Wall clock time and date at job start Mon Mar 30 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46637 * 2 1 4 4 H 1.08992 * 109.47341 * 54.99865 * 3 2 1 5 5 C 1.52997 * 109.47198 * 294.99665 * 3 2 1 6 6 C 1.50702 * 109.46931 * 174.99828 * 3 2 1 7 7 C 1.38242 * 120.00560 * 59.99805 * 6 3 2 8 8 C 1.38225 * 120.01180 * 179.97438 * 7 6 3 9 9 C 1.38260 * 120.02702 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99469 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46613 * 20.00245 * 10 9 8 12 12 N 1.46906 * 109.46982 * 140.00032 * 10 9 8 13 13 C 1.50698 * 109.47576 * 260.00279 * 10 9 8 14 14 H 1.08004 * 119.99528 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00356 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99554 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00086 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47245 * 89.99579 * 17 15 13 19 19 H 1.48501 * 109.47356 * 209.99508 * 17 15 13 20 20 H 1.48499 * 109.47321 * 329.99647 * 17 15 13 21 21 C 1.38196 * 120.01327 * 0.27073 * 9 8 7 22 22 C 1.38332 * 120.00934 * 239.98008 * 6 3 2 23 23 Cl 1.73599 * 120.00998 * 359.97438 * 22 6 3 24 24 H 1.09010 * 109.47151 * 60.00734 * 1 2 3 25 25 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47513 * 300.00347 * 1 2 3 27 27 H 1.08998 * 109.47257 * 240.00279 * 2 1 3 28 28 H 1.08997 * 109.47106 * 119.99877 * 2 1 3 29 29 H 1.09004 * 109.47393 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47331 * 300.00057 * 5 3 2 31 31 H 1.08992 * 109.47269 * 60.00179 * 5 3 2 32 32 H 1.08000 * 119.99398 * 0.02562 * 7 6 3 33 33 H 1.07995 * 119.98487 * 180.02562 * 8 7 6 34 34 H 1.00896 * 111.00309 * 60.00059 * 12 10 9 35 35 H 1.00902 * 110.99923 * 183.96223 * 12 10 9 36 36 H 0.97005 * 119.99198 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.00452 * 179.72816 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4445 0.1239 7 6 4.3153 0.8169 -0.8347 8 6 5.6929 0.8190 -0.7215 9 6 6.2981 1.4482 0.3507 10 6 7.8000 1.4496 0.4737 11 1 8.2444 1.2421 -0.4998 12 7 8.2513 2.7647 0.9477 13 6 8.2246 0.3886 1.4561 14 1 7.4811 -0.2250 1.9430 15 6 9.5621 0.2020 1.7340 16 7 10.4674 0.9496 1.1414 17 14 10.0883 -1.1126 2.9523 18 1 10.3143 -2.3920 2.2331 19 1 11.3454 -0.6924 3.6218 20 1 9.0235 -1.2986 3.9705 21 6 5.5256 2.0707 1.3128 22 6 4.1467 2.0745 1.1966 23 17 3.1760 2.8638 2.4001 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9988 3.1542 -1.3076 30 1 2.0698 1.5876 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 3.8432 0.3255 -1.6726 33 1 6.2968 0.3289 -1.4708 34 1 7.8527 2.9805 1.8492 35 1 9.2587 2.8124 0.9770 36 1 11.4084 0.8180 1.3367 37 1 5.9983 2.5584 2.1525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260699324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:33 Heat of formation + Delta-G solvation = -13.651773 kcal Electronic energy + Delta-G solvation = -18054.347419 eV Core-core repulsion = 15241.927824 eV Total energy + Delta-G solvation = -2812.419595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35771 -36.45698 -36.06544 -34.25921 -31.63626 -30.28049 -30.07311 -28.25334 -26.06982 -24.63741 -22.98341 -21.92560 -20.57146 -19.32008 -16.60944 -16.25602 -15.62544 -15.07438 -14.57206 -14.41852 -14.09582 -13.69669 -13.21018 -13.12824 -12.99608 -12.77122 -12.28358 -12.09218 -11.80349 -11.67911 -11.41025 -11.16138 -11.01031 -10.92572 -10.86689 -10.71110 -10.57496 -10.32860 -10.17528 -10.00948 -9.61371 -8.70588 -8.22974 -7.91239 -7.24080 -6.14193 -4.31376 1.77955 1.92656 2.57625 3.19799 3.27306 3.31345 4.20152 4.35747 4.79892 4.89137 5.08327 5.09521 5.33149 5.45551 5.50767 5.56043 5.66267 5.73066 5.83194 5.93461 5.95592 6.05303 6.06899 6.10544 6.29255 6.38173 6.39049 6.53863 6.61782 6.90003 6.96457 7.04266 7.44689 7.66990 7.69939 8.03082 8.60659 8.87004 9.05789 9.40793 10.83278 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.005000 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.202719 B = 5598.315019 C = 5724.097537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.055 4.055 4 H 0.083 0.917 5 C -0.142 4.142 6 C -0.097 4.097 7 C -0.107 4.107 8 C -0.118 4.118 9 C -0.014 4.014 10 C 0.240 3.760 11 H 0.050 0.950 12 N -0.850 5.850 13 C -0.545 4.545 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.097 4.097 22 C -0.032 4.032 23 Cl -0.091 7.091 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.312 0.688 35 H 0.357 0.643 36 H 0.266 0.734 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 0.731 -2.482 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.199 4.199 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.015 4.015 10 C 0.130 3.870 11 H 0.068 0.932 12 N -0.380 5.380 13 C -0.585 4.585 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.116 4.116 22 C -0.059 4.059 23 Cl -0.062 7.062 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.173 0.827 36 H 0.076 0.924 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.523 1.130 -3.053 15.861 hybrid contribution 0.848 -1.304 1.621 2.246 sum -14.675 -0.174 -1.433 14.746 Atomic orbital electron populations 1.21825 0.96056 1.01310 1.01750 1.21563 0.95353 0.95978 1.02300 1.20193 0.91031 0.96712 0.99365 0.89877 1.21862 1.00686 1.00636 0.96712 1.19404 0.95255 1.00412 0.94735 1.20753 0.93474 0.99963 0.98325 1.21130 0.94060 0.99932 0.98570 1.20457 0.98228 0.91599 0.91250 1.18029 0.84334 0.87701 0.96965 0.93246 1.59542 1.16391 1.30831 1.31243 1.21803 0.92231 1.19221 1.25230 0.92532 1.25011 0.96445 0.96105 0.95976 1.69746 1.01395 1.39433 1.42569 0.86503 0.78059 0.81772 0.81180 1.20477 1.21087 1.19826 1.20817 0.90290 1.00320 1.00170 1.20777 0.91581 1.01326 0.92168 1.98299 1.71767 1.79644 1.56489 0.92583 0.92992 0.92856 0.91898 0.91889 0.92654 0.92594 0.92543 0.86267 0.86006 0.87880 0.82702 0.92388 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.11 -1.31 5.14 -26.73 -0.14 -1.45 16 3 C -0.05 -0.69 2.46 -91.77 -0.23 -0.92 16 4 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 5 C -0.14 -1.58 8.76 37.16 0.33 -1.25 16 6 C -0.10 -1.53 4.78 -104.58 -0.50 -2.03 16 7 C -0.11 -1.70 8.76 -39.58 -0.35 -2.05 16 8 C -0.12 -2.20 9.67 -39.58 -0.38 -2.59 16 9 C -0.01 -0.30 4.89 -104.63 -0.51 -0.82 16 10 C 0.24 5.82 2.95 -70.02 -0.21 5.61 16 11 H 0.05 1.31 8.00 -51.93 -0.42 0.89 16 12 N -0.85 -19.96 9.02 -6.65 -0.06 -20.02 16 13 C -0.55 -14.35 8.70 -34.44 -0.30 -14.65 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 16 N -0.89 -24.12 11.54 55.43 0.64 -23.48 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 21 C -0.10 -1.91 9.07 -39.55 -0.36 -2.27 16 22 C -0.03 -0.56 6.31 -39.50 -0.25 -0.81 16 23 Cl -0.09 -1.39 27.01 -51.86 -1.40 -2.79 16 24 H 0.06 0.48 6.57 -51.92 -0.34 0.14 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.21 16 31 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.12 1.58 7.16 -52.49 -0.38 1.20 16 33 H 0.12 2.15 8.04 -52.49 -0.42 1.73 16 34 H 0.31 6.99 7.35 -39.29 -0.29 6.70 16 35 H 0.36 8.95 7.08 -39.29 -0.28 8.67 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.13 2.53 6.67 -52.49 -0.35 2.18 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -26.35 312.15 -8.91 -35.25 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.14 Total: 13.26 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.63 Total: -22.60 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.58 Total: -43.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.40 Total: -2.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.35 -8.91 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.603 kcal (2) G-P(sol) polarization free energy of solvation -26.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds