Wall clock time and date at job start Mon Mar 30 2020 07:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46346 * 2 1 4 4 C 1.50698 * 109.47158 * 240.00139 * 2 1 3 5 5 H 1.07996 * 119.99904 * 245.51211 * 4 2 1 6 6 C 1.37880 * 119.99950 * 65.51048 * 4 2 1 7 7 N 1.31517 * 120.00072 * 8.30710 * 6 4 2 8 8 Si 1.86801 * 119.99922 * 188.30519 * 6 4 2 9 9 H 1.48493 * 109.47440 * 94.98729 * 8 6 4 10 10 H 1.48503 * 109.47238 * 214.99248 * 8 6 4 11 11 H 1.48506 * 109.46940 * 334.98909 * 8 6 4 12 12 N 1.46893 * 109.47395 * 119.99514 * 2 1 3 13 13 C 1.46894 * 111.00633 * 275.00626 * 12 2 1 14 14 H 1.09001 * 109.47102 * 36.97686 * 13 12 2 15 15 C 1.53005 * 109.46774 * 276.98268 * 13 12 2 16 16 C 1.52994 * 109.47646 * 156.98116 * 13 12 2 17 17 C 1.50693 * 109.47109 * 295.49225 * 16 13 12 18 18 C 1.38238 * 120.00827 * 98.14218 * 17 16 13 19 19 C 1.38221 * 120.01357 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.02608 * 359.70338 * 19 18 17 21 21 C 1.38192 * 120.01317 * 0.54776 * 20 19 18 22 22 C 1.38334 * 120.00763 * 278.11281 * 17 16 13 23 23 Cl 1.73600 * 120.01221 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.47321 * 303.80540 * 1 2 3 25 25 H 1.08995 * 109.47224 * 63.80719 * 1 2 3 26 26 H 1.09007 * 109.47116 * 183.80869 * 1 2 3 27 27 H 0.96996 * 119.99607 * 180.02562 * 7 6 4 28 28 H 1.00905 * 110.99549 * 38.95767 * 12 2 1 29 29 H 1.09003 * 109.46917 * 60.00076 * 15 13 12 30 30 H 1.09006 * 109.46914 * 179.97438 * 15 13 12 31 31 H 1.08995 * 109.47018 * 299.99987 * 15 13 12 32 32 H 1.09000 * 109.47516 * 175.48995 * 16 13 12 33 33 H 1.09002 * 109.47225 * 55.49349 * 16 13 12 34 34 H 1.08005 * 119.99424 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.98259 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.99291 * 180.29493 * 20 19 18 37 37 H 1.08006 * 120.00478 * 179.74190 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5778 -1.6374 -1.1339 6 6 1.7955 -0.1767 -2.4796 7 7 1.2781 1.0271 -2.5931 8 14 2.2095 -1.1636 -4.0106 9 1 0.9979 -1.8837 -4.4781 10 1 2.6827 -0.2460 -5.0781 11 1 3.2772 -2.1457 -3.6929 12 7 2.0197 -0.6923 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.2377 0.9105 2.3097 15 6 3.3893 1.0167 2.2950 16 6 2.0268 -0.5837 3.6459 17 6 0.6936 -1.2784 3.7492 18 6 0.5750 -2.6053 3.3802 19 6 -0.6477 -3.2428 3.4753 20 6 -1.7515 -2.5556 3.9454 21 6 -1.6354 -1.2276 4.3097 22 6 -0.4118 -0.5886 4.2139 23 17 -0.2637 1.0777 4.6776 24 1 -0.3634 0.5718 0.8539 25 1 -0.3633 0.4536 -0.9221 26 1 -0.3634 -1.0255 0.0683 27 1 1.1112 1.4022 -3.4718 28 1 1.4496 -1.4978 1.4100 29 1 3.4288 1.5912 1.3695 30 1 3.4356 1.6960 3.1463 31 1 4.2340 0.3289 2.3321 32 1 2.1538 0.0871 4.4957 33 1 2.8246 -1.3264 3.6470 34 1 1.4380 -3.1440 3.0174 35 1 -0.7399 -4.2794 3.1865 36 1 -2.7056 -3.0556 4.0241 37 1 -2.4987 -0.6898 4.6730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309786411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:08 Heat of formation + Delta-G solvation = 2.107026 kcal Electronic energy + Delta-G solvation = -18493.532714 eV Core-core repulsion = 15681.796472 eV Total energy + Delta-G solvation = -2811.736242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55125 -36.76049 -36.32531 -33.70306 -31.72795 -30.72623 -30.20663 -26.95661 -26.21910 -25.02554 -22.67089 -21.79626 -20.47896 -19.44169 -16.97913 -16.26878 -15.74443 -15.33191 -14.76001 -14.68556 -13.90455 -13.82626 -13.58507 -13.09135 -12.50889 -12.33398 -11.94782 -11.80941 -11.66323 -11.46849 -11.32885 -11.19591 -11.16439 -10.91396 -10.83631 -10.50727 -10.42936 -10.32776 -10.04301 -9.66085 -8.97515 -8.79875 -8.53098 -8.27345 -7.15881 -5.94646 -3.94143 1.21638 1.32007 2.24653 3.35114 3.41995 3.46123 3.67876 4.48790 4.77185 4.82302 4.99011 5.20048 5.33874 5.38046 5.45010 5.53048 5.61122 5.78370 5.89637 6.05213 6.13279 6.21449 6.30143 6.39798 6.44338 6.57063 6.68106 6.72249 6.83821 6.86608 6.91905 7.14721 7.46091 7.68629 7.95017 8.31014 8.65123 8.71208 9.12658 9.69378 11.14605 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.005806 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.940855 B = 4821.616600 C = 5253.518872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.891 3.109 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.680 5.680 13 C 0.089 3.911 14 H 0.040 0.960 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.065 4.065 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.032 4.032 23 Cl -0.071 7.071 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.259 0.741 28 H 0.323 0.677 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -4.606 15.305 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.720 3.280 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.022 4.022 14 H 0.058 0.942 15 C -0.192 4.192 16 C -0.125 4.125 17 C -0.066 4.066 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.059 4.059 23 Cl -0.042 7.042 24 H 0.027 0.973 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.293 -4.230 15.042 15.969 hybrid contribution -0.980 -0.182 -0.763 1.255 sum -4.273 -4.412 14.279 15.544 Atomic orbital electron populations 1.22338 1.01276 0.98191 1.00037 1.19183 0.88909 0.95009 0.86587 0.94132 1.21133 1.34261 1.08069 0.89792 0.92092 1.24943 0.95735 0.94775 0.98934 1.69970 1.45488 1.14599 1.23470 0.86588 0.78434 0.80047 0.82958 1.20966 1.21458 1.19861 1.60951 1.57939 1.08916 1.03307 1.21374 0.97352 0.94106 0.89361 0.94249 1.21746 0.97342 0.99186 1.00957 1.20937 0.92791 0.99577 0.99173 1.19889 0.95280 0.94060 0.97352 1.21144 0.98437 0.93544 0.98964 1.21239 0.92757 1.00318 0.98710 1.21045 0.99014 0.93813 0.99708 1.20997 0.95942 0.95132 1.00976 1.20821 0.95262 0.85937 1.03887 1.98355 1.98121 1.17074 1.90668 0.97285 0.91127 0.95571 0.93179 0.85869 0.92059 0.93897 0.92500 0.90490 0.90052 0.84682 0.85503 0.85487 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.03 37.16 0.34 -3.57 16 2 C 0.21 5.37 2.25 -68.87 -0.15 5.21 16 3 H 0.04 1.15 6.92 -51.93 -0.36 0.79 16 4 C -0.49 -13.82 8.77 -34.44 -0.30 -14.12 16 5 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 6 C 0.06 1.60 5.19 -17.82 -0.09 1.51 16 7 N -0.90 -26.22 12.10 55.43 0.67 -25.55 16 8 Si 0.89 21.73 29.55 -169.99 -5.02 16.71 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.68 -14.45 6.03 -100.96 -0.61 -15.06 16 13 C 0.09 1.61 2.44 -67.72 -0.17 1.44 16 14 H 0.04 0.78 6.53 -51.93 -0.34 0.45 16 15 C -0.13 -2.33 9.38 37.16 0.35 -1.99 16 16 C -0.09 -1.28 4.43 -27.89 -0.12 -1.41 16 17 C -0.06 -0.94 4.60 -104.59 -0.48 -1.42 16 18 C -0.10 -1.36 8.22 -39.59 -0.33 -1.69 16 19 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 20 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 21 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 22 C -0.03 -0.46 6.31 -39.50 -0.25 -0.71 16 23 Cl -0.07 -0.99 26.83 -51.86 -1.39 -2.38 16 24 H 0.01 0.19 7.46 -51.93 -0.39 -0.20 16 25 H 0.07 1.91 6.78 -51.93 -0.35 1.55 16 26 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.32 6.54 5.92 -39.29 -0.23 6.31 16 29 H 0.06 1.21 7.28 -51.93 -0.38 0.83 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 33 H 0.08 1.13 8.02 -51.93 -0.42 0.71 16 34 H 0.14 1.66 8.03 -52.48 -0.42 1.24 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -29.55 315.25 -9.34 -38.89 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.34 Total: 4.64 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.39 Total: -21.99 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.06 Total: -40.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.39 Total: -2.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.55 -9.34 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309786411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.993 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds