Wall clock time and date at job start Mon Mar 30 2020 07:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38215 * 120.00764 * 100.00223 * 3 2 1 5 5 C 1.38244 * 120.01437 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.98624 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47314 * 19.99579 * 6 5 4 8 8 N 1.46897 * 109.47044 * 139.99817 * 6 5 4 9 9 C 1.50701 * 109.46557 * 259.99369 * 6 5 4 10 10 H 1.07997 * 120.00411 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99577 * 179.97438 * 9 6 5 12 12 N 1.31510 * 119.99835 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99790 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46836 * 60.00830 * 13 11 9 15 15 H 1.48502 * 109.46746 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47471 * 300.00297 * 13 11 9 17 17 C 1.38241 * 120.02671 * 359.97438 * 5 4 3 18 18 C 1.38216 * 120.01088 * 359.97438 * 17 5 4 19 19 C 1.50707 * 120.00619 * 180.02562 * 18 17 5 20 20 C 1.52994 * 109.46867 * 99.99812 * 19 18 17 21 21 C 1.38351 * 120.00614 * 279.72388 * 3 2 1 22 22 Cl 1.73602 * 120.01597 * 0.02562 * 21 3 2 23 23 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 24 24 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 27 27 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 28 28 H 1.07995 * 119.98899 * 359.97438 * 4 3 2 29 29 H 1.00893 * 111.00478 * 59.99748 * 8 6 5 30 30 H 1.00906 * 110.99953 * 183.95660 * 8 6 5 31 31 H 0.96998 * 120.00067 * 179.97438 * 12 11 9 32 32 H 1.07994 * 119.99621 * 179.97438 * 17 5 4 33 33 H 1.08993 * 109.47269 * 220.00091 * 19 18 17 34 34 H 1.09008 * 109.46758 * 340.00061 * 19 18 17 35 35 H 1.09003 * 109.47517 * 299.99655 * 20 19 18 36 36 H 1.08997 * 109.47718 * 60.00384 * 20 19 18 37 37 H 1.09008 * 109.46741 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4587 2.0033 1.1787 5 6 2.9200 3.3065 1.1788 6 6 3.3842 3.9411 2.4644 7 1 3.6220 3.1622 3.1889 8 7 4.5817 4.7516 2.2059 9 6 2.2909 4.8211 3.0134 10 1 1.3537 4.9115 2.4846 11 6 2.4870 5.5101 4.1915 12 7 3.6282 5.3996 4.8358 13 14 1.1322 6.6015 4.8718 14 1 -0.0790 5.7827 5.1324 15 1 1.5895 7.2268 6.1387 16 1 0.8092 7.6630 3.8849 17 6 2.9556 4.0277 0.0000 18 6 2.5305 3.4460 -1.1795 19 6 2.5699 4.2322 -2.4647 20 6 3.8096 3.8342 -3.2681 21 6 2.0721 2.1406 -1.1809 22 17 1.5429 1.4076 -2.6629 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.4315 1.4401 2.0998 29 1 4.3871 5.4812 1.5368 30 1 4.9503 5.1358 3.0630 31 1 3.7662 5.8846 5.6644 32 1 3.3157 5.0459 0.0007 33 1 1.6746 4.0191 -3.0486 34 1 2.6106 5.2976 -2.2377 35 1 4.7050 4.0474 -2.6842 36 1 3.7689 2.7689 -3.4951 37 1 3.8383 4.4032 -4.1975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309350917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:25 Heat of formation + Delta-G solvation = -16.416014 kcal Electronic energy + Delta-G solvation = -18274.598736 eV Core-core repulsion = 15462.059275 eV Total energy + Delta-G solvation = -2812.539461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.36394 -36.24013 -34.94615 -34.75125 -32.52162 -31.02046 -28.90648 -28.51372 -25.97154 -23.77327 -23.63894 -22.56974 -20.00001 -19.25630 -16.58096 -16.26871 -15.84281 -15.01007 -14.41507 -14.19991 -13.91492 -13.78087 -13.20094 -13.05777 -12.76291 -12.48072 -12.40559 -11.85119 -11.77034 -11.67006 -11.40568 -11.35692 -11.07610 -10.95454 -10.80358 -10.70748 -10.60740 -10.52142 -10.05898 -9.94349 -9.62690 -8.70826 -8.12183 -7.84834 -7.24283 -6.14524 -4.31827 1.83826 1.86681 2.58139 3.20473 3.25843 3.28992 4.18774 4.34830 4.96593 5.02714 5.09279 5.22811 5.34998 5.55570 5.59591 5.69656 5.74518 5.81719 5.87826 6.00155 6.05197 6.10279 6.13105 6.30537 6.34409 6.40659 6.47384 6.55035 6.60244 6.88114 7.02264 7.10532 7.46744 7.68021 7.70930 8.02971 8.60475 8.86565 9.05277 9.40234 10.82899 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.005864 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.846657 B = 4773.739279 C = 5364.785973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.075 4.075 4 C -0.117 4.117 5 C -0.011 4.011 6 C 0.239 3.761 7 H 0.048 0.952 8 N -0.849 5.849 9 C -0.546 4.546 10 H 0.056 0.944 11 C 0.068 3.932 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.100 4.100 18 C -0.076 4.076 19 C -0.082 4.082 20 C -0.145 4.145 21 C -0.054 4.054 22 Cl -0.092 7.092 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.311 0.689 30 H 0.356 0.644 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -6.020 -11.734 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.136 4.136 5 C -0.012 4.012 6 C 0.129 3.871 7 H 0.066 0.934 8 N -0.379 5.379 9 C -0.585 4.585 10 H 0.074 0.926 11 C -0.135 4.135 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.119 4.119 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.202 4.202 21 C -0.080 4.080 22 Cl -0.063 7.063 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.121 0.879 30 H 0.173 0.827 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.193 -6.714 -11.949 13.880 hybrid contribution -1.428 1.402 0.846 2.172 sum -3.621 -5.313 -11.103 12.830 Atomic orbital electron populations 1.21727 0.94886 1.01235 1.02451 1.20494 0.96219 0.92609 1.02602 1.19579 1.00048 0.96153 0.91789 1.20866 1.00774 0.95435 0.96480 1.20564 0.91794 0.92312 0.96493 1.18017 0.88312 0.93288 0.87439 0.93391 1.59538 1.32254 1.28396 1.17742 1.21764 1.01440 1.27576 1.07750 0.92587 1.25009 0.95864 0.96514 0.96111 1.69728 1.23662 1.42414 1.17350 0.86569 0.82099 0.80617 0.78249 1.20109 1.21125 1.20182 1.20768 1.00177 1.00189 0.90741 1.19641 0.99574 0.92524 0.95967 1.20497 0.99074 0.99159 0.93242 1.21721 0.97628 1.01682 0.99181 1.20356 1.07577 0.93961 0.86146 1.98280 1.89391 1.83070 1.35555 0.92454 0.92433 0.92806 0.91087 0.91063 0.85843 0.87920 0.82744 0.92319 0.85714 0.91116 0.91051 0.92442 0.92455 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.85 37.16 0.37 -1.49 16 2 C -0.08 -1.13 5.52 -27.88 -0.15 -1.28 16 3 C -0.07 -1.26 5.14 -104.59 -0.54 -1.80 16 4 C -0.12 -2.24 9.29 -39.59 -0.37 -2.60 16 5 C -0.01 -0.23 4.89 -104.62 -0.51 -0.74 16 6 C 0.24 5.79 2.95 -70.02 -0.21 5.58 16 7 H 0.05 1.27 8.00 -51.93 -0.42 0.86 16 8 N -0.85 -19.70 9.02 -6.65 -0.06 -19.76 16 9 C -0.55 -14.31 8.70 -34.44 -0.30 -14.61 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.07 1.78 5.38 -17.82 -0.10 1.69 16 12 N -0.89 -24.07 11.54 55.43 0.64 -23.43 16 13 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.10 -1.92 8.91 -39.59 -0.35 -2.28 16 18 C -0.08 -1.29 5.14 -104.58 -0.54 -1.83 16 19 C -0.08 -1.15 5.52 -27.88 -0.15 -1.30 16 20 C -0.14 -1.82 9.84 37.15 0.37 -1.45 16 21 C -0.05 -0.90 6.30 -39.50 -0.25 -1.14 16 22 Cl -0.09 -1.29 24.31 -51.86 -1.26 -2.55 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 27 H 0.07 0.93 7.34 -51.93 -0.38 0.55 16 28 H 0.12 2.27 8.01 -52.49 -0.42 1.85 16 29 H 0.31 6.83 7.34 -39.30 -0.29 6.54 16 30 H 0.36 8.86 7.08 -39.29 -0.28 8.59 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.13 2.35 6.64 -52.49 -0.35 2.00 16 33 H 0.07 0.94 7.36 -51.93 -0.38 0.56 16 34 H 0.07 0.95 8.00 -51.92 -0.42 0.53 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.73 7.24 -51.93 -0.38 0.36 16 37 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -26.29 314.10 -9.04 -35.32 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -5.33 Total: 13.34 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.73 Total: -23.27 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.58 Total: -43.19 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.26 Total: -2.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.29 -9.04 -35.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309350917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.906 kcal (2) G-P(sol) polarization free energy of solvation -26.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds