Wall clock time and date at job start Mon Mar 30 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46637 * 2 1 4 4 H 1.08992 * 109.47341 * 54.99865 * 3 2 1 5 5 C 1.52997 * 109.47198 * 294.99665 * 3 2 1 6 6 C 1.50702 * 109.46931 * 174.99828 * 3 2 1 7 7 C 1.38242 * 120.00560 * 59.99805 * 6 3 2 8 8 C 1.38225 * 120.01180 * 179.97438 * 7 6 3 9 9 C 1.38260 * 120.02702 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99469 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46613 * 20.00245 * 10 9 8 12 12 N 1.46906 * 109.46982 * 140.00032 * 10 9 8 13 13 C 1.50698 * 109.47576 * 260.00279 * 10 9 8 14 14 H 1.08004 * 119.99528 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00356 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99554 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00086 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47245 * 89.99579 * 17 15 13 19 19 H 1.48501 * 109.47356 * 209.99508 * 17 15 13 20 20 H 1.48499 * 109.47321 * 329.99647 * 17 15 13 21 21 C 1.38196 * 120.01327 * 0.27073 * 9 8 7 22 22 C 1.38332 * 120.00934 * 239.98008 * 6 3 2 23 23 Cl 1.73599 * 120.00998 * 359.97438 * 22 6 3 24 24 H 1.09010 * 109.47151 * 60.00734 * 1 2 3 25 25 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47513 * 300.00347 * 1 2 3 27 27 H 1.08998 * 109.47257 * 240.00279 * 2 1 3 28 28 H 1.08997 * 109.47106 * 119.99877 * 2 1 3 29 29 H 1.09004 * 109.47393 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47331 * 300.00057 * 5 3 2 31 31 H 1.08992 * 109.47269 * 60.00179 * 5 3 2 32 32 H 1.08000 * 119.99398 * 0.02562 * 7 6 3 33 33 H 1.07995 * 119.98487 * 180.02562 * 8 7 6 34 34 H 1.00896 * 111.00309 * 60.00059 * 12 10 9 35 35 H 1.00902 * 110.99923 * 183.96223 * 12 10 9 36 36 H 0.97005 * 119.99198 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.00452 * 179.72816 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4445 0.1239 7 6 4.3153 0.8169 -0.8347 8 6 5.6929 0.8190 -0.7215 9 6 6.2981 1.4482 0.3507 10 6 7.8000 1.4496 0.4737 11 1 8.2444 1.2421 -0.4998 12 7 8.2513 2.7647 0.9477 13 6 8.2246 0.3886 1.4561 14 1 7.4811 -0.2250 1.9430 15 6 9.5621 0.2020 1.7340 16 7 10.4674 0.9496 1.1414 17 14 10.0883 -1.1126 2.9523 18 1 10.3143 -2.3920 2.2331 19 1 11.3454 -0.6924 3.6218 20 1 9.0235 -1.2986 3.9705 21 6 5.5256 2.0707 1.3128 22 6 4.1467 2.0745 1.1966 23 17 3.1760 2.8638 2.4001 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9988 3.1542 -1.3076 30 1 2.0698 1.5876 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 3.8432 0.3255 -1.6726 33 1 6.2968 0.3289 -1.4708 34 1 7.8527 2.9805 1.8492 35 1 9.2587 2.8124 0.9770 36 1 11.4084 0.8180 1.3367 37 1 5.9983 2.5584 2.1525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260699324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:33 Heat of formation + Delta-G solvation = -27.039028 kcal Electronic energy + Delta-G solvation = -18054.927934 eV Core-core repulsion = 15241.927824 eV Total energy + Delta-G solvation = -2813.000110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71803 -37.82419 -37.31354 -35.90071 -33.43764 -31.64060 -31.37023 -29.48236 -27.92795 -25.85474 -24.31329 -23.37992 -21.99352 -20.54397 -18.60399 -17.77018 -16.97596 -16.56101 -16.14753 -15.68661 -15.36946 -15.02441 -14.76986 -14.53261 -14.40726 -14.05940 -13.49498 -13.39453 -13.14572 -12.89494 -12.86109 -12.67502 -12.57785 -12.30948 -12.25843 -12.01118 -11.92889 -11.82955 -11.51018 -11.25859 -11.13937 -10.72475 -9.63831 -9.42261 -9.14098 -8.14073 -6.40184 0.35514 0.51170 1.22712 1.35831 1.38333 1.47803 2.34544 2.83570 3.03751 3.70826 3.84517 4.15526 4.18932 4.22638 4.40498 4.48936 4.57452 4.63707 4.70137 4.78958 4.82494 4.86073 5.06834 5.13240 5.16644 5.20035 5.27210 5.33890 5.39401 5.45549 5.58126 5.62439 5.65568 5.88121 6.01366 6.11189 6.60583 6.88770 7.07537 7.35872 8.80081 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.005000 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.202719 B = 5598.315019 C = 5724.097537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.053 4.053 4 H 0.081 0.919 5 C -0.140 4.140 6 C -0.087 4.087 7 C -0.096 4.096 8 C -0.128 4.128 9 C -0.045 4.045 10 C 0.244 3.756 11 H 0.018 0.982 12 N -0.843 5.843 13 C -0.558 4.558 14 H 0.045 0.955 15 C 0.025 3.975 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.274 1.274 21 C -0.109 4.109 22 C -0.041 4.041 23 Cl -0.072 7.072 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.317 0.683 35 H 0.346 0.654 36 H 0.268 0.732 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.536 0.068 -2.769 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.072 4.072 4 H 0.099 0.901 5 C -0.197 4.197 6 C -0.088 4.088 7 C -0.114 4.114 8 C -0.147 4.147 9 C -0.046 4.046 10 C 0.134 3.866 11 H 0.036 0.964 12 N -0.372 5.372 13 C -0.598 4.598 14 H 0.063 0.937 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.128 4.128 22 C -0.067 4.067 23 Cl -0.043 7.043 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.161 0.839 36 H 0.078 0.922 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.787 0.473 -3.340 18.104 hybrid contribution 1.457 -1.063 1.703 2.480 sum -16.330 -0.590 -1.637 16.423 Atomic orbital electron populations 1.21799 0.94263 1.02162 1.02361 1.21553 0.96918 0.94645 1.01965 1.20276 0.88496 0.97998 1.00417 0.90124 1.21860 1.02211 0.99921 0.95687 1.19856 0.97217 0.98288 0.93400 1.21049 0.92202 0.99102 0.99066 1.21260 0.95552 0.99855 0.98015 1.20224 0.96502 0.94439 0.93424 1.17826 0.86672 0.87311 0.94818 0.96405 1.59513 1.15484 1.30669 1.31515 1.21993 0.92319 1.19730 1.25760 0.93661 1.25703 0.96478 0.97912 0.97474 1.69838 1.01591 1.40448 1.43465 0.85571 0.77599 0.79449 0.79098 1.20071 1.20495 1.19894 1.20717 0.91474 1.00865 0.99780 1.20868 0.91043 1.01598 0.93208 1.98299 1.70941 1.79270 1.55815 0.91337 0.92098 0.92886 0.91166 0.93361 0.93489 0.91862 0.90359 0.82876 0.85770 0.87323 0.83915 0.92237 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.67 71.98 0.70 -1.58 16 2 C -0.11 -2.24 5.14 30.60 0.16 -2.09 16 3 C -0.05 -1.21 2.46 -11.54 -0.03 -1.24 16 4 H 0.08 1.89 6.17 -2.39 -0.01 1.87 16 5 C -0.14 -2.62 8.76 71.98 0.63 -1.99 16 6 C -0.09 -2.57 4.78 -19.84 -0.09 -2.66 16 7 C -0.10 -2.88 8.76 22.27 0.20 -2.68 16 8 C -0.13 -4.76 9.67 22.27 0.22 -4.55 16 9 C -0.04 -1.95 4.89 -19.87 -0.10 -2.04 16 10 C 0.24 12.30 2.95 43.42 0.13 12.42 16 11 H 0.02 1.00 8.00 -2.39 -0.02 0.98 16 12 N -0.84 -41.02 9.02 -174.95 -1.58 -42.60 16 13 C -0.56 -30.19 8.70 25.60 0.22 -29.96 16 14 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 15 C 0.02 1.33 5.38 84.65 0.46 1.79 16 16 N -0.91 -50.31 11.54 21.45 0.25 -50.07 16 17 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.11 -4.37 9.07 22.29 0.20 -4.17 16 22 C -0.04 -1.39 6.31 22.32 0.14 -1.25 16 23 Cl -0.07 -2.13 27.01 -2.72 -0.07 -2.20 16 24 H 0.07 0.89 6.57 -2.38 -0.02 0.87 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.29 7.57 -2.39 -0.02 1.28 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.10 7.39 -2.39 -0.02 1.08 16 31 H 0.08 1.15 6.56 -2.39 -0.02 1.13 16 32 H 0.15 3.51 7.16 -2.91 -0.02 3.49 16 33 H 0.12 4.43 8.04 -2.91 -0.02 4.41 16 34 H 0.32 14.71 7.35 -89.70 -0.66 14.05 16 35 H 0.35 17.99 7.08 -89.69 -0.63 17.35 16 36 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 37 H 0.12 4.77 6.67 -2.91 -0.02 4.75 16 Total: -1.00 -56.92 312.15 3.24 -53.69 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.21 Total: 36.33 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.82 Total: -40.00 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -1.33 Total: -92.66 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.20 kcal Total: -56.92 3.24 -53.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.647 kcal (2) G-P(sol) polarization free energy of solvation -56.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds