 C -0.11 -3.71 9.04 22.29 0.20 -3.51 16 10 C -0.07 -2.45 5.09 -19.87 -0.10 -2.55 16 11 C 0.14 5.66 2.28 44.17 0.10 5.76 16 12 H 0.08 3.17 6.69 -2.39 -0.02 3.16 16 13 N -0.83 -30.91 8.68 -171.80 -1.49 -32.40 16 14 C 0.01 0.74 4.32 29.85 0.13 0.87 16 15 C -0.53 -28.50 8.55 25.60 0.22 -28.28 16 16 H 0.06 3.23 7.15 -2.91 -0.02 3.21 16 17 C 0.01 0.35 5.46 84.66 0.46 0.82 16 18 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 19 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 H 0.08 1.76 7.39 -2.39 -0.02 1.74 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.03 1.00 7.68 -2.39 -0.02 0.98 16 26 H 0.06 2.35 5.09 -2.39 -0.01 2.34 16 27 H 0.07 1.38 7.39 -2.39 -0.02 1.36 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.16 2.99 7.10 -2.91 -0.02 2.97 16 31 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.13 4.34 6.25 -2.91 -0.02 4.32 16 33 H 0.33 12.08 7.28 -89.69 -0.65 11.42 16 34 H 0.35 12.96 7.90 -89.69 -0.71 12.25 16 35 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 36 H 0.00 0.20 6.67 -2.39 -0.02 0.18 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -60.79 311.99 3.21 -57.58 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.27 Total: 30.14 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 2.74 Total: -43.50 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -1.21 Total: -87.24 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -60.79 3.21 -57.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.154 kcal (2) G-P(sol) polarization free energy of solvation -60.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds