Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38215 * 120.00764 * 100.00223 * 3 2 1 5 5 C 1.38244 * 120.01437 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.98624 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47314 * 19.99579 * 6 5 4 8 8 N 1.46897 * 109.47044 * 139.99817 * 6 5 4 9 9 C 1.50701 * 109.46557 * 259.99369 * 6 5 4 10 10 H 1.07997 * 120.00411 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99577 * 179.97438 * 9 6 5 12 12 N 1.31510 * 119.99835 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99790 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46836 * 60.00830 * 13 11 9 15 15 H 1.48502 * 109.46746 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47471 * 300.00297 * 13 11 9 17 17 C 1.38241 * 120.02671 * 359.97438 * 5 4 3 18 18 C 1.38216 * 120.01088 * 359.97438 * 17 5 4 19 19 C 1.50707 * 120.00619 * 180.02562 * 18 17 5 20 20 C 1.52994 * 109.46867 * 99.99812 * 19 18 17 21 21 C 1.38351 * 120.00614 * 279.72388 * 3 2 1 22 22 Cl 1.73602 * 120.01597 * 0.02562 * 21 3 2 23 23 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 24 24 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 27 27 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 28 28 H 1.07995 * 119.98899 * 359.97438 * 4 3 2 29 29 H 1.00893 * 111.00478 * 59.99748 * 8 6 5 30 30 H 1.00906 * 110.99953 * 183.95660 * 8 6 5 31 31 H 0.96998 * 120.00067 * 179.97438 * 12 11 9 32 32 H 1.07994 * 119.99621 * 179.97438 * 17 5 4 33 33 H 1.08993 * 109.47269 * 220.00091 * 19 18 17 34 34 H 1.09008 * 109.46758 * 340.00061 * 19 18 17 35 35 H 1.09003 * 109.47517 * 299.99655 * 20 19 18 36 36 H 1.08997 * 109.47718 * 60.00384 * 20 19 18 37 37 H 1.09008 * 109.46741 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4587 2.0033 1.1787 5 6 2.9200 3.3065 1.1788 6 6 3.3842 3.9411 2.4644 7 1 3.6220 3.1622 3.1889 8 7 4.5817 4.7516 2.2059 9 6 2.2909 4.8211 3.0134 10 1 1.3537 4.9115 2.4846 11 6 2.4870 5.5101 4.1915 12 7 3.6282 5.3996 4.8358 13 14 1.1322 6.6015 4.8718 14 1 -0.0790 5.7827 5.1324 15 1 1.5895 7.2268 6.1387 16 1 0.8092 7.6630 3.8849 17 6 2.9556 4.0277 0.0000 18 6 2.5305 3.4460 -1.1795 19 6 2.5699 4.2322 -2.4647 20 6 3.8096 3.8342 -3.2681 21 6 2.0721 2.1406 -1.1809 22 17 1.5429 1.4076 -2.6629 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.4315 1.4401 2.0998 29 1 4.3871 5.4812 1.5368 30 1 4.9503 5.1358 3.0630 31 1 3.7662 5.8846 5.6644 32 1 3.3157 5.0459 0.0007 33 1 1.6746 4.0191 -3.0486 34 1 2.6106 5.2976 -2.2377 35 1 4.7050 4.0474 -2.6842 36 1 3.7689 2.7689 -3.4951 37 1 3.8383 4.4032 -4.1975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309350917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = -29.566969 kcal Electronic energy + Delta-G solvation = -18275.169004 eV Core-core repulsion = 15462.059275 eV Total energy + Delta-G solvation = -2813.109730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77040 -37.62324 -36.57896 -35.95394 -34.12085 -32.65994 -30.30112 -29.86045 -27.92560 -25.14593 -24.86246 -24.10249 -21.26024 -20.82824 -18.58527 -17.70722 -17.24411 -16.77730 -15.96563 -15.56737 -15.27821 -14.87073 -14.79698 -14.51768 -14.14726 -13.97278 -13.61199 -13.41843 -13.24175 -12.97972 -12.85940 -12.74409 -12.67578 -12.39041 -12.30394 -12.10726 -11.96596 -11.79217 -11.64061 -11.33146 -11.23894 -10.72243 -9.50829 -9.37550 -9.12299 -8.13808 -6.40254 0.39761 0.45459 1.27873 1.37024 1.38062 1.46089 2.34187 2.80808 3.03622 3.75537 3.79139 3.98414 4.26889 4.35272 4.40949 4.49809 4.53941 4.55757 4.66632 4.68316 4.72861 4.99970 5.02744 5.04588 5.08493 5.13061 5.17068 5.32094 5.38575 5.42949 5.53957 5.58391 5.64929 5.88432 6.04688 6.10826 6.61139 6.89525 7.09307 7.36144 8.80074 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.005864 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.846657 B = 4773.739279 C = 5364.785973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.070 4.070 4 C -0.133 4.133 5 C -0.037 4.037 6 C 0.244 3.756 7 H 0.013 0.987 8 N -0.841 5.841 9 C -0.559 4.559 10 H 0.046 0.954 11 C 0.025 3.975 12 N -0.914 5.914 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.272 1.272 17 C -0.112 4.112 18 C -0.073 4.073 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.058 4.058 22 Cl -0.062 7.062 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.318 0.682 30 H 0.346 0.654 31 H 0.269 0.731 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -6.418 -13.583 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.038 4.038 6 C 0.134 3.866 7 H 0.031 0.969 8 N -0.370 5.370 9 C -0.599 4.599 10 H 0.064 0.936 11 C -0.175 4.175 12 N -0.554 5.554 13 Si 0.782 3.218 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.197 1.197 17 C -0.131 4.131 18 C -0.074 4.074 19 C -0.119 4.119 20 C -0.198 4.198 21 C -0.084 4.084 22 Cl -0.033 7.033 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.268 -7.119 -13.818 15.883 hybrid contribution -1.099 1.453 1.330 2.256 sum -4.367 -5.665 -12.487 14.391 Atomic orbital electron populations 1.21704 0.93840 1.02707 1.01694 1.20586 0.97001 0.90640 1.03664 1.19864 0.98673 0.97593 0.90994 1.20910 1.01712 0.95020 0.97539 1.20367 0.94102 0.93538 0.95805 1.17796 0.87996 0.92257 0.88521 0.96923 1.59497 1.31938 1.28440 1.17149 1.21964 1.01568 1.28215 1.08137 0.93593 1.25703 0.97818 0.97655 0.96345 1.69826 1.24970 1.43001 1.17562 0.85641 0.79490 0.78963 0.77730 1.20081 1.20532 1.19715 1.20752 1.01173 1.00118 0.91065 1.19932 0.98076 0.92972 0.96385 1.20584 1.00281 0.99138 0.91932 1.21692 0.96356 1.01889 0.99840 1.20518 1.06643 0.93954 0.87292 1.98288 1.88974 1.82530 1.33541 0.93644 0.92728 0.90267 0.90292 0.89751 0.86201 0.87135 0.83967 0.92214 0.86043 0.90032 0.90417 0.93297 0.92702 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.85 71.98 0.71 -2.60 16 2 C -0.08 -2.10 5.52 29.85 0.16 -1.93 16 3 C -0.07 -2.31 5.14 -19.84 -0.10 -2.41 16 4 C -0.13 -5.20 9.29 22.27 0.21 -4.99 16 5 C -0.04 -1.62 4.89 -19.86 -0.10 -1.72 16 6 C 0.24 12.32 2.95 43.42 0.13 12.44 16 7 H 0.01 0.72 8.00 -2.39 -0.02 0.70 16 8 N -0.84 -40.33 9.02 -174.96 -1.58 -41.91 16 9 C -0.56 -30.13 8.70 25.60 0.22 -29.91 16 10 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 11 C 0.03 1.35 5.38 84.66 0.46 1.81 16 12 N -0.91 -50.25 11.54 21.45 0.25 -50.01 16 13 Si 0.96 42.58 29.54 68.60 2.03 44.60 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C -0.11 -4.35 8.91 22.27 0.20 -4.15 16 18 C -0.07 -2.39 5.14 -19.84 -0.10 -2.49 16 19 C -0.08 -2.12 5.52 29.85 0.16 -1.95 16 20 C -0.14 -3.18 9.84 71.98 0.71 -2.47 16 21 C -0.06 -1.81 6.30 22.32 0.14 -1.67 16 22 Cl -0.06 -1.58 24.31 -2.72 -0.07 -1.64 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.29 7.29 -2.39 -0.02 1.28 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.91 8.00 -2.39 -0.02 1.89 16 27 H 0.08 1.96 7.34 -2.39 -0.02 1.94 16 28 H 0.12 4.61 8.01 -2.91 -0.02 4.59 16 29 H 0.32 14.34 7.34 -89.70 -0.66 13.69 16 30 H 0.35 17.78 7.08 -89.69 -0.63 17.15 16 31 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.12 4.65 6.64 -2.91 -0.02 4.63 16 33 H 0.08 1.94 7.36 -2.39 -0.02 1.92 16 34 H 0.08 1.91 8.00 -2.38 -0.02 1.89 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.26 7.24 -2.39 -0.02 1.24 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -56.47 314.10 3.22 -53.25 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.21 Total: 37.75 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 2.80 Total: -42.05 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -1.33 Total: -91.91 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.64 kcal Total: -56.47 3.22 -53.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309350917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.683 kcal (2) G-P(sol) polarization free energy of solvation -56.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds